data_8XM4 # _model_server_result.job_id SucVPZ2LJ9K7yeliNaL6mg _model_server_result.datetime_utc '2024-11-27 18:45:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8XM4 # _exptl.entry_id 8XM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XM4 _cell.length_a 65.409 _cell.length_b 76.059 _cell.length_c 119.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 119 n n C1 C2 EDO sing 120 n n C1 H11 EDO sing 121 n n C1 H12 EDO sing 122 n n O1 HO1 EDO sing 123 n n C2 O2 EDO sing 124 n n C2 H21 EDO sing 125 n n C2 H22 EDO sing 126 n n O2 HO2 EDO sing 127 n n # _atom_sites.entry_id 8XM4 _atom_sites.fract_transf_matrix[1][1] 0.015288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 601 601 ATP ATP . C 3 XC9 A 1 602 1 XC9 C6 . D 4 EDO A 1 603 1 EDO EDO . E 4 EDO A 1 604 2 EDO EDO . F 4 EDO A 1 605 3 EDO EDO . G 4 EDO A 1 606 7 EDO EDO . H 5 HOH A 1 701 254 HOH HOH . H 5 HOH A 2 702 95 HOH HOH . H 5 HOH A 3 703 259 HOH HOH . H 5 HOH A 4 704 60 HOH HOH . H 5 HOH A 5 705 273 HOH HOH . H 5 HOH A 6 706 36 HOH HOH . H 5 HOH A 7 707 142 HOH HOH . H 5 HOH A 8 708 283 HOH HOH . H 5 HOH A 9 709 164 HOH HOH . H 5 HOH A 10 710 62 HOH HOH . H 5 HOH A 11 711 71 HOH HOH . H 5 HOH A 12 712 136 HOH HOH . H 5 HOH A 13 713 31 HOH HOH . H 5 HOH A 14 714 276 HOH HOH . H 5 HOH A 15 715 235 HOH HOH . H 5 HOH A 16 716 197 HOH HOH . H 5 HOH A 17 717 15 HOH HOH . H 5 HOH A 18 718 61 HOH HOH . H 5 HOH A 19 719 43 HOH HOH . H 5 HOH A 20 720 127 HOH HOH . H 5 HOH A 21 721 105 HOH HOH . H 5 HOH A 22 722 123 HOH HOH . H 5 HOH A 23 723 287 HOH HOH . H 5 HOH A 24 724 195 HOH HOH . H 5 HOH A 25 725 205 HOH HOH . H 5 HOH A 26 726 12 HOH HOH . H 5 HOH A 27 727 284 HOH HOH . H 5 HOH A 28 728 70 HOH HOH . H 5 HOH A 29 729 88 HOH HOH . H 5 HOH A 30 730 247 HOH HOH . H 5 HOH A 31 731 25 HOH HOH . H 5 HOH A 32 732 288 HOH HOH . H 5 HOH A 33 733 89 HOH HOH . H 5 HOH A 34 734 271 HOH HOH . H 5 HOH A 35 735 45 HOH HOH . H 5 HOH A 36 736 295 HOH HOH . H 5 HOH A 37 737 318 HOH HOH . H 5 HOH A 38 738 76 HOH HOH . H 5 HOH A 39 739 58 HOH HOH . H 5 HOH A 40 740 27 HOH HOH . H 5 HOH A 41 741 108 HOH HOH . H 5 HOH A 42 742 280 HOH HOH . H 5 HOH A 43 743 222 HOH HOH . H 5 HOH A 44 744 191 HOH HOH . H 5 HOH A 45 745 225 HOH HOH . H 5 HOH A 46 746 13 HOH HOH . H 5 HOH A 47 747 170 HOH HOH . H 5 HOH A 48 748 174 HOH HOH . H 5 HOH A 49 749 114 HOH HOH . H 5 HOH A 50 750 320 HOH HOH . H 5 HOH A 51 751 92 HOH HOH . H 5 HOH A 52 752 166 HOH HOH . H 5 HOH A 53 753 181 HOH HOH . H 5 HOH A 54 754 21 HOH HOH . H 5 HOH A 55 755 278 HOH HOH . H 5 HOH A 56 756 73 HOH HOH . H 5 HOH A 57 757 291 HOH HOH . H 5 HOH A 58 758 59 HOH HOH . H 5 HOH A 59 759 55 HOH HOH . H 5 HOH A 60 760 90 HOH HOH . H 5 HOH A 61 761 133 HOH HOH . H 5 HOH A 62 762 304 HOH HOH . H 5 HOH A 63 763 37 HOH HOH . H 5 HOH A 64 764 96 HOH HOH . H 5 HOH A 65 765 153 HOH HOH . H 5 HOH A 66 766 99 HOH HOH . H 5 HOH A 67 767 217 HOH HOH . H 5 HOH A 68 768 117 HOH HOH . H 5 HOH A 69 769 24 HOH HOH . H 5 HOH A 70 770 35 HOH HOH . H 5 HOH A 71 771 239 HOH HOH . H 5 HOH A 72 772 115 HOH HOH . H 5 HOH A 73 773 116 HOH HOH . H 5 HOH A 74 774 219 HOH HOH . H 5 HOH A 75 775 297 HOH HOH . H 5 HOH A 76 776 325 HOH HOH . H 5 HOH A 77 777 94 HOH HOH . H 5 HOH A 78 778 78 HOH HOH . H 5 HOH A 79 779 194 HOH HOH . H 5 HOH A 80 780 102 HOH HOH . H 5 HOH A 81 781 234 HOH HOH . H 5 HOH A 82 782 66 HOH HOH . H 5 HOH A 83 783 130 HOH HOH . H 5 HOH A 84 784 101 HOH HOH . H 5 HOH A 85 785 157 HOH HOH . H 5 HOH A 86 786 213 HOH HOH . H 5 HOH A 87 787 146 HOH HOH . H 5 HOH A 88 788 67 HOH HOH . H 5 HOH A 89 789 19 HOH HOH . H 5 HOH A 90 790 148 HOH HOH . H 5 HOH A 91 791 50 HOH HOH . H 5 HOH A 92 792 330 HOH HOH . H 5 HOH A 93 793 69 HOH HOH . H 5 HOH A 94 794 16 HOH HOH . H 5 HOH A 95 795 175 HOH HOH . H 5 HOH A 96 796 17 HOH HOH . H 5 HOH A 97 797 216 HOH HOH . H 5 HOH A 98 798 260 HOH HOH . H 5 HOH A 99 799 75 HOH HOH . H 5 HOH A 100 800 144 HOH HOH . H 5 HOH A 101 801 184 HOH HOH . H 5 HOH A 102 802 134 HOH HOH . H 5 HOH A 103 803 139 HOH HOH . H 5 HOH A 104 804 159 HOH HOH . H 5 HOH A 105 805 237 HOH HOH . H 5 HOH A 106 806 10 HOH HOH . H 5 HOH A 107 807 81 HOH HOH . H 5 HOH A 108 808 196 HOH HOH . H 5 HOH A 109 809 8 HOH HOH . H 5 HOH A 110 810 180 HOH HOH . H 5 HOH A 111 811 112 HOH HOH . H 5 HOH A 112 812 56 HOH HOH . H 5 HOH A 113 813 214 HOH HOH . H 5 HOH A 114 814 218 HOH HOH . H 5 HOH A 115 815 161 HOH HOH . H 5 HOH A 116 816 29 HOH HOH . H 5 HOH A 117 817 163 HOH HOH . H 5 HOH A 118 818 160 HOH HOH . H 5 HOH A 119 819 41 HOH HOH . H 5 HOH A 120 820 277 HOH HOH . H 5 HOH A 121 821 107 HOH HOH . H 5 HOH A 122 822 80 HOH HOH . H 5 HOH A 123 823 106 HOH HOH . H 5 HOH A 124 824 4 HOH HOH . H 5 HOH A 125 825 319 HOH HOH . H 5 HOH A 126 826 152 HOH HOH . H 5 HOH A 127 827 1 HOH HOH . H 5 HOH A 128 828 210 HOH HOH . H 5 HOH A 129 829 103 HOH HOH . H 5 HOH A 130 830 202 HOH HOH . H 5 HOH A 131 831 292 HOH HOH . H 5 HOH A 132 832 156 HOH HOH . H 5 HOH A 133 833 299 HOH HOH . H 5 HOH A 134 834 227 HOH HOH . H 5 HOH A 135 835 298 HOH HOH . H 5 HOH A 136 836 281 HOH HOH . H 5 HOH A 137 837 2 HOH HOH . H 5 HOH A 138 838 296 HOH HOH . H 5 HOH A 139 839 91 HOH HOH . H 5 HOH A 140 840 131 HOH HOH . H 5 HOH A 141 841 64 HOH HOH . H 5 HOH A 142 842 3 HOH HOH . H 5 HOH A 143 843 120 HOH HOH . H 5 HOH A 144 844 32 HOH HOH . H 5 HOH A 145 845 272 HOH HOH . H 5 HOH A 146 846 269 HOH HOH . H 5 HOH A 147 847 5 HOH HOH . H 5 HOH A 148 848 147 HOH HOH . H 5 HOH A 149 849 68 HOH HOH . H 5 HOH A 150 850 236 HOH HOH . H 5 HOH A 151 851 188 HOH HOH . H 5 HOH A 152 852 199 HOH HOH . H 5 HOH A 153 853 82 HOH HOH . H 5 HOH A 154 854 155 HOH HOH . H 5 HOH A 155 855 128 HOH HOH . H 5 HOH A 156 856 286 HOH HOH . H 5 HOH A 157 857 53 HOH HOH . H 5 HOH A 158 858 138 HOH HOH . H 5 HOH A 159 859 122 HOH HOH . H 5 HOH A 160 860 182 HOH HOH . H 5 HOH A 161 861 20 HOH HOH . H 5 HOH A 162 862 98 HOH HOH . H 5 HOH A 163 863 39 HOH HOH . H 5 HOH A 164 864 74 HOH HOH . H 5 HOH A 165 865 132 HOH HOH . H 5 HOH A 166 866 187 HOH HOH . H 5 HOH A 167 867 6 HOH HOH . H 5 HOH A 168 868 293 HOH HOH . H 5 HOH A 169 869 255 HOH HOH . H 5 HOH A 170 870 243 HOH HOH . H 5 HOH A 171 871 279 HOH HOH . H 5 HOH A 172 872 11 HOH HOH . H 5 HOH A 173 873 51 HOH HOH . H 5 HOH A 174 874 44 HOH HOH . H 5 HOH A 175 875 221 HOH HOH . H 5 HOH A 176 876 309 HOH HOH . H 5 HOH A 177 877 40 HOH HOH . H 5 HOH A 178 878 33 HOH HOH . H 5 HOH A 179 879 224 HOH HOH . H 5 HOH A 180 880 165 HOH HOH . H 5 HOH A 181 881 141 HOH HOH . H 5 HOH A 182 882 124 HOH HOH . H 5 HOH A 183 883 84 HOH HOH . H 5 HOH A 184 884 121 HOH HOH . H 5 HOH A 185 885 312 HOH HOH . H 5 HOH A 186 886 256 HOH HOH . H 5 HOH A 187 887 23 HOH HOH . H 5 HOH A 188 888 49 HOH HOH . H 5 HOH A 189 889 323 HOH HOH . H 5 HOH A 190 890 177 HOH HOH . H 5 HOH A 191 891 151 HOH HOH . H 5 HOH A 192 892 307 HOH HOH . H 5 HOH A 193 893 328 HOH HOH . H 5 HOH A 194 894 83 HOH HOH . H 5 HOH A 195 895 110 HOH HOH . H 5 HOH A 196 896 226 HOH HOH . H 5 HOH A 197 897 208 HOH HOH . H 5 HOH A 198 898 223 HOH HOH . H 5 HOH A 199 899 14 HOH HOH . H 5 HOH A 200 900 109 HOH HOH . H 5 HOH A 201 901 22 HOH HOH . H 5 HOH A 202 902 47 HOH HOH . H 5 HOH A 203 903 190 HOH HOH . H 5 HOH A 204 904 34 HOH HOH . H 5 HOH A 205 905 48 HOH HOH . H 5 HOH A 206 906 79 HOH HOH . H 5 HOH A 207 907 212 HOH HOH . H 5 HOH A 208 908 28 HOH HOH . H 5 HOH A 209 909 233 HOH HOH . H 5 HOH A 210 910 26 HOH HOH . H 5 HOH A 211 911 125 HOH HOH . H 5 HOH A 212 912 100 HOH HOH . H 5 HOH A 213 913 104 HOH HOH . H 5 HOH A 214 914 42 HOH HOH . H 5 HOH A 215 915 87 HOH HOH . H 5 HOH A 216 916 65 HOH HOH . H 5 HOH A 217 917 7 HOH HOH . H 5 HOH A 218 918 162 HOH HOH . H 5 HOH A 219 919 9 HOH HOH . H 5 HOH A 220 920 46 HOH HOH . H 5 HOH A 221 921 301 HOH HOH . H 5 HOH A 222 922 176 HOH HOH . H 5 HOH A 223 923 204 HOH HOH . H 5 HOH A 224 924 54 HOH HOH . H 5 HOH A 225 925 145 HOH HOH . H 5 HOH A 226 926 85 HOH HOH . H 5 HOH A 227 927 303 HOH HOH . H 5 HOH A 228 928 308 HOH HOH . H 5 HOH A 229 929 313 HOH HOH . H 5 HOH A 230 930 57 HOH HOH . H 5 HOH A 231 931 63 HOH HOH . H 5 HOH A 232 932 38 HOH HOH . H 5 HOH A 233 933 135 HOH HOH . H 5 HOH A 234 934 228 HOH HOH . H 5 HOH A 235 935 52 HOH HOH . H 5 HOH A 236 936 241 HOH HOH . H 5 HOH A 237 937 30 HOH HOH . H 5 HOH A 238 938 251 HOH HOH . H 5 HOH A 239 939 18 HOH HOH . H 5 HOH A 240 940 314 HOH HOH . H 5 HOH A 241 941 231 HOH HOH . H 5 HOH A 242 942 230 HOH HOH . H 5 HOH A 243 943 149 HOH HOH . H 5 HOH A 244 944 154 HOH HOH . H 5 HOH A 245 945 173 HOH HOH . H 5 HOH A 246 946 282 HOH HOH . H 5 HOH A 247 947 232 HOH HOH . H 5 HOH A 248 948 285 HOH HOH . H 5 HOH A 249 949 137 HOH HOH . H 5 HOH A 250 950 200 HOH HOH . H 5 HOH A 251 951 93 HOH HOH . H 5 HOH A 252 952 206 HOH HOH . H 5 HOH A 253 953 240 HOH HOH . H 5 HOH A 254 954 209 HOH HOH . H 5 HOH A 255 955 198 HOH HOH . H 5 HOH A 256 956 270 HOH HOH . H 5 HOH A 257 957 249 HOH HOH . H 5 HOH A 258 958 306 HOH HOH . H 5 HOH A 259 959 238 HOH HOH . H 5 HOH A 260 960 111 HOH HOH . H 5 HOH A 261 961 126 HOH HOH . H 5 HOH A 262 962 97 HOH HOH . H 5 HOH A 263 963 86 HOH HOH . H 5 HOH A 264 964 229 HOH HOH . H 5 HOH A 265 965 178 HOH HOH . H 5 HOH A 266 966 150 HOH HOH . H 5 HOH A 267 967 329 HOH HOH . H 5 HOH A 268 968 186 HOH HOH . H 5 HOH A 269 969 250 HOH HOH . H 5 HOH A 270 970 72 HOH HOH . H 5 HOH A 271 971 220 HOH HOH . H 5 HOH A 272 972 171 HOH HOH . H 5 HOH A 273 973 289 HOH HOH . H 5 HOH A 274 974 169 HOH HOH . H 5 HOH A 275 975 113 HOH HOH . H 5 HOH A 276 976 119 HOH HOH . H 5 HOH A 277 977 211 HOH HOH . H 5 HOH A 278 978 143 HOH HOH . H 5 HOH A 279 979 203 HOH HOH . H 5 HOH A 280 980 326 HOH HOH . H 5 HOH A 281 981 305 HOH HOH . H 5 HOH A 282 982 246 HOH HOH . H 5 HOH A 283 983 290 HOH HOH . H 5 HOH A 284 984 183 HOH HOH . H 5 HOH A 285 985 311 HOH HOH . H 5 HOH A 286 986 215 HOH HOH . H 5 HOH A 287 987 253 HOH HOH . H 5 HOH A 288 988 248 HOH HOH . H 5 HOH A 289 989 77 HOH HOH . H 5 HOH A 290 990 327 HOH HOH . H 5 HOH A 291 991 168 HOH HOH . H 5 HOH A 292 992 316 HOH HOH . H 5 HOH A 293 993 185 HOH HOH . H 5 HOH A 294 994 201 HOH HOH . H 5 HOH A 295 995 244 HOH HOH . H 5 HOH A 296 996 317 HOH HOH . H 5 HOH A 297 997 172 HOH HOH . H 5 HOH A 298 998 179 HOH HOH . H 5 HOH A 299 999 140 HOH HOH . H 5 HOH A 300 1000 322 HOH HOH . H 5 HOH A 301 1001 129 HOH HOH . H 5 HOH A 302 1002 193 HOH HOH . H 5 HOH A 303 1003 294 HOH HOH . H 5 HOH A 304 1004 245 HOH HOH . H 5 HOH A 305 1005 252 HOH HOH . H 5 HOH A 306 1006 242 HOH HOH . H 5 HOH A 307 1007 158 HOH HOH . H 5 HOH A 308 1008 207 HOH HOH . H 5 HOH A 309 1009 321 HOH HOH . H 5 HOH A 310 1010 167 HOH HOH . H 5 HOH A 311 1011 189 HOH HOH . H 5 HOH A 312 1012 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -9.515 5.349 -3.835 1 26.87 ? C1 EDO 603 A 1 HETATM 2 O O1 EDO . . . D 4 -10.52 5.731 -4.767 1 24.73 ? O1 EDO 603 A 1 HETATM 3 C C2 EDO . . . D 4 -8.341 4.866 -4.661 1 28.67 ? C2 EDO 603 A 1 HETATM 4 O O2 EDO . . . D 4 -8.666 3.627 -5.325 1 30 ? O2 EDO 603 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #