data_8XMO # _model_server_result.job_id pF_a3M0_mHjD0N6b2SNi5w _model_server_result.datetime_utc '2024-10-15 14:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2007}' # _entry.id 8XMO # _exptl.entry_id 8XMO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.708 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XMO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 K N N ? 6 L N N ? 6 P N N ? 6 Q N N ? 6 R N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 C CYS 50 1_555 A SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 55 C CYS 55 1_555 B SG CYS 938 A CYS 895 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 72 C CYS 72 1_555 A SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 318 A CYS 275 1_555 B SG CYS 367 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 B SG CYS 358 A CYS 315 1_555 B SG CYS 373 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf6 B SG CYS 940 A CYS 897 1_555 B SG CYS 946 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 B SG CYS 978 A CYS 935 1_555 B SG CYS 987 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 1393 A CYS 1350 1_555 B SG CYS 1413 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf9 B SG CYS 1758 A CYS 1715 1_555 B SG CYS 1773 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf10 C SG CYS 21 B CYS 21 1_555 C SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 40 B CYS 40 1_555 C SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? covale ? covale1 B ND2 ASN 326 A ASN 283 1_555 G C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B ND2 ASN 1395 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B ND2 ASN 1409 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B ND2 ASN 1418 A ASN 1375 1_555 F C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 C ND2 ASN 93 B ASN 93 1_555 T C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 C ND2 ASN 110 B ASN 110 1_555 V C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale7 C ND2 ASN 114 B ASN 114 1_555 W C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 C ND2 ASN 135 B ASN 135 1_555 U C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C26 H57 N O6 P 1' _chem_comp.formula_weight 510.708 _chem_comp.id LPE _chem_comp.mon_nstd_flag . _chem_comp.name 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LPC-ETHER # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LPE sing 192 n n C1 C2 LPE sing 193 n n C1 H11 LPE sing 194 n n C1 H12 LPE sing 195 n n O1 C11 LPE sing 196 n n C2 O2H LPE sing 197 n n C2 C3 LPE sing 198 n n C2 H21 LPE sing 199 n n O2H HO21 LPE sing 200 n n C3 O3 LPE sing 201 n n C3 H31 LPE sing 202 n n C3 H32 LPE sing 203 n n C11 C12 LPE sing 204 n n C11 H111 LPE sing 205 n n C11 H112 LPE sing 206 n n C12 C13 LPE sing 207 n n C12 H121 LPE sing 208 n n C12 H122 LPE sing 209 n n O3 P LPE sing 210 n n P O31 LPE doub 211 n n P O32 LPE sing 212 n n P O33 LPE sing 213 n n O32 HO31 LPE sing 214 n n O33 C31 LPE sing 215 n n C31 C32 LPE sing 216 n n C31 H311 LPE sing 217 n n C31 H312 LPE sing 218 n n C32 N LPE sing 219 n n C32 H321 LPE sing 220 n n C32 H322 LPE sing 221 n n N C1N LPE sing 222 n n N C2N LPE sing 223 n n N C3N LPE sing 224 n n C1N H1N1 LPE sing 225 n n C1N H1N2 LPE sing 226 n n C1N H1N3 LPE sing 227 n n C2N H2N1 LPE sing 228 n n C2N H2N2 LPE sing 229 n n C2N H2N3 LPE sing 230 n n C3N H3N1 LPE sing 231 n n C3N H3N2 LPE sing 232 n n C3N H3N3 LPE sing 233 n n C13 C14 LPE sing 234 n n C13 H131 LPE sing 235 n n C13 H132 LPE sing 236 n n C14 C15 LPE sing 237 n n C14 H141 LPE sing 238 n n C14 H142 LPE sing 239 n n C15 C16 LPE sing 240 n n C15 H151 LPE sing 241 n n C15 H152 LPE sing 242 n n C16 C17 LPE sing 243 n n C16 H161 LPE sing 244 n n C16 H162 LPE sing 245 n n C17 C18 LPE sing 246 n n C17 H171 LPE sing 247 n n C17 H172 LPE sing 248 n n C18 C19 LPE sing 249 n n C18 H181 LPE sing 250 n n C18 H182 LPE