data_8XNL # _model_server_result.job_id dS7bcZyLsC2KtBpA-2AKYw _model_server_result.datetime_utc '2024-12-22 08:45:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":202}' # _entry.id 8XNL # _exptl.entry_id 8XNL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 29 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 29 GA N N ? 29 IA N N ? 29 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 Q SG CYS 78 X CYS 78 1_555 Q SG CYS 110 X CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 Y FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 B SG CYS 100 B CYS 100 1_555 Y FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 B O CYS 194 B CYS 194 1_555 Y FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc4 B SG CYS 194 B CYS 194 1_555 Y FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 E SG CYS 139 E CYS 139 1_555 Z FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 E SG CYS 175 E CYS 175 1_555 Z FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 E SG CYS 179 E CYS 179 1_555 Z FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc8 F SG CYS 385 F CYS 385 1_555 BA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc9 G O PHE 63 G PHE 63 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 G SG CYS 64 G CYS 64 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc11 G SG CYS 92 G CYS 92 1_555 EA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc12 G NE2 HIS 124 G HIS 124 1_555 CA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc13 G SG CYS 128 G CYS 128 1_555 CA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc14 G SG CYS 137 G CYS 137 1_555 CA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc15 G SG CYS 179 G CYS 179 1_555 DA FE3 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc16 G SG CYS 182 G CYS 182 1_555 DA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc17 I SG CYS 116 I CYS 116 1_555 KA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc18 I SG CYS 119 I CYS 119 1_555 KA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc19 I SG CYS 158 I CYS 158 1_555 JA FE3 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc20 L SG CYS 79 R CYS 79 1_555 MA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc21 L SG CYS 104 R CYS 104 1_555 MA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc22 L SG CYS 107 R CYS 107 1_555 MA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 848 n n P O14 PC1 doub 849 n n P O13 PC1 sing 850 n n P O11 PC1 sing 851 n n O13 C11 PC1 sing 852 n n C11 C12 PC1 sing 853 n n C11 H111 PC1 sing 854 n n C11 H112 PC1 sing 855 n n C12 N PC1 sing 856 n n C12 H121 PC1 sing 857 n n C12 H122 PC1 sing 858 n n N C13 PC1 sing 859 n n N C14 PC1 sing 860 n n N C15 PC1 sing 861 n n C13 H131 PC1 sing 862 n n C13 H132 PC1 sing 863 n n C13 H133 PC1 sing 864 n n C14 H141 PC1 sing 865 n n C14 H142 PC1 sing 866 n n C14 H143 PC1 sing 867 n n C15 H151 PC1 sing 868 n n C15 H152 PC1 sing 869 n n C15 H153 PC1 sing 870 n n O11 C1 PC1 sing 871 n n C1 C2 PC1 sing 872 n n C1 H11 PC1 sing 873 n n C1 H12 PC1 sing 874 n n C2 O21 PC1 sing 875 n n C2 C3 PC1 sing 876 n n C2 H2 PC1 sing 877 n n O21 C21 PC1 sing 878 n n C21 O22 PC1 doub 879 n n C21 C22 PC1 sing 880 n n C22 C23 PC1 sing 881 n n C22 H221 PC1 sing 882 n n C22 H222 PC1 sing 883 n n C23 C24 PC1 sing 884 n n C23 H231 PC1 sing 885 n n C23 H232 PC1 sing 886 n n C24 C25 PC1 sing 887 n n C24 H241 PC1 sing 888 n n C24 H242 PC1 sing 889 n n C25 C26 PC1 sing 890 n n C25 H251 PC1 sing 891 n n C25 H252 PC1 sing 892 n n C26 C27 PC1 sing 893 n n C26 H261 PC1 sing 894 n n C26 H262 PC1 sing 895 n n C27 C28 PC1 sing 896 n n C27 H271 PC1 sing 897 n n C27 H272 PC1 sing 898 n n C28 C29 PC1 sing 899 n n C28 H281 PC1 sing 900 n n C28 H282 PC1 sing 901 n n C29 C2A PC1 sing 902 n n C29 H291 PC1 sing 903 n n C29 H292 PC1 sing 904 n n C2A C2B PC1 sing 905 n n C2A H2A1 PC1 sing 906 n n C2A H2A2 PC1 sing 907 n n C2B C2C PC1 sing 908 n n C2B H2B1 PC1 sing 909 n n C2B H2B2 PC1 sing 910 n n C2C C2D PC1 sing 911 n n C2C H2C1 PC1 sing 912 n n C2C H2C2 PC1 sing 913 n n C2D C2E PC1 sing 914 n n C2D H2D1 PC1 sing 915 n n C2D H2D2 PC1 sing 916 n n C2E C2F PC1 sing 917 n n C2E H2E1 PC1 sing 918 n n C2E H2E2 PC1 sing 919 n n C2F C2G PC1 sing 920 n n C2F H2F1 PC1 sing 921 n n C2F H2F2 PC1 sing 922 n n C2G C2H PC1 sing 923 n n C2G H2G1 PC1 sing 924 n n C2G H2G2 PC1 sing 925 n n C2H C2I PC1 sing 926 n n C2H H2H1 PC1 sing 927 n n C2H H2H2 PC1 sing 928 n n C2I H2I1 PC1 sing 929 n n C2I H2I2 PC1 sing 930 n n C2I H2I3 PC1 sing 931 n n C3 O31 PC1 sing 932 n n C3 H31 PC1 sing 933 n n C3 H32 PC1 sing 934 n n O31 C31 PC1 sing 935 n n C31 O32 PC1 doub 936 n n C31 C32 PC1 sing 937 n n C32 C33 PC1 sing 938 n n C32 H321 PC1 sing 939 n n C32 H322 PC1 sing 940 n n C33 C34 PC1 sing 941 n n C33 H331 PC1 sing 942 n n C33 H332 PC1 sing 943 n n C34 C35 PC1 sing 944 n n C34 H341 PC1 sing 945 n n C34 H342 PC1 sing 946 n n C35 C36 PC1 sing 947 n n C35 H351 PC1 sing 948 n n C35 H352 PC1 sing 949 n n C36 C37 PC1 sing 950 n n C36 H361 PC1 sing 951 n n C36 H362 PC1 sing 952 n n C37 C38 PC1 sing 953 n n C37 H371 PC1 sing 954 n n C37 H372 PC1 sing 955 n n C38 C39 PC1 sing 956 n n C38 H381 PC1 sing 957 n n C38 H382 PC1 sing 958 n n C39 C3A PC1 sing 959 n n C39 H391 PC1 sing 960 n n C39 H392 PC1 sing 961 n n C3A C3B PC1 sing 962 n n C3A H3A1 PC1 sing 963 n n C3A H3A2 PC1 sing 964 n n C3B C3C PC1 sing 965 n n C3B H3B1 PC1 sing 966 n n C3B H3B2 PC1 sing 967 n n C3C C3D PC1 sing 968 n n C3C H3C1 PC1 sing 969 n n C3C H3C2 PC1 sing 970 n n C3D C3E PC1 sing 971 n n C3D H3D1 PC1 sing 972 n n C3D H3D2 PC1 sing 973 n n C3E C3F PC1 sing 974 n n C3E H3E1 PC1 sing 975 n n C3E H3E2 PC1 sing 976 n n C3F C3G PC1 sing 977 n n C3F H3F1 PC1 sing 978 n n C3F H3F2 PC1 sing 979 n n C3G C3H PC1 sing 980 n n C3G H3G1 PC1 sing 981 n n C3G H3G2 PC1 sing 982 n n C3H C3I PC1 sing 983 n n C3H H3H1 PC1 sing 984 n n C3H H3H2 PC1 sing 985 n n C3I H3I1 PC1 sing 986 n n C3I H3I2 PC1 sing 987 n n C3I H3I3 PC1 sing 988 n n # _atom_sites.entry_id 8XNL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 3PE A 1 401 401 3PE 3PE . Y 25 SF4 B 1 301 236 SF4 SF4 . Z 26 FES E 1 301 332 FES FES . AA 27 FMN F 1 501 521 FMN FMN . BA 25 SF4 F 1 502 522 SF4 SF4 . CA 25 SF4 G 1 801 824 SF4 SF4 . DA 25 SF4 G 1 802 825 SF4 SF4 . EA 26 FES G 1 803 826 FES FES . FA 28 UQ9 H 1 401 400 UQ9 UQ9 . GA 29 PC1 H 1 402 402 PC1 PC1 . HA 24 3PE H 1 403 403 3PE 3PE . IA 29 PC1 I 1 301 404 PC1 PC1 . JA 25 SF4 I 1 302 235 SF4 SF4 . KA 25 SF4 I 1 303 236 SF4 SF4 . LA 30 NDP P 1 401 536 NDP NDP . MA 31 ZN R 1 201 221 ZN ZN . NA 32 EHZ W 1 201 201 EHZ EHZ . OA 24 3PE b 1 201 201 3PE 3PE . PA 33 CDL q 1 201 405 CDL CDL . QA 29 PC1 q 1 202 406 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . QA 29 273.19 179.484 186.492 1 37.86 -1 O12 PC1 202 q 1 HETATM 2 P P PC1 . . . QA 29 274.482 179.737 185.757 1 37.86 0 P PC1 202 q 1 HETATM 3 O O14 PC1 . . . QA 29 275.265 178.588 185.177 1 37.86 0 O14 PC1 202 q 1 HETATM 4 O O13 PC1 . . . QA 29 275.452 180.577 186.723 1 37.86 0 O13 PC1 202 q 1 HETATM 5 C C11 PC1 . . . QA 29 276.246 181.639 186.207 1 37.86 0 C11 PC1 202 q 1 HETATM 6 C C12 PC1 . . . QA 29 277.674 181.47 186.707 1 37.86 0 C12 PC1 202 q 1 HETATM 7 N N PC1 . . . QA 29 278.46 182.664 186.37 1 37.86 0 N PC1 202 q 1 HETATM 8 C C13 PC1 . . . QA 29 278.244 183.688 187.397 1 37.86 0 C13 PC1 202 q 1 HETATM 9 C C14 PC1 . . . QA 29 279.884 182.305 186.325 1 37.86 0 C14 PC1 202 q 1 HETATM 10 C C15 PC1 . . . QA 29 278.045 183.182 185.064 1 37.86 0 C15 PC1 202 q 1 HETATM 11 O O11 PC1 . . . QA 29 274.179 180.768 184.569 1 37.86 0 O11 PC1 202 q 1 HETATM 12 C C1 PC1 . . . QA 29 274.254 180.324 183.218 1 37.86 0 C1 PC1 202 q 1 HETATM 13 C C2 PC1 . . . QA 29 273.003 179.519 182.903 1 37.86 0 C2 PC1 202 q 1 HETATM 14 O O21 PC1 . . . QA 29 273.19 178.158 183.28 1 37.86 0 O21 PC1 202 q 1 HETATM 15 C C21 PC1 . . . QA 29 271.952 177.537 183.715 1 37.86 0 C21 PC1 202 q 1 HETATM 16 O O22 PC1 . . . QA 29 271.009 178.246 184.018 1 37.86 0 O22 PC1 202 q 1 HETATM 17 C C22 PC1 . . . QA 29 271.845 176.035 183.799 1 37.86 0 C22 PC1 202 q 1 HETATM 18 C C23 PC1 . . . QA 29 270.386 175.605 183.692 1 37.86 0 C23 PC1 202 q 1 HETATM 19 C C24 PC1 . . . QA 29 269.815 175.981 182.33 1 37.86 0 C24 PC1 202 q 1 HETATM 20 C C25 PC1 . . . QA 29 268.547 175.196 182.02 1 37.86 0 C25 PC1 202 q 1 HETATM 21 C C26 PC1 . . . QA 29 268.039 175.544 180.629 1 37.86 0 C26 PC1 202 q 1 HETATM 22 C C27 PC1 . . . QA 29 267.141 174.45 180.065 1 37.86 0 C27 PC1 202 q 1 HETATM 23 C C28 PC1 . . . QA 29 265.877 174.286 180.894 1 37.86 0 C28 PC1 202 q 1 HETATM 24 C C3 PC1 . . . QA 29 272.731 179.583 181.408 1 37.86 0 C3 PC1 202 q 1 HETATM 25 O O31 PC1 . . . QA 29 271.385 179.193 181.165 1 37.86 0 O31 PC1 202 q 1 HETATM 26 C C31 PC1 . . . QA 29 270.858 179.366 179.827 1 37.86 0 C31 PC1 202 q 1 HETATM 27 O O32 PC1 . . . QA 29 271.629 179.288 178.889 1 37.86 0 O32 PC1 202 q 1 HETATM 28 C C32 PC1 . . . QA 29 269.398 179.651 179.585 1 37.86 0 C32 PC1 202 q 1 HETATM 29 C C33 PC1 . . . QA 29 269.202 179.721 178.077 1 37.86 0 C33 PC1 202 q 1 HETATM 30 C C34 PC1 . . . QA 29 267.856 180.311 177.697 1 37.86 0 C34 PC1 202 q 1 HETATM 31 C C35 PC1 . . . QA 29 266.73 179.668 178.49 1 37.86 0 C35 PC1 202 q 1 HETATM 32 C C36 PC1 . . . QA 29 265.396 180.086 177.895 1 37.86 0 C36 PC1 202 q 1 HETATM 33 C C37 PC1 . . . QA 29 265.305 181.597 177.749 1 37.86 0 C37 PC1 202 q 1 HETATM 34 C C38 PC1 . . . QA 29 264.101 181.968 176.895 1 37.86 0 C38 PC1 202 q 1 HETATM 35 C C39 PC1 . . . QA 29 264.264 181.414 175.485 1 37.86 0 C39 PC1 202 q 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 143 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 35 #