data_8XL5 # _model_server_result.job_id NDzKL7AsmupZiOEAUTXTsQ _model_server_result.datetime_utc '2024-10-31 09:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":801}' # _entry.id 8XL5 # _exptl.entry_id 8XL5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 244.311 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XL5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 S N N ? 3 U N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 694 A LYS 694 1_555 M C11 BTN . A BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 C NZ LYS 694 C LYS 694 1_555 O C11 BTN . C BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 E NZ LYS 694 E LYS 694 1_555 Q C11 BTN . E BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 G NZ LYS 694 G LYS 694 1_555 S C11 BTN . G BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 I NZ LYS 694 I LYS 694 1_555 U C11 BTN . I BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 K NZ LYS 694 K LYS 694 1_555 W C11 BTN . K BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 164 n n C11 O12 BTN sing 165 n n C11 C10 BTN sing 166 n n O12 HO2 BTN sing 167 n n C10 C9 BTN sing 168 n n C10 H101 BTN sing 169 n n C10 H102 BTN sing 170 n n C9 C8 BTN sing 171 n n C9 H91 BTN sing 172 n n C9 H92 BTN sing 173 n n C8 C7 BTN sing 174 n n C8 H81 BTN sing 175 n n C8 H82 BTN sing 176 n n C7 C2 BTN sing 177 n n C7 H71 BTN sing 178 n n C7 H72 BTN sing 179 n n C2 S1 BTN sing 180 n n C2 C4 BTN sing 181 n n C2 H2 BTN sing 182 n n S1 C6 BTN sing 183 n n C6 C5 BTN sing 184 n n C6 H61 BTN sing 185 n n C6 H62 BTN sing 186 n n C5 N1 BTN sing 187 n n C5 C4 BTN sing 188 n n C5 H5 BTN sing 189 n n N1 C3 BTN sing 190 n n N1 HN1 BTN sing 191 n n C3 O3 BTN doub 192 n n C3 N2 BTN sing 193 n n N2 C4 BTN sing 194 n n N2 HN2 BTN sing 195 n n C4 H4 BTN sing 196 n n # _atom_sites.entry_id 8XL5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 BTN A 1 801 801 BTN BTN . N 4 1VU B 1 601 601 1VU 1VU . O 3 BTN C 1 801 801 BTN BTN . P 4 1VU D 1 601 601 1VU 1VU . Q 3 BTN E 1 801 801 BTN BTN . R 4 1VU F 1 601 601 1VU 1VU . S 3 BTN G 1 801 801 BTN BTN . T 4 1VU H 1 601 601 1VU 1VU . U 3 BTN I 1 801 801 BTN BTN . V 4 1VU J 1 601 601 1VU 1VU . W 3 BTN K 1 801 801 BTN BTN . X 4 1VU L 1 601 601 1VU 1VU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . O 3 287.489 296.818 299.173 1 70.57 ? C11 BTN 801 C 1 HETATM 2 O O11 BTN . . . O 3 287.153 297.958 299.302 1 70.57 ? O11 BTN 801 C 1 HETATM 3 C C10 BTN . . . O 3 287.618 296.206 297.866 1 70.57 ? C10 BTN 801 C 1 HETATM 4 C C9 BTN . . . O 3 287.327 294.715 297.678 1 70.57 ? C9 BTN 801 C 1 HETATM 5 C C8 BTN . . . O 3 287.743 294.208 296.321 1 70.57 ? C8 BTN 801 C 1 HETATM 6 C C7 BTN . . . O 3 286.703 294.226 295.218 1 70.57 ? C7 BTN 801 C 1 HETATM 7 C C2 BTN . . . O 3 285.831 292.978 295.291 1 70.57 ? C2 BTN 801 C 1 HETATM 8 S S1 BTN . . . O 3 286.819 291.635 295.276 1 70.57 ? S1 BTN 801 C 1 HETATM 9 C C6 BTN . . . O 3 285.498 290.601 294.608 1 70.57 ? C6 BTN 801 C 1 HETATM 10 C C5 BTN . . . O 3 284.532 291.448 293.823 1 70.57 ? C5 BTN 801 C 1 HETATM 11 N N1 BTN . . . O 3 284.843 291.368 292.417 1 70.57 ? N1 BTN 801 C 1 HETATM 12 C C3 BTN . . . O 3 285.287 292.523 291.953 1 70.57 ? C3 BTN 801 C 1 HETATM 13 O O3 BTN . . . O 3 285.659 292.752 290.615 1 70.57 ? O3 BTN 801 C 1 HETATM 14 N N2 BTN . . . O 3 285.33 293.424 292.922 1 70.57 ? N2 BTN 801 C 1 HETATM 15 C C4 BTN . . . O 3 284.81 292.897 294.162 1 70.57 ? C4 BTN 801 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #