data_8XLZ # _model_server_result.job_id pxra1-MQUSDVdM5eJTacNA _model_server_result.datetime_utc '2025-09-04 00:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xlz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8XLZ # _exptl.entry_id 8XLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.42 _cell.angle_gamma 90 _cell.entry_id 8XLZ _cell.length_a 139.747 _cell.length_b 53.21 _cell.length_c 77.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 95 A ASP 95 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 A OE1 GLN 213 A GLN 213 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 C O2A UDP . A UDP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc4 C O2B UDP . A UDP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc5 C O3B UDP . A UDP 301 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 D MG MG . A MG 302 1_555 J O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 D MG MG . A MG 302 1_555 J O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 E MG MG . A MG 303 1_555 J O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc9 E MG MG . A MG 303 1_555 J O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc10 E MG MG . A MG 303 1_555 J O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc11 E MG MG . A MG 303 1_555 J O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc12 E MG MG . A MG 303 1_555 J O HOH . A HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc13 F MG MG . A MG 304 1_555 J O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc14 F MG MG . A MG 304 1_555 J O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc15 F MG MG . A MG 304 1_555 J O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc16 F MG MG . A MG 304 1_555 J O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc17 F MG MG . A MG 304 1_555 J O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc18 B OD2 ASP 95 B ASP 95 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc19 B OE1 GLN 213 B GLN 213 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc20 G O1A UDP . B UDP 301 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc21 G O1B UDP . B UDP 301 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc22 H MG MG . B MG 302 1_555 K O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc23 H MG MG . B MG 302 1_555 K O HOH . B HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc24 I MG MG . B MG 303 1_555 K O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc25 I MG MG . B MG 303 1_555 K O HOH . B HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc26 I MG MG . B MG 303 1_555 K O HOH . B HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc27 I MG MG . B MG 303 1_555 K O HOH . B HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8XLZ _atom_sites.fract_transf_matrix[1][1] 0.007156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003555 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UDP A 1 301 1 UDP UDP . D 3 MG A 1 302 1 MG MG . E 3 MG A 1 303 3 MG MG . F 3 MG A 1 304 4 MG MG . G 2 UDP B 1 301 2 UDP UDP . H 3 MG B 1 302 2 MG MG . I 3 MG B 1 303 5 MG MG . J 4 HOH A 1 401 24 HOH HOH . J 4 HOH A 2 402 21 HOH HOH . J 4 HOH A 3 403 64 HOH HOH . J 4 HOH A 4 404 7 HOH HOH . J 4 HOH A 5 405 159 HOH HOH . J 4 HOH A 6 406 53 HOH HOH . J 4 HOH A 7 407 152 HOH HOH . J 4 HOH A 8 408 26 HOH HOH . J 4 HOH A 9 409 156 HOH HOH . J 4 HOH A 10 410 45 HOH HOH . J 4 HOH A 11 411 8 HOH HOH . J 4 HOH A 12 412 78 HOH HOH . J 4 HOH A 13 413 121 HOH HOH . J 4 HOH A 14 414 6 HOH HOH . J 4 HOH A 15 415 72 HOH HOH . J 4 HOH A 16 416 118 HOH HOH . J 4 HOH A 17 417 63 HOH HOH . J 4 HOH A 18 418 140 HOH HOH . J 4 HOH A 19 419 41 HOH HOH . J 4 HOH A 20 420 117 HOH HOH . J 4 HOH A 21 421 52 HOH HOH . J 4 HOH A 22 422 48 HOH HOH . J 4 HOH A 23 423 30 HOH HOH . J 4 HOH A 24 424 56 HOH HOH . J 4 HOH A 25 425 131 HOH HOH . J 4 HOH A 26 426 27 HOH HOH . J 4 HOH A 27 427 37 HOH HOH . J 4 HOH A 28 428 34 HOH HOH . J 4 HOH A 29 429 13 HOH HOH . J 4 HOH A 30 430 28 HOH HOH . J 4 HOH A 31 431 65 HOH HOH . J 4 HOH A 32 432 54 HOH HOH . J 4 HOH A 33 433 66 HOH HOH . J 4 HOH A 34 434 154 HOH HOH . J 4 HOH A 35 435 9 HOH HOH . J 4 HOH A 36 436 160 HOH HOH . J 4 HOH A 37 437 18 HOH HOH . J 4 HOH A 38 438 166 HOH HOH . J 4 HOH A 39 439 161 HOH HOH . J 4 HOH A 40 440 126 HOH HOH . J 4 HOH A 41 441 188 HOH HOH . J 4 HOH A 42 442 22 HOH HOH . J 4 HOH A 43 443 11 HOH HOH . J 4 HOH A 44 444 31 HOH HOH . J 4 HOH A 45 445 158 HOH HOH . J 4 HOH A 46 446 150 HOH HOH . J 4 HOH A 47 447 127 HOH HOH . J 4 HOH A 48 448 138 HOH HOH . J 4 HOH A 49 449 77 HOH HOH . J 4 HOH A 50 450 79 HOH HOH . J 4 HOH A 51 451 16 HOH HOH . J 4 HOH A 52 452 130 HOH HOH . J 4 HOH A 53 453 120 HOH HOH . J 4 HOH A 54 454 50 HOH HOH . J 4 HOH A 55 455 10 HOH HOH . J 4 HOH A 56 456 15 HOH HOH . J 4 HOH A 57 457 124 HOH HOH . J 4 HOH A 58 458 123 HOH HOH . J 4 HOH A 59 459 74 HOH HOH . J 4 HOH A 60 460 69 HOH HOH . J 4 HOH A 61 461 162 HOH HOH . J 4 HOH A 62 462 44 HOH HOH . J 4 HOH A 63 463 17 HOH HOH . J 4 HOH A 64 464 23 HOH HOH . J 4 HOH A 65 465 57 HOH HOH . J 4 HOH A 66 466 39 HOH HOH . J 4 HOH A 67 467 12 HOH HOH . J 4 HOH A 68 468 73 HOH HOH . J 4 HOH A 69 469 5 HOH HOH . J 4 HOH A 70 470 163 HOH HOH . J 4 HOH A 71 471 32 HOH HOH . J 4 HOH A 72 472 46 HOH HOH . J 4 HOH A 73 473 198 HOH HOH . J 4 HOH A 74 474 157 HOH HOH . J 4 HOH A 75 475 55 HOH HOH . J 4 HOH A 76 476 149 HOH HOH . J 4 HOH A 77 477 14 HOH HOH . J 4 HOH A 78 478 181 HOH HOH . J 4 HOH A 79 479 122 HOH HOH . J 4 HOH A 80 480 35 HOH HOH . J 4 HOH A 81 481 129 HOH HOH . J 4 HOH A 82 482 40 HOH HOH . J 4 HOH A 83 483 185 HOH HOH . J 4 HOH A 84 484 58 HOH HOH . J 4 HOH A 85 485 139 HOH HOH . J 4 HOH A 86 486 42 HOH HOH . J 4 HOH A 87 487 36 HOH HOH . J 4 HOH A 88 488 33 HOH HOH . J 4 HOH A 89 489 20 HOH HOH . J 4 HOH A 90 490 47 HOH HOH . J 4 HOH A 91 491 182 HOH HOH . J 4 HOH A 92 492 51 HOH HOH . J 4 HOH A 93 493 155 HOH HOH . J 4 HOH A 94 494 132 HOH HOH . J 4 HOH A 95 495 135 HOH HOH . J 4 HOH A 96 496 133 HOH HOH . J 4 HOH A 97 497 125 HOH HOH . J 4 HOH A 98 498 38 HOH HOH . J 4 HOH A 99 499 151 HOH HOH . J 4 HOH A 100 500 186 HOH HOH . J 4 HOH A 101 501 119 HOH HOH . J 4 HOH A 102 502 128 HOH HOH . J 4 HOH A 103 503 165 HOH HOH . J 4 HOH A 104 504 29 HOH HOH . J 4 HOH A 105 505 164 HOH HOH . J 4 HOH A 106 506 136 HOH HOH . J 4 HOH A 107 507 134 HOH HOH . J 4 HOH A 108 508 75 HOH HOH . J 4 HOH A 109 509 190 HOH HOH . J 4 HOH A 110 510 76 HOH HOH . J 4 HOH A 111 511 137 HOH HOH . J 4 HOH A 112 512 153 HOH HOH . J 4 HOH A 113 513 25 HOH HOH . K 4 HOH B 1 401 2 HOH HOH . K 4 HOH B 2 402 106 HOH HOH . K 4 HOH B 3 403 179 HOH HOH . K 4 HOH B 4 404 98 HOH HOH . K 4 HOH B 5 405 3 HOH HOH . K 4 HOH B 6 406 115 HOH HOH . K 4 HOH B 7 407 195 HOH HOH . K 4 HOH B 8 408 71 HOH HOH . K 4 HOH B 9 409 144 HOH HOH . K 4 HOH B 10 410 62 HOH HOH . K 4 HOH B 11 411 176 HOH HOH . K 4 HOH B 12 412 174 HOH HOH . K 4 HOH B 13 413 84 HOH HOH . K 4 HOH B 14 414 197 HOH HOH . K 4 HOH B 15 415 1 HOH HOH . K 4 HOH B 16 416 191 HOH HOH . K 4 HOH B 17 417 173 HOH HOH . K 4 HOH B 18 418 80 HOH HOH . K 4 HOH B 19 419 67 HOH HOH . K 4 HOH B 20 420 170 HOH HOH . K 4 HOH B 21 421 59 HOH HOH . K 4 HOH B 22 422 108 HOH HOH . K 4 HOH B 23 423 143 HOH HOH . K 4 HOH B 24 424 96 HOH HOH . K 4 HOH B 25 425 141 HOH HOH . K 4 HOH B 26 426 19 HOH HOH . K 4 HOH B 27 427 91 HOH HOH . K 4 HOH B 28 428 60 HOH HOH . K 4 HOH B 29 429 94 HOH HOH . K 4 HOH B 30 430 49 HOH HOH . K 4 HOH B 31 431 70 HOH HOH . K 4 HOH B 32 432 68 HOH HOH . K 4 HOH B 33 433 175 HOH HOH . K 4 HOH B 34 434 196 HOH HOH . K 4 HOH B 35 435 112 HOH HOH . K 4 HOH B 36 436 171 HOH HOH . K 4 HOH B 37 437 95 HOH HOH . K 4 HOH B 38 438 61 HOH HOH . K 4 HOH B 39 439 105 HOH HOH . K 4 HOH B 40 440 180 HOH HOH . K 4 HOH B 41 441 193 HOH HOH . K 4 HOH B 42 442 116 HOH HOH . K 4 HOH B 43 443 85 HOH HOH . K 4 HOH B 44 444 87 HOH HOH . K 4 HOH B 45 445 86 HOH HOH . K 4 HOH B 46 446 183 HOH HOH . K 4 HOH B 47 447 189 HOH HOH . K 4 HOH B 48 448 192 HOH HOH . K 4 HOH B 49 449 93 HOH HOH . K 4 HOH B 50 450 82 HOH HOH . K 4 HOH B 51 451 107 HOH HOH . K 4 HOH B 52 452 187 HOH HOH . K 4 HOH B 53 453 104 HOH HOH . K 4 HOH B 54 454 113 HOH HOH . K 4 HOH B 55 455 145 HOH HOH . K 4 HOH B 56 456 83 HOH HOH . K 4 HOH B 57 457 43 HOH HOH . K 4 HOH B 58 458 97 HOH HOH . K 4 HOH B 59 459 110 HOH HOH . K 4 HOH B 60 460 81 HOH HOH . K 4 HOH B 61 461 177 HOH HOH . K 4 HOH B 62 462 103 HOH HOH . K 4 HOH B 63 463 92 HOH HOH . K 4 HOH B 64 464 102 HOH HOH . K 4 HOH B 65 465 194 HOH HOH . K 4 HOH B 66 466 169 HOH HOH . K 4 HOH B 67 467 168 HOH HOH . K 4 HOH B 68 468 146 HOH HOH . K 4 HOH B 69 469 167 HOH HOH . K 4 HOH B 70 470 99 HOH HOH . K 4 HOH B 71 471 89 HOH HOH . K 4 HOH B 72 472 172 HOH HOH . K 4 HOH B 73 473 90 HOH HOH . K 4 HOH B 74 474 147 HOH HOH . K 4 HOH B 75 475 184 HOH HOH . K 4 HOH B 76 476 101 HOH HOH . K 4 HOH B 77 477 109 HOH HOH . K 4 HOH B 78 478 88 HOH HOH . K 4 HOH B 79 479 100 HOH HOH . K 4 HOH B 80 480 178 HOH HOH . K 4 HOH B 81 481 148 HOH HOH . K 4 HOH B 82 482 114 HOH HOH . K 4 HOH B 83 483 111 HOH HOH . K 4 HOH B 84 484 142 HOH HOH . K 4 HOH B 85 485 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.21 _atom_site.Cartn_y -5.602 _atom_site.Cartn_z 16.548 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #