data_8XLH
#
_model_server_result.job_id            hyc6MQ_IFRkICNEBpXHQzA 
_model_server_result.datetime_utc      '2025-03-05 03:35:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xlh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":5103}' 
#
_entry.id    8XLH 
#
_exptl.entry_id    8XLH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 O N N 
? 6 S N N 
? 6 W N N 
? 6 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 3967 A GLU 3967 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc2 A OE2 GLU 3967 A GLU 3967 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc3 A SG CYS 4958 A CYS 4958 1_555 M ZN ZN . A ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc4 A SG CYS 4961 A CYS 4961 1_555 M ZN ZN . A ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc5 A ND1 HIS 4978 A HIS 4978 1_555 M ZN ZN . A ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc6 A O THR 5001 A THR 5001 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc7 D OE1 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc8 D OE2 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc9 D SG CYS 4958 D CYS 4958 1_555 Q ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc10 D SG CYS 4961 D CYS 4961 1_555 Q ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc11 D ND1 HIS 4978 D HIS 4978 1_555 Q ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc12 D O THR 5001 D THR 5001 1_555 R CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc13 G OE1 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc14 G OE2 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc15 G SG CYS 4958 C CYS 4958 1_555 U ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc16 G SG CYS 4961 C CYS 4961 1_555 U ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc17 G ND1 HIS 4978 C HIS 4978 1_555 U ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc18 G O THR 5001 C THR 5001 1_555 V CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc19 J OE1 GLU 3967 B GLU 3967 1_555 Z CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc20 J OE2 GLU 3967 B GLU 3967 1_555 Z CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc21 J SG CYS 4958 B CYS 4958 1_555 Y ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc22 J SG CYS 4961 B CYS 4961 1_555 Y ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc23 J ND1 HIS 4978 B HIS 4978 1_555 Y ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc24 J O THR 5001 B THR 5001 1_555 Z CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8XLH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 ZN A 1 5101 2 ZN ZN . 
N 5 CA A 1 5102 2 CA CA . 
O 6 ATP A 1 5103 1 ATP ATP . 
P 7 CFF A 1 5104 1 CFF CFF . 
Q 4 ZN D 1 5101 1 ZN ZN . 
R 5 CA D 1 5102 1 CA CA . 
S 6 ATP D 1 5103 2 ATP ATP . 
T 7 CFF D 1 5104 2 CFF CFF . 
U 4 ZN C 1 5101 3 ZN ZN . 
V 5 CA C 1 5102 3 CA CA . 
W 6 ATP C 1 5103 3 ATP ATP . 
X 7 CFF C 1 5104 3 CFF CFF . 
Y 4 ZN B 1 5101 4 ZN ZN . 
Z 5 CA B 1 5102 4 CA CA . 
AA 6 ATP B 1 5103 4 ATP ATP . 
BA 7 CFF B 1 5104 4 CFF CFF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . O 6 277.169 258.279 297.33 1 20 ? PG ATP 5103 A 1 
HETATM 2 O O1G ATP . . . O 6 278.177 259.366 297.059 1 20 ? O1G ATP 5103 A 1 
HETATM 3 O O2G ATP . . . O 6 277.354 257.051 296.473 1 20 ? O2G ATP 5103 A 1 
HETATM 4 O O3G ATP . . . O 6 276.945 257.992 298.793 1 20 ? O3G ATP 5103 A 1 
HETATM 5 P PB ATP . . . O 6 274.438 258.079 296.61 1 20 ? PB ATP 5103 A 1 
HETATM 6 O O1B ATP . . . O 6 274.688 256.638 296.974 1 20 ? O1B ATP 5103 A 1 
HETATM 7 O O2B ATP . . . O 6 273.283 258.819 297.234 1 20 ? O2B ATP 5103 A 1 
HETATM 8 O O3B ATP . . . O 6 275.78 258.938 296.851 1 20 ? O3B ATP 5103 A 1 
HETATM 9 P PA ATP . . . O 6 275.534 257.844 294.081 1 20 ? PA ATP 5103 A 1 
HETATM 10 O O1A ATP . . . O 6 275.898 256.396 294.281 1 20 ? O1A ATP 5103 A 1 
HETATM 11 O O2A ATP . . . O 6 276.577 258.913 294.28 1 20 ? O2A ATP 5103 A 1 
HETATM 12 O O3A ATP . . . O 6 274.276 258.176 295.018 1 20 ? O3A ATP 5103 A 1 
HETATM 13 O O5' ATP . . . O 6 274.91 258.015 292.612 1 20 ? O5' ATP 5103 A 1 
HETATM 14 C C5' ATP . . . O 6 274.028 257.033 292.074 1 20 ? C5' ATP 5103 A 1 
HETATM 15 C C4' ATP . . . O 6 272.663 257.147 292.726 1 20 ? C4' ATP 5103 A 1 
HETATM 16 O O4' ATP . . . O 6 272.251 258.507 292.685 1 20 ? O4' ATP 5103 A 1 
HETATM 17 C C3' ATP . . . O 6 271.626 256.33 291.986 1 20 ? C3' ATP 5103 A 1 
HETATM 18 O O3' ATP . . . O 6 270.781 255.656 292.91 1 20 ? O3' ATP 5103 A 1 
HETATM 19 C C2' ATP . . . O 6 270.851 257.324 291.163 1 20 ? C2' ATP 5103 A 1 
HETATM 20 O O2' ATP . . . O 6 269.45 257.073 291.16 1 20 ? O2' ATP 5103 A 1 
HETATM 21 C C1' ATP . . . O 6 271.136 258.657 291.812 1 20 ? C1' ATP 5103 A 1 
HETATM 22 N N9 ATP . . . O 6 271.421 259.589 290.714 1 20 ? N9 ATP 5103 A 1 
HETATM 23 C C8 ATP . . . O 6 272.575 260.208 290.414 1 20 ? C8 ATP 5103 A 1 
HETATM 24 N N7 ATP . . . O 6 272.412 260.98 289.312 1 20 ? N7 ATP 5103 A 1 
HETATM 25 C C5 ATP . . . O 6 271.142 260.843 288.916 1 20 ? C5 ATP 5103 A 1 
HETATM 26 C C6 ATP . . . O 6 270.305 261.356 287.838 1 20 ? C6 ATP 5103 A 1 
HETATM 27 N N6 ATP . . . O 6 270.805 262.209 286.931 1 20 ? N6 ATP 5103 A 1 
HETATM 28 N N1 ATP . . . O 6 269.033 260.951 287.784 1 20 ? N1 ATP 5103 A 1 
HETATM 29 C C2 ATP . . . O 6 268.512 260.1 288.676 1 20 ? C2 ATP 5103 A 1 
HETATM 30 N N3 ATP . . . O 6 269.215 259.586 289.684 1 20 ? N3 ATP 5103 A 1 
HETATM 31 C C4 ATP . . . O 6 270.502 259.92 289.838 1 20 ? C4 ATP 5103 A 1 
#
_model_server_stats.io_time_ms              126 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    1141 
_model_server_stats.query_time_ms           1044 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           31 
#