sing 251 n n C19 C20 LPE sing 252 n n C19 H191 LPE sing 253 n n C19 H192 LPE sing 254 n n C20 C21 LPE sing 255 n n C20 H201 LPE sing 256 n n C20 H202 LPE sing 257 n n C21 C22 LPE sing 258 n n C21 H211 LPE sing 259 n n C21 H212 LPE sing 260 n n C22 C23 LPE sing 261 n n C22 H221 LPE sing 262 n n C22 H222 LPE sing 263 n n C23 C24 LPE sing 264 n n C23 H231 LPE sing 265 n n C23 H232 LPE sing 266 n n C24 C25 LPE sing 267 n n C24 H241 LPE sing 268 n n C24 H242 LPE sing 269 n n C25 C26 LPE sing 270 n n C25 H251 LPE sing 271 n n C25 H252 LPE sing 272 n n C26 C27 LPE sing 273 n n C26 H261 LPE sing 274 n n C26 H262 LPE sing 275 n n C27 C28 LPE sing 276 n n C27 H271 LPE sing 277 n n C27 H272 LPE sing 278 n n C28 H281 LPE sing 279 n n C28 H282 LPE sing 280 n n C28 H283 LPE sing 281 n n # _atom_sites.entry_id 8XMO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 2001 2005 NAG NAG . G 5 NAG A 1 2002 2006 NAG NAG . H 6 LPE A 1 2003 2010 LPE LPE . I 6 LPE A 1 2004 2012 LPE LPE . J 7 PCW A 1 2005 2013 PCW PCW . K 6 LPE A 1 2006 2014 LPE LPE . L 6 LPE A 1 2007 2015 LPE LPE . M 7 PCW A 1 2008 2016 PCW PCW . N 7 PCW A 1 2009 2017 PCW PCW . O 7 PCW A 1 2010 2018 PCW PCW . P 6 LPE A 1 2011 2021 LPE LPE . Q 6 LPE A 1 2012 2023 LPE LPE . R 6 LPE A 1 2013 2032 LPE LPE . S 7 PCW A 1 2014 2035 PCW PCW . T 5 NAG B 1 301 301 NAG NAG . U 5 NAG B 1 302 302 NAG NAG . V 5 NAG B 1 303 303 NAG NAG . W 5 NAG B 1 304 304 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPE . . . L 6 128.046 152.386 119.036 1 40.92 ? C1 LPE 2007 A 1 HETATM 2 O O1 LPE . . . L 6 129.248 152.004 118.378 1 40.92 ? O1 LPE 2007 A 1 HETATM 3 C C2 LPE . . . L 6 127.281 153.238 118.045 1 40.92 ? C2 LPE 2007 A 1 HETATM 4 O O2H LPE . . . L 6 127.098 152.433 116.888 1 40.92 ? O2H LPE 2007 A 1 HETATM 5 C C3 LPE . . . L 6 125.935 153.68 118.608 1 40.92 ? C3 LPE 2007 A 1 HETATM 6 C C11 LPE . . . L 6 130.249 151.568 119.289 1 40.92 ? C11 LPE 2007 A 1 HETATM 7 C C12 LPE . . . L 6 131.451 151.084 118.497 1 40.92 ? C12 LPE 2007 A 1 HETATM 8 O O3 LPE . . . L 6 124.957 152.64 118.584 1 40.92 ? O3 LPE 2007 A 1 HETATM 9 P P LPE . . . L 6 123.409 153.037 118.793 1 40.92 ? P LPE 2007 A 1 HETATM 10 O O31 LPE . . . L 6 123.311 154.541 118.815 1 40.92 ? O31 LPE 2007 A 1 HETATM 11 O O32 LPE . . . L 6 122.851 152.241 119.936 1 40.92 ? O32 LPE 2007 A 1 HETATM 12 O O33 LPE . . . L 6 122.677 152.523 117.464 1 40.92 ? O33 LPE 2007 A 1 HETATM 13 C C31 LPE . . . L 6 121.331 152.921 117.215 1 40.92 ? C31 LPE 2007 A 1 HETATM 14 C C32 LPE . . . L 6 120.554 151.779 116.572 1 40.92 ? C32 LPE 2007 A 1 HETATM 15 N N LPE . . . L 6 119.934 150.925 117.595 1 40.92 ? N LPE 2007 A 1 HETATM 16 C C1N LPE . . . L 6 120.853 149.851 117.994 1 40.92 ? C1N LPE 2007 A 1 HETATM 17 C C2N LPE . . . L 6 119.592 151.726 118.778 1 40.92 ? C2N LPE 2007 A 1 HETATM 18 C C3N LPE . . . L 6 118.708 150.33 117.05 1 40.92 ? C3N LPE 2007 A 1 HETATM 19 C C13 LPE . . . L 6 132.21 152.231 117.845 1 40.92 ? C13 LPE 2007 A 1 HETATM 20 C C14 LPE . . . L 6 132.941 153.066 118.883 1 40.92 ? C14 LPE 2007 A 1 HETATM 21 C C15 LPE . . . L 6 134.119 153.819 118.279 1 40.92 ? C15 LPE 2007 A 1 HETATM 22 C C16 LPE . . . L 6 135.305 152.89 118.068 1 40.92 ? C16 LPE 2007 A 1 HETATM 23 C C17 LPE . . . L 6 136.501 153.611 117.455 1 40.92 ? C17 LPE 2007 A 1 HETATM 24 C C18 LPE . . . L 6 136.962 154.763 118.337 1 40.92 ? C18 LPE 2007 A 1 HETATM 25 C C19 LPE . . . L 6 138.349 155.274 117.957 1 40.92 ? C19 LPE 2007 A 1 HETATM 26 C C20 LPE . . . L 6 139.431 154.369 118.526 1 40.92 ? C20 LPE 2007 A 1 HETATM 27 C C21 LPE . . . L 6 140.801 155.038 118.551 1 40.92 ? C21 LPE 2007 A 1 HETATM 28 C C22 LPE . . . L 6 141.497 154.995 117.199 1 40.92 ? C22 LPE 2007 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 121 _model_server_stats.create_model_time_ms 157 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #