data_8XL7 # _model_server_result.job_id zkZor8W9e6T6e-IVJomGbQ _model_server_result.datetime_utc '2025-01-02 17:26:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":601}' # _entry.id 8XL7 # _exptl.entry_id 8XL7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XL7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 R N N ? 4 U N N ? 4 V N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 681 A LYS 681 1_555 M C11 BTN . A BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 C NZ LYS 681 C LYS 681 1_555 P C11 BTN . C BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 E NZ LYS 681 E LYS 681 1_555 Q C11 BTN . E BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 G NZ LYS 681 G LYS 681 1_555 S C11 BTN . G BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 I NZ LYS 681 I LYS 681 1_555 T C11 BTN . I BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale6 K NZ LYS 681 K LYS 681 1_555 W C11 BTN . K BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 8XL7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 BTN A 1 801 801 BTN BTN . N 4 ACO B 1 601 601 ACO ACO . O 4 ACO B 1 602 601 ACO ACO . P 3 BTN C 1 801 801 BTN BTN . Q 3 BTN E 1 801 801 BTN BTN . R 4 ACO F 1 601 601 ACO ACO . S 3 BTN G 1 801 801 BTN BTN . T 3 BTN I 1 801 801 BTN BTN . U 4 ACO J 1 601 601 ACO ACO . V 4 ACO J 1 602 601 ACO ACO . W 3 BTN K 1 801 801 BTN BTN . X 4 ACO L 1 601 601 ACO ACO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . N 4 266.456 208.691 242.463 1 20 ? N1A ACO 601 B 1 HETATM 2 C C2A ACO . . . N 4 267.303 207.798 241.931 1 20 ? C2A ACO 601 B 1 HETATM 3 N N3A ACO . . . N 4 267.17 207.313 240.689 1 20 ? N3A ACO 601 B 1 HETATM 4 C C4A ACO . . . N 4 266.154 207.712 239.896 1 20 ? C4A ACO 601 B 1 HETATM 5 C C5A ACO . . . N 4 265.191 208.688 240.406 1 20 ? C5A ACO 601 B 1 HETATM 6 C C6A ACO . . . N 4 265.401 209.175 241.781 1 20 ? C6A ACO 601 B 1 HETATM 7 N N6A ACO . . . N 4 264.576 210.08 242.348 1 20 ? N6A ACO 601 B 1 HETATM 8 N N7A ACO . . . N 4 264.309 208.896 239.422 1 20 ? N7A ACO 601 B 1 HETATM 9 C C8A ACO . . . N 4 264.672 208.122 238.369 1 20 ? C8A ACO 601 B 1 HETATM 10 N N9A ACO . . . N 4 265.767 207.41 238.662 1 20 ? N9A ACO 601 B 1 HETATM 11 C C1B ACO . . . N 4 266.484 206.466 237.775 1 20 ? C1B ACO 601 B 1 HETATM 12 C C2B ACO . . . N 4 265.995 205.03 237.786 1 20 ? C2B ACO 601 B 1 HETATM 13 O O2B ACO . . . N 4 266.468 204.271 238.902 1 20 ? O2B ACO 601 B 1 HETATM 14 C C3B ACO . . . N 4 266.605 204.507 236.503 1 20 ? C3B ACO 601 B 1 HETATM 15 O O3B ACO . . . N 4 267.893 203.939 236.755 1 20 ? O3B ACO 601 B 1 HETATM 16 P P3B ACO . . . N 4 269.245 204.327 235.959 1 20 ? P3B ACO 601 B 1 HETATM 17 O O7A ACO . . . N 4 269.794 205.509 236.718 1 20 ? O7A ACO 601 B 1 HETATM 18 O O8A ACO . . . N 4 270.093 203.092 236.073 1 20 ? O8A ACO 601 B 1 HETATM 19 O O9A ACO . . . N 4 268.874 204.609 234.528 1 20 ? O9A ACO 601 B 1 HETATM 20 C C4B ACO . . . N 4 266.681 205.731 235.613 1 20 ? C4B ACO 601 B 1 HETATM 21 O O4B ACO . . . N 4 266.347 206.85 236.419 1 20 ? O4B ACO 601 B 1 HETATM 22 C C5B ACO . . . N 4 265.649 205.597 234.522 1 20 ? C5B ACO 601 B 1 HETATM 23 O O5B ACO . . . N 4 264.416 205.415 235.206 1 20 ? O5B ACO 601 B 1 HETATM 24 P P1A ACO . . . N 4 263.234 204.518 234.611 1 20 ? P1A ACO 601 B 1 HETATM 25 O O1A ACO . . . N 4 262.849 203.509 235.656 1 20 ? O1A ACO 601 B 1 HETATM 26 O O2A ACO . . . N 4 263.62 204.1 233.225 1 20 ? O2A ACO 601 B 1 HETATM 27 O O3A ACO . . . N 4 262.055 205.577 234.472 1 20 ? O3A ACO 601 B 1 HETATM 28 P P2A ACO . . . N 4 261.402 205.777 233.037 1 20 ? P2A ACO 601 B 1 HETATM 29 O O4A ACO . . . N 4 262.493 206.063 232.044 1 20 ? O4A ACO 601 B 1 HETATM 30 O O5A ACO . . . N 4 260.493 204.601 232.816 1 20 ? O5A ACO 601 B 1 HETATM 31 O O6A ACO . . . N 4 260.544 207.108 233.281 1 20 ? O6A ACO 601 B 1 HETATM 32 C CBP ACO . . . N 4 259.748 208.522 235.091 1 20 ? CBP ACO 601 B 1 HETATM 33 C CCP ACO . . . N 4 260.949 208.036 234.288 1 20 ? CCP ACO 601 B 1 HETATM 34 C CDP ACO . . . N 4 258.556 208.716 234.164 1 20 ? CDP ACO 601 B 1 HETATM 35 C CEP ACO . . . N 4 260.06 209.839 235.781 1 20 ? CEP ACO 601 B 1 HETATM 36 C CAP ACO . . . N 4 259.403 207.459 236.124 1 20 ? CAP ACO 601 B 1 HETATM 37 O OAP ACO . . . N 4 259.344 206.195 235.451 1 20 ? OAP ACO 601 B 1 HETATM 38 C C9P ACO . . . N 4 260.447 207.396 237.195 1 20 ? C9P ACO 601 B 1 HETATM 39 O O9P ACO . . . N 4 261.552 207.848 236.988 1 20 ? O9P ACO 601 B 1 HETATM 40 N N8P ACO . . . N 4 260.087 206.839 238.343 1 20 ? N8P ACO 601 B 1 HETATM 41 C C7P ACO . . . N 4 260.939 206.817 239.515 1 20 ? C7P ACO 601 B 1 HETATM 42 C C6P ACO . . . N 4 261.331 208.205 240.012 1 20 ? C6P ACO 601 B 1 HETATM 43 C C5P ACO . . . N 4 260.376 208.72 241.064 1 20 ? C5P ACO 601 B 1 HETATM 44 O O5P ACO . . . N 4 259.245 209.053 240.771 1 20 ? O5P ACO 601 B 1 HETATM 45 N N4P ACO . . . N 4 260.836 208.803 242.302 1 20 ? N4P ACO 601 B 1 HETATM 46 C C3P ACO . . . N 4 260.236 209.691 243.266 1 20 ? C3P ACO 601 B 1 HETATM 47 C C2P ACO . . . N 4 261.203 210.761 243.74 1 20 ? C2P ACO 601 B 1 HETATM 48 S S1P ACO . . . N 4 260.654 211.352 245.307 1 20 ? S1P ACO 601 B 1 HETATM 49 C C ACO . . . N 4 261.903 212.376 245.708 1 20 ? C ACO 601 B 1 HETATM 50 O O ACO . . . N 4 261.774 213.577 245.53 1 20 ? O ACO 601 B 1 HETATM 51 C CH3 ACO . . . N 4 263.152 211.787 246.287 1 20 ? CH3 ACO 601 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 108 _model_server_stats.create_model_time_ms 273 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 51 #