data_8XLR # _model_server_result.job_id lE94irZicXlojK8_Yt65BQ _model_server_result.datetime_utc '2024-12-25 09:14:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":1030}' # _entry.id 8XLR # _exptl.entry_id 8XLR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XLR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 EA N N ? 4 FA N N ? 4 NB N N ? 4 OB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 370 A CYS 370 1_555 A SG CYS 395 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 379 A CYS 379 1_555 A SG CYS 836 A CYS 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 382 A CYS 382 1_555 A SG CYS 386 A CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 625 A CYS 625 1_555 A SG CYS 630 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 370 B CYS 370 1_555 B SG CYS 395 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 379 B CYS 379 1_555 B SG CYS 836 B CYS 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 382 B CYS 382 1_555 B SG CYS 386 B CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 625 B CYS 625 1_555 B SG CYS 630 B CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 375 A ASN 375 1_555 F C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 798 A ASN 798 1_555 E C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 806 A ASN 806 1_555 D C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 813 A ASN 813 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 B ND2 ASN 375 B ASN 375 1_555 NA C1 NAG . B NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 B ND2 ASN 798 B ASN 798 1_555 MA C1 NAG . B NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B ND2 ASN 806 B ASN 806 1_555 LA C1 NAG . B NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 B ND2 ASN 813 B ASN 813 1_555 KA C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A OD1 ASN 651 A ASN 651 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc2 A OE2 GLU 654 A GLU 654 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A OE1 GLU 702 A GLU 702 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc4 A OE1 GLU 705 A GLU 705 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc5 A OE2 GLU 705 A GLU 705 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc6 A OE2 GLU 734 A GLU 734 1_555 FA CA CA . A CA 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc7 A OD2 ASP 738 A ASP 738 1_555 EA CA CA . A CA 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc8 B OD1 ASN 651 B ASN 651 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc9 B OE2 GLU 654 B GLU 654 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 B OE1 GLU 702 B GLU 702 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc11 B OE1 GLU 705 B GLU 705 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc12 B OE2 GLU 705 B GLU 705 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 B OE2 GLU 734 B GLU 734 1_555 OB CA CA . B CA 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc14 B OD2 ASP 738 B ASP 738 1_555 NB CA CA . B CA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8XLR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1001 914 NAG NAG . D 2 NAG A 1 1002 915 NAG NAG . E 2 NAG A 1 1003 916 NAG NAG . F 2 NAG A 1 1004 918 NAG NAG . G 3 C14 A 1 1005 919 C14 C14 . H 3 C14 A 1 1006 920 C14 C14 . I 3 C14 A 1 1007 922 C14 C14 . J 3 C14 A 1 1008 924 C14 C14 . K 3 C14 A 1 1009 925 C14 C14 . L 3 C14 A 1 1010 926 C14 C14 . M 3 C14 A 1 1011 928 C14 C14 . N 3 C14 A 1 1012 929 C14 C14 . O 3 C14 A 1 1013 930 C14 C14 . P 3 C14 A 1 1014 931 C14 C14 . Q 3 C14 A 1 1015 932 C14 C14 . R 3 C14 A 1 1016 933 C14 C14 . S 3 C14 A 1 1017 934 C14 C14 . T 3 C14 A 1 1018 935 C14 C14 . U 3 C14 A 1 1019 936 C14 C14 . V 3 C14 A 1 1020 937 C14 C14 . W 3 C14 A 1 1021 938 C14 C14 . X 3 C14 A 1 1022 939 C14 C14 . Y 3 C14 A 1 1023 940 C14 C14 . Z 3 C14 A 1 1024 942 C14 C14 . AA 3 C14 A 1 1025 943 C14 C14 . BA 3 C14 A 1 1026 944 C14 C14 . CA 3 C14 A 1 1027 945 C14 C14 . DA 3 C14 A 1 1028 946 C14 C14 . EA 4 CA A 1 1029 1001 CA CA . FA 4 CA A 1 1030 1002 CA CA . GA 5 JGX A 1 1031 1003 JGX LIG . HA 6 HEX A 1 1032 947 HEX HEX . IA 3 C14 B 1 1001 921 C14 C14 . JA 6 HEX B 1 1002 947 HEX HEX . KA 2 NAG B 1 1003 914 NAG NAG . LA 2 NAG B 1 1004 915 NAG NAG . MA 2 NAG B 1 1005 916 NAG NAG . NA 2 NAG B 1 1006 918 NAG NAG . OA 3 C14 B 1 1007 919 C14 C14 . PA 3 C14 B 1 1008 920 C14 C14 . QA 3 C14 B 1 1009 921 C14 C14 . RA 3 C14 B 1 1010 922 C14 C14 . SA 3 C14 B 1 1011 924 C14 C14 . TA 3 C14 B 1 1012 925 C14 C14 . UA 3 C14 B 1 1013 926 C14 C14 . VA 3 C14 B 1 1014 928 C14 C14 . WA 3 C14 B 1 1015 929 C14 C14 . XA 3 C14 B 1 1016 930 C14 C14 . YA 3 C14 B 1 1017 931 C14 C14 . ZA 3 C14 B 1 1018 932 C14 C14 . AB 3 C14 B 1 1019 933 C14 C14 . BB 3 C14 B 1 1020 934 C14 C14 . CB 3 C14 B 1 1021 935 C14 C14 . DB 3 C14 B 1 1022 936 C14 C14 . EB 3 C14 B 1 1023 937 C14 C14 . FB 3 C14 B 1 1024 938 C14 C14 . GB 3 C14 B 1 1025 939 C14 C14 . HB 3 C14 B 1 1026 940 C14 C14 . IB 3 C14 B 1 1027 942 C14 C14 . JB 3 C14 B 1 1028 943 C14 C14 . KB 3 C14 B 1 1029 944 C14 C14 . LB 3 C14 B 1 1030 945 C14 C14 . MB 3 C14 B 1 1031 946 C14 C14 . NB 4 CA B 1 1032 1001 CA CA . OB 4 CA B 1 1033 1002 CA CA . PB 5 JGX B 1 1034 1003 JGX LIG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id FA _atom_site.label_entity_id 4 _atom_site.Cartn_x 190.872 _atom_site.Cartn_y 144.169 _atom_site.Cartn_z 146.934 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1030 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #