data_8XLR # _model_server_result.job_id Cdk8TJlxvcsh5KHeo7bWOQ _model_server_result.datetime_utc '2024-12-25 08:57:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 8XLR # _exptl.entry_id 8XLR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XLR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 370 A CYS 370 1_555 A SG CYS 395 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 379 A CYS 379 1_555 A SG CYS 836 A CYS 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 382 A CYS 382 1_555 A SG CYS 386 A CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 625 A CYS 625 1_555 A SG CYS 630 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 370 B CYS 370 1_555 B SG CYS 395 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 379 B CYS 379 1_555 B SG CYS 836 B CYS 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 382 B CYS 382 1_555 B SG CYS 386 B CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 625 B CYS 625 1_555 B SG CYS 630 B CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 375 A ASN 375 1_555 F C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 798 A ASN 798 1_555 E C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 806 A ASN 806 1_555 D C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 813 A ASN 813 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 B ND2 ASN 375 B ASN 375 1_555 NA C1 NAG . B NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 B ND2 ASN 798 B ASN 798 1_555 MA C1 NAG . B NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B ND2 ASN 806 B ASN 806 1_555 LA C1 NAG . B NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 B ND2 ASN 813 B ASN 813 1_555 KA C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A OD1 ASN 651 A ASN 651 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc2 A OE2 GLU 654 A GLU 654 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A OE1 GLU 702 A GLU 702 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc4 A OE1 GLU 705 A GLU 705 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc5 A OE2 GLU 705 A GLU 705 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc6 A OE2 GLU 734 A GLU 734 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc7 A OD2 ASP 738 A ASP 738 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc8 B OD1 ASN 651 B ASN 651 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc9 B OE2 GLU 654 B GLU 654 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 B OE1 GLU 702 B GLU 702 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc11 B OE1 GLU 705 B GLU 705 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc12 B OE2 GLU 705 B GLU 705 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 B OE2 GLU 734 B GLU 734 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc14 B OD2 ASP 738 B ASP 738 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 354 n n C1 O1 NAG sing 355 n n C1 O5 NAG sing 356 n n C1 H1 NAG sing 357 n n C2 C3 NAG sing 358 n n C2 N2 NAG sing 359 n n C2 H2 NAG sing 360 n n C3 C4 NAG sing 361 n n C3 O3 NAG sing 362 n n C3 H3 NAG sing 363 n n C4 C5 NAG sing 364 n n C4 O4 NAG sing 365 n n C4 H4 NAG sing 366 n n C5 C6 NAG sing 367 n n C5 O5 NAG sing 368 n n C5 H5 NAG sing 369 n n C6 O6 NAG sing 370 n n C6 H61 NAG sing 371 n n C6 H62 NAG sing 372 n n C7 C8 NAG sing 373 n n C7 N2 NAG sing 374 n n C7 O7 NAG doub 375 n n C8 H81 NAG sing 376 n n C8 H82 NAG sing 377 n n C8 H83 NAG sing 378 n n N2 HN2 NAG sing 379 n n O1 HO1 NAG sing 380 n n O3 HO3 NAG sing 381 n n O4 HO4 NAG sing 382 n n O6 HO6 NAG sing 383 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8XLR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1001 914 NAG NAG . D 2 NAG A 1 1002 915 NAG NAG . E 2 NAG A 1 1003 916 NAG NAG . F 2 NAG A 1 1004 918 NAG NAG . G 3 C14 A 1 1005 919 C14 C14 . H 3 C14 A 1 1006 920 C14 C14 . I 3 C14 A 1 1007 922 C14 C14 . J 3 C14 A 1 1008 924 C14 C14 . K 3 C14 A 1 1009 925 C14 C14 . L 3 C14 A 1 1010 926 C14 C14 . M 3 C14 A 1 1011 928 C14 C14 . N 3 C14 A 1 1012 929 C14 C14 . O 3 C14 A 1 1013 930 C14 C14 . P 3 C14 A 1 1014 931 C14 C14 . Q 3 C14 A 1 1015 932 C14 C14 . R 3 C14 A 1 1016 933 C14 C14 . S 3 C14 A 1 1017 934 C14 C14 . T 3 C14 A 1 1018 935 C14 C14 . U 3 C14 A 1 1019 936 C14 C14 . V 3 C14 A 1 1020 937 C14 C14 . W 3 C14 A 1 1021 938 C14 C14 . X 3 C14 A 1 1022 939 C14 C14 . Y 3 C14 A 1 1023 940 C14 C14 . Z 3 C14 A 1 1024 942 C14 C14 . AA 3 C14 A 1 1025 943 C14 C14 . BA 3 C14 A 1 1026 944 C14 C14 . CA 3 C14 A 1 1027 945 C14 C14 . DA 3 C14 A 1 1028 946 C14 C14 . EA 4 CA A 1 1029 1001 CA CA . FA 4 CA A 1 1030 1002 CA CA . GA 5 JGX A 1 1031 1003 JGX LIG . HA 6 HEX A 1 1032 947 HEX HEX . IA 3 C14 B 1 1001 921 C14 C14 . JA 6 HEX B 1 1002 947 HEX HEX . KA 2 NAG B 1 1003 914 NAG NAG . LA 2 NAG B 1 1004 915 NAG NAG . MA 2 NAG B 1 1005 916 NAG NAG . NA 2 NAG B 1 1006 918 NAG NAG . OA 3 C14 B 1 1007 919 C14 C14 . PA 3 C14 B 1 1008 920 C14 C14 . QA 3 C14 B 1 1009 921 C14 C14 . RA 3 C14 B 1 1010 922 C14 C14 . SA 3 C14 B 1 1011 924 C14 C14 . TA 3 C14 B 1 1012 925 C14 C14 . UA 3 C14 B 1 1013 926 C14 C14 . VA 3 C14 B 1 1014 928 C14 C14 . WA 3 C14 B 1 1015 929 C14 C14 . XA 3 C14 B 1 1016 930 C14 C14 . YA 3 C14 B 1 1017 931 C14 C14 . ZA 3 C14 B 1 1018 932 C14 C14 . AB 3 C14 B 1 1019 933 C14 C14 . BB 3 C14 B 1 1020 934 C14 C14 . CB 3 C14 B 1 1021 935 C14 C14 . DB 3 C14 B 1 1022 936 C14 C14 . EB 3 C14 B 1 1023 937 C14 C14 . FB 3 C14 B 1 1024 938 C14 C14 . GB 3 C14 B 1 1025 939 C14 C14 . HB 3 C14 B 1 1026 940 C14 C14 . IB 3 C14 B 1 1027 942 C14 C14 . JB 3 C14 B 1 1028 943 C14 C14 . KB 3 C14 B 1 1029 944 C14 C14 . LB 3 C14 B 1 1030 945 C14 C14 . MB 3 C14 B 1 1031 946 C14 C14 . NB 4 CA B 1 1032 1001 CA CA . OB 4 CA B 1 1033 1002 CA CA . PB 5 JGX B 1 1034 1003 JGX LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 189.807 174.651 193.04 1 71.12 ? C1 NAG 1003 A 1 HETATM 2 C C2 NAG . . . E 2 190.682 175.88 193.26 1 72.09 ? C2 NAG 1003 A 1 HETATM 3 C C3 NAG . . . E 2 191.823 175.544 194.216 1 73.05 ? C3 NAG 1003 A 1 HETATM 4 C C4 NAG . . . E 2 191.28 174.937 195.503 1 73.69 ? C4 NAG 1003 A 1 HETATM 5 C C5 NAG . . . E 2 190.352 173.763 195.192 1 74.83 ? C5 NAG 1003 A 1 HETATM 6 C C6 NAG . . . E 2 189.666 173.213 196.419 1 72.54 ? C6 NAG 1003 A 1 HETATM 7 C C7 NAG . . . E 2 190.789 177.526 191.443 1 72.95 ? C7 NAG 1003 A 1 HETATM 8 C C8 NAG . . . E 2 191.438 177.898 190.145 1 72.24 ? C8 NAG 1003 A 1 HETATM 9 N N2 NAG . . . E 2 191.204 176.384 192 1 71.37 ? N2 NAG 1003 A 1 HETATM 10 O O3 NAG . . . E 2 192.56 176.726 194.508 1 74.26 ? O3 NAG 1003 A 1 HETATM 11 O O4 NAG . . . E 2 192.358 174.481 196.313 1 76.07 ? O4 NAG 1003 A 1 HETATM 12 O O5 NAG . . . E 2 189.312 174.184 194.297 1 74.22 ? O5 NAG 1003 A 1 HETATM 13 O O6 NAG . . . E 2 188.343 173.719 196.526 1 73.01 ? O6 NAG 1003 A 1 HETATM 14 O O7 NAG . . . E 2 189.926 178.226 191.964 1 71.52 ? O7 NAG 1003 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #