data_8XLR
#
_model_server_result.job_id            2nGyt58f82MVbqP4NfCd0A 
_model_server_result.datetime_utc      '2024-12-25 09:25:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xlr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":1027}' 
#
_entry.id    8XLR 
#
_exptl.entry_id    8XLR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              198.388 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TETRADECANE 
_entity.pdbx_number_of_molecules    50 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XLR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XLR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 IA N N 
? 3 OA N N 
? 3 PA N N 
? 3 QA N N 
? 3 RA N N 
? 3 SA N N 
? 3 TA N N 
? 3 UA N N 
? 3 VA N N 
? 3 WA N N 
? 3 XA N N 
? 3 YA N N 
? 3 ZA N N 
? 3 AB N N 
? 3 BB N N 
? 3 CB N N 
? 3 DB N N 
? 3 EB N N 
? 3 FB N N 
? 3 GB N N 
? 3 HB N N 
? 3 IB N N 
? 3 JB N N 
? 3 KB N N 
? 3 LB N N 
? 3 MB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 370 A CYS 370 1_555 A SG CYS 395 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 379 A CYS 379 1_555 A SG CYS 836 A CYS 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 382 A CYS 382 1_555 A SG CYS 386 A CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 625 A CYS 625 1_555 A SG CYS 630 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 370 B CYS 370 1_555 B SG CYS 395 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 379 B CYS 379 1_555 B SG CYS 836 B CYS 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 B SG CYS 382 B CYS 382 1_555 B SG CYS 386 B CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 B SG CYS 625 B CYS 625 1_555 B SG CYS 630 B CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 375 A ASN 375 1_555 F C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 798 A ASN 798 1_555 E C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 806 A ASN 806 1_555 D C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 A ND2 ASN 813 A ASN 813 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 B ND2 ASN 375 B ASN 375 1_555 NA C1 NAG . B NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale6 B ND2 ASN 798 B ASN 798 1_555 MA C1 NAG . B NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale7 B ND2 ASN 806 B ASN 806 1_555 LA C1 NAG . B NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale8 B ND2 ASN 813 B ASN 813 1_555 KA C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
metalc ? metalc1 A OD1 ASN 651 A ASN 651 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc2 A OE2 GLU 654 A GLU 654 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 A OE1 GLU 702 A GLU 702 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
metalc ? metalc4 A OE1 GLU 705 A GLU 705 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? 
metalc ? metalc5 A OE2 GLU 705 A GLU 705 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc6 A OE2 GLU 734 A GLU 734 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc7 A OD2 ASP 738 A ASP 738 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? 
metalc ? metalc8 B OD1 ASN 651 B ASN 651 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc9 B OE2 GLU 654 B GLU 654 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc10 B OE1 GLU 702 B GLU 702 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
metalc ? metalc11 B OE1 GLU 705 B GLU 705 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? 
metalc ? metalc12 B OE2 GLU 705 B GLU 705 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc13 B OE2 GLU 734 B GLU 734 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc14 B OD2 ASP 738 B ASP 738 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? 
#
_chem_comp.formula           'C14 H30' 
_chem_comp.formula_weight    198.388 
_chem_comp.id                C14 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TETRADECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 C14 sing 70 n n 
C01 H011 C14 sing 71 n n 
C01 H012 C14 sing 72 n n 
C01 H013 C14 sing 73 n n 
C02 C03 C14 sing 74 n n 
C02 H021 C14 sing 75 n n 
C02 H022 C14 sing 76 n n 
C03 C04 C14 sing 77 n n 
C03 H031 C14 sing 78 n n 
C03 H032 C14 sing 79 n n 
C04 C05 C14 sing 80 n n 
C04 H041 C14 sing 81 n n 
C04 H042 C14 sing 82 n n 
C05 C06 C14 sing 83 n n 
C05 H051 C14 sing 84 n n 
C05 H052 C14 sing 85 n n 
C06 C07 C14 sing 86 n n 
C06 H061 C14 sing 87 n n 
C06 H062 C14 sing 88 n n 
C07 C08 C14 sing 89 n n 
C07 H071 C14 sing 90 n n 
C07 H072 C14 sing 91 n n 
C08 C09 C14 sing 92 n n 
C08 H081 C14 sing 93 n n 
C08 H082 C14 sing 94 n n 
C09 C10 C14 sing 95 n n 
C09 H091 C14 sing 96 n n 
C09 H092 C14 sing 97 n n 
C10 C11 C14 sing 98 n n 
C10 H101 C14 sing 99 n n 
C10 H102 C14 sing 100 n n 
C11 C12 C14 sing 101 n n 
C11 H111 C14 sing 102 n n 
C11 H112 C14 sing 103 n n 
C12 C13 C14 sing 104 n n 
C12 H121 C14 sing 105 n n 
C12 H122 C14 sing 106 n n 
C13 C14 C14 sing 107 n n 
C13 H131 C14 sing 108 n n 
C13 H132 C14 sing 109 n n 
C14 H141 C14 sing 110 n n 
C14 H142 C14 sing 111 n n 
C14 H143 C14 sing 112 n n 
#
_atom_sites.entry_id                     8XLR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1001 914 NAG NAG . 
D 2 NAG A 1 1002 915 NAG NAG . 
E 2 NAG A 1 1003 916 NAG NAG . 
F 2 NAG A 1 1004 918 NAG NAG . 
G 3 C14 A 1 1005 919 C14 C14 . 
H 3 C14 A 1 1006 920 C14 C14 . 
I 3 C14 A 1 1007 922 C14 C14 . 
J 3 C14 A 1 1008 924 C14 C14 . 
K 3 C14 A 1 1009 925 C14 C14 . 
L 3 C14 A 1 1010 926 C14 C14 . 
M 3 C14 A 1 1011 928 C14 C14 . 
N 3 C14 A 1 1012 929 C14 C14 . 
O 3 C14 A 1 1013 930 C14 C14 . 
P 3 C14 A 1 1014 931 C14 C14 . 
Q 3 C14 A 1 1015 932 C14 C14 . 
R 3 C14 A 1 1016 933 C14 C14 . 
S 3 C14 A 1 1017 934 C14 C14 . 
T 3 C14 A 1 1018 935 C14 C14 . 
U 3 C14 A 1 1019 936 C14 C14 . 
V 3 C14 A 1 1020 937 C14 C14 . 
W 3 C14 A 1 1021 938 C14 C14 . 
X 3 C14 A 1 1022 939 C14 C14 . 
Y 3 C14 A 1 1023 940 C14 C14 . 
Z 3 C14 A 1 1024 942 C14 C14 . 
AA 3 C14 A 1 1025 943 C14 C14 . 
BA 3 C14 A 1 1026 944 C14 C14 . 
CA 3 C14 A 1 1027 945 C14 C14 . 
DA 3 C14 A 1 1028 946 C14 C14 . 
EA 4 CA A 1 1029 1001 CA CA . 
FA 4 CA A 1 1030 1002 CA CA . 
GA 5 JGX A 1 1031 1003 JGX LIG . 
HA 6 HEX A 1 1032 947 HEX HEX . 
IA 3 C14 B 1 1001 921 C14 C14 . 
JA 6 HEX B 1 1002 947 HEX HEX . 
KA 2 NAG B 1 1003 914 NAG NAG . 
LA 2 NAG B 1 1004 915 NAG NAG . 
MA 2 NAG B 1 1005 916 NAG NAG . 
NA 2 NAG B 1 1006 918 NAG NAG . 
OA 3 C14 B 1 1007 919 C14 C14 . 
PA 3 C14 B 1 1008 920 C14 C14 . 
QA 3 C14 B 1 1009 921 C14 C14 . 
RA 3 C14 B 1 1010 922 C14 C14 . 
SA 3 C14 B 1 1011 924 C14 C14 . 
TA 3 C14 B 1 1012 925 C14 C14 . 
UA 3 C14 B 1 1013 926 C14 C14 . 
VA 3 C14 B 1 1014 928 C14 C14 . 
WA 3 C14 B 1 1015 929 C14 C14 . 
XA 3 C14 B 1 1016 930 C14 C14 . 
YA 3 C14 B 1 1017 931 C14 C14 . 
ZA 3 C14 B 1 1018 932 C14 C14 . 
AB 3 C14 B 1 1019 933 C14 C14 . 
BB 3 C14 B 1 1020 934 C14 C14 . 
CB 3 C14 B 1 1021 935 C14 C14 . 
DB 3 C14 B 1 1022 936 C14 C14 . 
EB 3 C14 B 1 1023 937 C14 C14 . 
FB 3 C14 B 1 1024 938 C14 C14 . 
GB 3 C14 B 1 1025 939 C14 C14 . 
HB 3 C14 B 1 1026 940 C14 C14 . 
IB 3 C14 B 1 1027 942 C14 C14 . 
JB 3 C14 B 1 1028 943 C14 C14 . 
KB 3 C14 B 1 1029 944 C14 C14 . 
LB 3 C14 B 1 1030 945 C14 C14 . 
MB 3 C14 B 1 1031 946 C14 C14 . 
NB 4 CA B 1 1032 1001 CA CA . 
OB 4 CA B 1 1033 1002 CA CA . 
PB 5 JGX B 1 1034 1003 JGX LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 C14 . . . CA 3 202.038 152.515 150.124 1 50.22 ? C01 C14 1027 A 1 
HETATM 2 C C02 C14 . . . CA 3 202.601 153.578 149.19 1 49.88 ? C02 C14 1027 A 1 
HETATM 3 C C03 C14 . . . CA 3 202.874 153.042 147.79 1 52.91 ? C03 C14 1027 A 1 
HETATM 4 C C04 C14 . . . CA 3 204.045 152.07 147.724 1 52.43 ? C04 C14 1027 A 1 
HETATM 5 C C05 C14 . . . CA 3 204.079 151.268 146.429 1 50.39 ? C05 C14 1027 A 1 
HETATM 6 C C06 C14 . . . CA 3 205.362 150.466 146.246 1 52.59 ? C06 C14 1027 A 1 
HETATM 7 C C07 C14 . . . CA 3 205.318 149.535 145.041 1 55.18 ? C07 C14 1027 A 1 
HETATM 8 C C08 C14 . . . CA 3 206.7 149.173 144.512 1 55.34 ? C08 C14 1027 A 1 
HETATM 9 C C09 C14 . . . CA 3 207.529 150.397 144.143 1 52.96 ? C09 C14 1027 A 1 
HETATM 10 C C10 C14 . . . CA 3 208.783 150.059 143.347 1 51.07 ? C10 C14 1027 A 1 
HETATM 11 C C11 C14 . . . CA 3 209.527 151.294 142.853 1 52.78 ? C11 C14 1027 A 1 
HETATM 12 C C12 C14 . . . CA 3 210.674 150.962 141.906 1 56.18 ? C12 C14 1027 A 1 
HETATM 13 C C13 C14 . . . CA 3 210.235 150.159 140.687 1 54.65 ? C13 C14 1027 A 1 
HETATM 14 C C14 C14 . . . CA 3 211.378 149.891 139.717 1 51.15 ? C14 C14 1027 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#