data_8XNI # _model_server_result.job_id oLJsar6hahiAaRoehYqfJg _model_server_result.datetime_utc '2024-12-28 06:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 8XNI # _exptl.entry_id 8XNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.429 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8XNI _cell.length_a 54.418 _cell.length_b 54.418 _cell.length_c 107.058 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 22 1_555 A SG CYS 160 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 48 A CYS 42 1_555 A SG CYS 64 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 132 A CYS 128 1_555 A SG CYS 233 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf4 A SG CYS 139 A CYS 136 1_555 A SG CYS 206 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 171 A CYS 168 1_555 A SG CYS 185 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 196 A CYS 191 1_555 A SG CYS 220 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A OE1 GLU 75 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 A O ASN 77 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A O VAL 80 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 A OE2 GLU 85 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'C15 H30 N5 O5 1' _chem_comp.formula_weight 360.429 _chem_comp.id E64 _chem_comp.mon_nstd_flag . _chem_comp.name N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 E64 doub 83 n n C1 O2 E64 sing 84 n n C1 C2 E64 sing 85 n n O2 HO2 E64 sing 86 n n C2 C3 E64 sing 87 n n C2 H21 E64 sing 88 n n C2 H22 E64 sing 89 n n C3 O3 E64 sing 90 n n C3 C4 E64 sing 91 n n C3 H3 E64 sing 92 n n O3 HO3 E64 sing 93 n n C4 O4 E64 doub 94 n n C4 N1 E64 sing 95 n n N1 C6 E64 sing 96 n n N1 HN1 E64 sing 97 n n C6 C7 E64 sing 98 n n C6 C11 E64 sing 99 n n C6 H6 E64 sing 100 n n C7 C8 E64 sing 101 n n C7 H71 E64 sing 102 n n C7 H72 E64 sing 103 n n C8 C9 E64 sing 104 n n C8 C10 E64 sing 105 n n C8 H8 E64 sing 106 n n C9 H91 E64 sing 107 n n C9 H92 E64 sing 108 n n C9 H93 E64 sing 109 n n C10 H101 E64 sing 110 n n C10 H102 E64 sing 111 n n C10 H103 E64 sing 112 n n C11 O5 E64 doub 113 n n C11 N2 E64 sing 114 n n N2 C12 E64 sing 115 n n N2 HN2 E64 sing 116 n n C12 C13 E64 sing 117 n n C12 H121 E64 sing 118 n n C12 H122 E64 sing 119 n n C13 C14 E64 sing 120 n n C13 H131 E64 sing 121 n n C13 H132 E64 sing 122 n n C14 C15 E64 sing 123 n n C14 H141 E64 sing 124 n n C14 H142 E64 sing 125 n n C15 N3 E64 sing 126 n n C15 H151 E64 sing 127 n n C15 H152 E64 sing 128 n n N3 C16 E64 sing 129 n n N3 HN3 E64 sing 130 n n C16 N4 E64 sing 131 n n C16 N5 E64 doub 132 n n N4 HN41 E64 sing 133 n n N4 HN42 E64 sing 134 n n N5 HN51 E64 sing 135 n n N5 HN52 E64 sing 136 n n # _atom_sites.entry_id 8XNI _atom_sites.fract_transf_matrix[1][1] 0.018376 _atom_sites.fract_transf_matrix[1][2] 0.01061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 CL A 1 302 2 CL CL . D 3 CL A 1 303 3 CL CL . E 3 CL A 1 304 4 CL CL . F 4 E64 A 1 305 301 E64 E64 . G 5 HOH A 1 401 114 HOH HOH . G 5 HOH A 2 402 113 HOH HOH . G 5 HOH A 3 403 62 HOH HOH . G 5 HOH A 4 404 133 HOH HOH . G 5 HOH A 5 405 154 HOH HOH . G 5 HOH A 6 406 18 HOH HOH . G 5 HOH A 7 407 34 HOH HOH . G 5 HOH A 8 408 96 HOH HOH . G 5 HOH A 9 409 109 HOH HOH . G 5 HOH A 10 410 9 HOH HOH . G 5 HOH A 11 411 78 HOH HOH . G 5 HOH A 12 412 29 HOH HOH . G 5 HOH A 13 413 120 HOH HOH . G 5 HOH A 14 414 152 HOH HOH . G 5 HOH A 15 415 22 HOH HOH . G 5 HOH A 16 416 151 HOH HOH . G 5 HOH A 17 417 47 HOH HOH . G 5 HOH A 18 418 136 HOH HOH . G 5 HOH A 19 419 65 HOH HOH . G 5 HOH A 20 420 61 HOH HOH . G 5 HOH A 21 421 8 HOH HOH . G 5 HOH A 22 422 146 HOH HOH . G 5 HOH A 23 423 10 HOH HOH . G 5 HOH A 24 424 132 HOH HOH . G 5 HOH A 25 425 139 HOH HOH . G 5 HOH A 26 426 23 HOH HOH . G 5 HOH A 27 427 27 HOH HOH . G 5 HOH A 28 428 77 HOH HOH . G 5 HOH A 29 429 30 HOH HOH . G 5 HOH A 30 430 76 HOH HOH . G 5 HOH A 31 431 86 HOH HOH . G 5 HOH A 32 432 39 HOH HOH . G 5 HOH A 33 433 45 HOH HOH . G 5 HOH A 34 434 15 HOH HOH . G 5 HOH A 35 435 17 HOH HOH . G 5 HOH A 36 436 95 HOH HOH . G 5 HOH A 37 437 1 HOH HOH . G 5 HOH A 38 438 111 HOH HOH . G 5 HOH A 39 439 69 HOH HOH . G 5 HOH A 40 440 50 HOH HOH . G 5 HOH A 41 441 14 HOH HOH . G 5 HOH A 42 442 43 HOH HOH . G 5 HOH A 43 443 81 HOH HOH . G 5 HOH A 44 444 88 HOH HOH . G 5 HOH A 45 445 64 HOH HOH . G 5 HOH A 46 446 94 HOH HOH . G 5 HOH A 47 447 54 HOH HOH . G 5 HOH A 48 448 74 HOH HOH . G 5 HOH A 49 449 108 HOH HOH . G 5 HOH A 50 450 16 HOH HOH . G 5 HOH A 51 451 33 HOH HOH . G 5 HOH A 52 452 3 HOH HOH . G 5 HOH A 53 453 42 HOH HOH . G 5 HOH A 54 454 127 HOH HOH . G 5 HOH A 55 455 87 HOH HOH . G 5 HOH A 56 456 75 HOH HOH . G 5 HOH A 57 457 59 HOH HOH . G 5 HOH A 58 458 90 HOH HOH . G 5 HOH A 59 459 60 HOH HOH . G 5 HOH A 60 460 147 HOH HOH . G 5 HOH A 61 461 80 HOH HOH . G 5 HOH A 62 462 123 HOH HOH . G 5 HOH A 63 463 84 HOH HOH . G 5 HOH A 64 464 107 HOH HOH . G 5 HOH A 65 465 53 HOH HOH . G 5 HOH A 66 466 117 HOH HOH . G 5 HOH A 67 467 19 HOH HOH . G 5 HOH A 68 468 130 HOH HOH . G 5 HOH A 69 469 25 HOH HOH . G 5 HOH A 70 470 142 HOH HOH . G 5 HOH A 71 471 105 HOH HOH . G 5 HOH A 72 472 116 HOH HOH . G 5 HOH A 73 473 56 HOH HOH . G 5 HOH A 74 474 82 HOH HOH . G 5 HOH A 75 475 101 HOH HOH . G 5 HOH A 76 476 157 HOH HOH . G 5 HOH A 77 477 57 HOH HOH . G 5 HOH A 78 478 71 HOH HOH . G 5 HOH A 79 479 58 HOH HOH . G 5 HOH A 80 480 24 HOH HOH . G 5 HOH A 81 481 144 HOH HOH . G 5 HOH A 82 482 20 HOH HOH . G 5 HOH A 83 483 85 HOH HOH . G 5 HOH A 84 484 2 HOH HOH . G 5 HOH A 85 485 11 HOH HOH . G 5 HOH A 86 486 73 HOH HOH . G 5 HOH A 87 487 149 HOH HOH . G 5 HOH A 88 488 6 HOH HOH . G 5 HOH A 89 489 28 HOH HOH . G 5 HOH A 90 490 104 HOH HOH . G 5 HOH A 91 491 91 HOH HOH . G 5 HOH A 92 492 103 HOH HOH . G 5 HOH A 93 493 35 HOH HOH . G 5 HOH A 94 494 153 HOH HOH . G 5 HOH A 95 495 106 HOH HOH . G 5 HOH A 96 496 21 HOH HOH . G 5 HOH A 97 497 44 HOH HOH . G 5 HOH A 98 498 67 HOH HOH . G 5 HOH A 99 499 51 HOH HOH . G 5 HOH A 100 500 38 HOH HOH . G 5 HOH A 101 501 36 HOH HOH . G 5 HOH A 102 502 134 HOH HOH . G 5 HOH A 103 503 41 HOH HOH . G 5 HOH A 104 504 31 HOH HOH . G 5 HOH A 105 505 66 HOH HOH . G 5 HOH A 106 506 99 HOH HOH . G 5 HOH A 107 507 112 HOH HOH . G 5 HOH A 108 508 140 HOH HOH . G 5 HOH A 109 509 160 HOH HOH . G 5 HOH A 110 510 98 HOH HOH . G 5 HOH A 111 511 63 HOH HOH . G 5 HOH A 112 512 161 HOH HOH . G 5 HOH A 113 513 49 HOH HOH . G 5 HOH A 114 514 37 HOH HOH . G 5 HOH A 115 515 70 HOH HOH . G 5 HOH A 116 516 55 HOH HOH . G 5 HOH A 117 517 4 HOH HOH . G 5 HOH A 118 518 32 HOH HOH . G 5 HOH A 119 519 72 HOH HOH . G 5 HOH A 120 520 46 HOH HOH . G 5 HOH A 121 521 126 HOH HOH . G 5 HOH A 122 522 138 HOH HOH . G 5 HOH A 123 523 148 HOH HOH . G 5 HOH A 124 524 137 HOH HOH . G 5 HOH A 125 525 162 HOH HOH . G 5 HOH A 126 526 145 HOH HOH . G 5 HOH A 127 527 52 HOH HOH . G 5 HOH A 128 528 115 HOH HOH . G 5 HOH A 129 529 102 HOH HOH . G 5 HOH A 130 530 124 HOH HOH . G 5 HOH A 131 531 159 HOH HOH . G 5 HOH A 132 532 135 HOH HOH . G 5 HOH A 133 533 150 HOH HOH . G 5 HOH A 134 534 93 HOH HOH . G 5 HOH A 135 535 118 HOH HOH . G 5 HOH A 136 536 110 HOH HOH . G 5 HOH A 137 537 156 HOH HOH . G 5 HOH A 138 538 92 HOH HOH . G 5 HOH A 139 539 131 HOH HOH . G 5 HOH A 140 540 158 HOH HOH . G 5 HOH A 141 541 125 HOH HOH . G 5 HOH A 142 542 128 HOH HOH . G 5 HOH A 143 543 121 HOH HOH . G 5 HOH A 144 544 119 HOH HOH . G 5 HOH A 145 545 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E64 . . . F 4 -9.229 24.816 2.578 1 17 ? C1 E64 305 A 1 HETATM 2 O O1 E64 . . . F 4 -7.986 24.781 2.361 1 15.2 ? O1 E64 305 A 1 HETATM 3 O O2 E64 . . . F 4 -9.729 24.986 3.721 1 17.16 ? O2 E64 305 A 1 HETATM 4 C C2 E64 . . . F 4 -10.198 24.654 1.414 1 17.59 ? C2 E64 305 A 1 HETATM 5 C C3 E64 . . . F 4 -9.531 24.645 0.033 1 18.64 ? C3 E64 305 A 1 HETATM 6 O O3 E64 . . . F 4 -9.359 26.006 -0.291 1 19.23 ? O3 E64 305 A 1 HETATM 7 C C4 E64 . . . F 4 -10.318 23.907 -1.062 1 20.08 ? C4 E64 305 A 1 HETATM 8 O O4 E64 . . . F 4 -10.443 22.676 -1.015 1 18.15 ? O4 E64 305 A 1 HETATM 9 N N1 E64 . . . F 4 -10.787 24.641 -2.079 1 20.87 ? N1 E64 305 A 1 HETATM 10 C C6 E64 . . . F 4 -11.452 24.039 -3.224 1 23.14 ? C6 E64 305 A 1 HETATM 11 C C7 E64 . . . F 4 -12.041 25.092 -4.167 1 24.61 ? C7 E64 305 A 1 HETATM 12 C C8 E64 . . . F 4 -13.351 25.731 -3.706 1 25.71 ? C8 E64 305 A 1 HETATM 13 C C9 E64 . . . F 4 -13.133 26.663 -2.516 1 27.19 ? C9 E64 305 A 1 HETATM 14 C C10 E64 . . . F 4 -14.021 26.49 -4.842 1 26.47 ? C10 E64 305 A 1 HETATM 15 C C11 E64 . . . F 4 -10.488 23.115 -3.972 1 23.39 ? C11 E64 305 A 1 HETATM 16 O O5 E64 . . . F 4 -9.372 23.528 -4.294 1 25.06 ? O5 E64 305 A 1 HETATM 17 N N2 E64 . . . F 4 -10.901 21.857 -4.182 1 22.98 ? N2 E64 305 A 1 HETATM 18 C C12 E64 . . . F 4 -10.273 20.866 -5.056 1 21.9 ? C12 E64 305 A 1 HETATM 19 C C13 E64 . . . F 4 -9.329 19.888 -4.371 1 20.87 ? C13 E64 305 A 1 HETATM 20 C C14 E64 . . . F 4 -9.604 19.658 -2.902 1 20.02 ? C14 E64 305 A 1 HETATM 21 C C15 E64 . . . F 4 -8.742 18.557 -2.318 1 19.76 ? C15 E64 305 A 1 HETATM 22 N N3 E64 . . . F 4 -8.381 18.757 -0.917 1 19.53 ? N3 E64 305 A 1 HETATM 23 C C16 E64 . . . F 4 -8.132 17.776 -0.058 1 19.57 ? C16 E64 305 A 1 HETATM 24 N N4 E64 . . . F 4 -8.421 16.534 -0.394 1 19.66 ? N4 E64 305 A 1 HETATM 25 N N5 E64 . . . F 4 -7.594 18.029 1.127 1 20.16 ? N5 E64 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 25 #