data_8XNS # _model_server_result.job_id xe4Mi1dcYSts-qWoW0WM5Q _model_server_result.datetime_utc '2024-12-22 08:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":401}' # _entry.id 8XNS # _exptl.entry_id 8XNS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.226 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ubiquinone-9 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 Y N N ? 25 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 X FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 B O CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc3 B SG CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 E SG CYS 134 E CYS 134 1_555 AA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc5 E SG CYS 175 E CYS 175 1_555 AA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc6 F SG CYS 385 F CYS 385 1_555 CA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 G O PHE 63 G PHE 63 1_555 FA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 G SG CYS 75 G CYS 75 1_555 FA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 G NE2 HIS 124 G HIS 124 1_555 DA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc10 G SG CYS 128 G CYS 128 1_555 DA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 G SG CYS 137 G CYS 137 1_555 DA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc12 G SG CYS 182 G CYS 182 1_555 EA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc13 I SG CYS 116 I CYS 116 1_555 JA FE1 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc14 I SG CYS 119 I CYS 119 1_555 JA FE2 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc15 I SG CYS 158 I CYS 158 1_555 IA FE3 SF4 . I SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 L SG CYS 79 R CYS 79 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc17 L NE2 HIS 88 R HIS 88 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc18 L SG CYS 104 R CYS 104 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc19 L SG CYS 107 R CYS 107 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C54 H82 O4' _chem_comp.formula_weight 795.226 _chem_comp.id UQ9 _chem_comp.mon_nstd_flag . _chem_comp.name Ubiquinone-9 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-dimethoxy-5-methyl-6-[(2E,6E,10E,14Z,18E,22E,26E,30Z)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18 ,22,26,30,34-nonaen-1-yl]cyclohexa-2,5-diene-1,4-dione' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C51 C49 UQ9 sing 867 n n C51 H51 UQ9 sing 868 n n C51 H51A UQ9 sing 869 n n C51 H51B UQ9 sing 870 n n C49 C50 UQ9 sing 871 n n C49 C48 UQ9 doub 872 n n C50 H50 UQ9 sing 873 n n C50 H50A UQ9 sing 874 n n C50 H50B UQ9 sing 875 n n C48 C47 UQ9 sing 876 n n C48 H48 UQ9 sing 877 n n C47 C46 UQ9 sing 878 n n C47 H47 UQ9 sing 879 n n C47 H47A UQ9 sing 880 n n C46 C44 UQ9 sing 881 n n C46 H46 UQ9 sing 882 n n C46 H46A UQ9 sing 883 n n C44 C43 UQ9 doub 884 z n C44 C45 UQ9 sing 885 n n C45 H45 UQ9 sing 886 n n C45 H45A UQ9 sing 887 n n C45 H45B UQ9 sing 888 n n C42 C43 UQ9 sing 889 n n C43 H43 UQ9 sing 890 n n C42 C41 UQ9 sing 891 n n C42 H42 UQ9 sing 892 n n C42 H42A UQ9 sing 893 n n C41 C39 UQ9 sing 894 n n C41 H41 UQ9 sing 895 n n C41 H41A UQ9 sing 896 n n C40 C39 UQ9 sing 897 e n C39 C38 UQ9 doub 898 n n C40 H40 UQ9 sing 899 n n C40 H40A UQ9 sing 900 n n C40 H40B UQ9 sing 901 n n C38 C37 UQ9 sing 902 n n C38 H38 UQ9 sing 903 n n C37 C36 UQ9 sing 904 n n C37 H37 UQ9 sing 905 n n C37 H37A UQ9 sing 906 n n C34 C36 UQ9 sing 907 n n C36 H36 UQ9 sing 908 n n C36 H36A UQ9 sing 909 n n C33 C34 UQ9 doub 910 n n C34 C35 UQ9 sing 911 n n C35 H35 UQ9 sing 912 n n C35 H35A UQ9 sing 913 n n C35 H35B UQ9 sing 914 e n C32 C33 UQ9 sing 915 n n C33 H33 UQ9 sing 916 n n C32 C31 UQ9 sing 917 n n C32 H32 UQ9 sing 918 n n C32 H32A UQ9 sing 919 n n C29 C31 UQ9 sing 920 n n C31 H31 UQ9 sing 921 n n C31 H31A UQ9 sing 922 n n C30 C29 UQ9 sing 923 e n C29 C28 UQ9 doub 924 n n C30 H30 UQ9 sing 925 n n C30 H30A UQ9 sing 926 n n C30 H30B UQ9 sing 927 n n C27 C28 UQ9 sing 928 n n C28 H28 UQ9 sing 929 n n C27 C26 UQ9 sing 930 n n C27 H27 UQ9 sing 931 n n C27 H27A UQ9 sing 932 n n C24 C26 UQ9 sing 933 n n C26 H26 UQ9 sing 934 n n C26 H26A UQ9 sing 935 n n C23 C24 UQ9 doub 936 n n C24 C25 UQ9 sing 937 n n C25 H25 UQ9 sing 938 n n C25 H25A UQ9 sing 939 n n C25 H25B UQ9 sing 940 z n C22 C23 UQ9 sing 941 n n C23 H23 UQ9 sing 942 n n C21 C22 UQ9 sing 943 n n C22 H22 UQ9 sing 944 n n C22 H22A UQ9 sing 945 n n C19 C21 UQ9 sing 946 n n C21 H21 UQ9 sing 947 n n C21 H21A UQ9 sing 948 n n C20 C19 UQ9 sing 949 e n C19 C18 UQ9 doub 950 n n C20 H20 UQ9 sing 951 n n C20 H20A UQ9 sing 952 n n C20 H20B UQ9 sing 953 n n C17 C18 UQ9 sing 954 n n C18 H18 UQ9 sing 955 n n C17 C16 UQ9 sing 956 n n C17 H17 UQ9 sing 957 n n C17 H17A UQ9 sing 958 n n C14 C16 UQ9 sing 959 n n C16 H16 UQ9 sing 960 n n C16 H16A UQ9 sing 961 n n C13 C14 UQ9 doub 962 n n C14 C15 UQ9 sing 963 n n C15 H15 UQ9 sing 964 n n C15 H15A UQ9 sing 965 n n C15 H15B UQ9 sing 966 e n C12 C13 UQ9 sing 967 n n C13 H13 UQ9 sing 968 n n C11 C12 UQ9 sing 969 n n C12 H12 UQ9 sing 970 n n C12 H12A UQ9 sing 971 n n C11 C9 UQ9 sing 972 n n C11 H11 UQ9 sing 973 n n C11 H11A UQ9 sing 974 n n C10 C9 UQ9 sing 975 e n C9 C8 UQ9 doub 976 n n C10 H10 UQ9 sing 977 n n C10 H10A UQ9 sing 978 n n C10 H10B UQ9 sing 979 n n C8 C7 UQ9 sing 980 n n C8 H8 UQ9 sing 981 n n C7 C6 UQ9 sing 982 n n C7 H7 UQ9 sing 983 n n C7 H7A UQ9 sing 984 n n C5 C6 UQ9 sing 985 n n C6 C1 UQ9 doub 986 n n C1 C2 UQ9 sing 987 n n C1 C1M UQ9 sing 988 n n C1M H1M UQ9 sing 989 n n C1M H1MA UQ9 sing 990 n n C1M H1MB UQ9 sing 991 n n C3 C2 UQ9 sing 992 n n C2 O2 UQ9 doub 993 n n C4 C3 UQ9 doub 994 n n C3 O3 UQ9 sing 995 n n O3 C3M UQ9 sing 996 n n C3M H3M UQ9 sing 997 n n C3M H3MA UQ9 sing 998 n n C3M H3MB UQ9 sing 999 n n O4 C4 UQ9 sing 1000 n n C5 C4 UQ9 sing 1001 n n O4 C4M UQ9 sing 1002 n n C4M H4M UQ9 sing 1003 n n C4M H4MA UQ9 sing 1004 n n C4M H4MB UQ9 sing 1005 n n O5 C5 UQ9 doub 1006 n n # _atom_sites.entry_id 8XNS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 SF4 B 1 301 236 SF4 SF4 . Y 25 UQ9 B 1 302 399 UQ9 UQ9 . Z 26 PC1 B 1 303 406 PC1 PC1 . AA 27 FES E 1 301 332 FES FES . BA 28 FMN F 1 501 521 FMN FMN . CA 24 SF4 F 1 502 522 SF4 SF4 . DA 24 SF4 G 1 801 824 SF4 SF4 . EA 24 SF4 G 1 802 825 SF4 SF4 . FA 27 FES G 1 803 826 FES FES . GA 25 UQ9 H 1 401 400 UQ9 UQ9 . HA 29 3PE H 1 402 403 3PE 3PE . IA 24 SF4 I 1 301 235 SF4 SF4 . JA 24 SF4 I 1 302 236 SF4 SF4 . KA 30 NDP P 1 401 536 NDP NDP . LA 31 ZN R 1 201 221 ZN ZN . MA 32 EHZ W 1 201 201 EHZ EHZ . NA 29 3PE Z 1 401 401 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 UQ9 . . . GA 25 260.241 182.346 170.184 1 31.4 0 C28 UQ9 401 H 1 HETATM 2 C C27 UQ9 . . . GA 25 260.104 182.93 168.811 1 31.4 0 C27 UQ9 401 H 1 HETATM 3 C C26 UQ9 . . . GA 25 260.606 184.357 168.725 1 31.4 0 C26 UQ9 401 H 1 HETATM 4 C C24 UQ9 . . . GA 25 259.912 185.287 169.681 1 31.4 0 C24 UQ9 401 H 1 HETATM 5 C C25 UQ9 . . . GA 25 258.427 185.379 169.508 1 31.4 0 C25 UQ9 401 H 1 HETATM 6 C C23 UQ9 . . . GA 25 260.59 185.965 170.602 1 31.4 0 C23 UQ9 401 H 1 HETATM 7 C C22 UQ9 . . . GA 25 260.055 186.633 171.831 1 31.4 0 C22 UQ9 401 H 1 HETATM 8 C C21 UQ9 . . . GA 25 261.111 187.358 172.641 1 31.4 0 C21 UQ9 401 H 1 HETATM 9 C C19 UQ9 . . . GA 25 260.561 187.892 173.934 1 31.4 0 C19 UQ9 401 H 1 HETATM 10 C C20 UQ9 . . . GA 25 259.128 187.548 174.198 1 31.4 0 C20 UQ9 401 H 1 HETATM 11 C C18 UQ9 . . . GA 25 261.317 188.597 174.77 1 31.4 0 C18 UQ9 401 H 1 HETATM 12 C C17 UQ9 . . . GA 25 260.999 189.904 175.433 1 31.4 0 C17 UQ9 401 H 1 HETATM 13 C C16 UQ9 . . . GA 25 260.838 189.751 176.93 1 31.4 0 C16 UQ9 401 H 1 HETATM 14 C C14 UQ9 . . . GA 25 261.269 190.937 177.744 1 31.4 0 C14 UQ9 401 H 1 HETATM 15 C C15 UQ9 . . . GA 25 260.582 192.225 177.409 1 31.4 0 C15 UQ9 401 H 1 HETATM 16 C C13 UQ9 . . . GA 25 262.195 190.812 178.69 1 31.4 0 C13 UQ9 401 H 1 HETATM 17 C C12 UQ9 . . . GA 25 262.34 191.588 179.965 1 31.4 0 C12 UQ9 401 H 1 HETATM 18 C C11 UQ9 . . . GA 25 262.725 193.042 179.791 1 31.4 0 C11 UQ9 401 H 1 HETATM 19 C C9 UQ9 . . . GA 25 262.508 193.834 181.049 1 31.4 0 C9 UQ9 401 H 1 HETATM 20 C C10 UQ9 . . . GA 25 261.083 193.931 181.501 1 31.4 0 C10 UQ9 401 H 1 HETATM 21 C C8 UQ9 . . . GA 25 263.509 194.368 181.728 1 31.4 0 C8 UQ9 401 H 1 HETATM 22 C C7 UQ9 . . . GA 25 263.433 195.504 182.712 1 31.4 0 C7 UQ9 401 H 1 HETATM 23 C C6 UQ9 . . . GA 25 264.482 196.585 182.557 1 31.4 0 C6 UQ9 401 H 1 HETATM 24 C C1 UQ9 . . . GA 25 264.985 197.001 181.346 1 31.4 0 C1 UQ9 401 H 1 HETATM 25 C C1M UQ9 . . . GA 25 265.166 196.118 180.153 1 31.4 0 C1M UQ9 401 H 1 HETATM 26 C C2 UQ9 . . . GA 25 265.399 198.392 181.227 1 31.4 0 C2 UQ9 401 H 1 HETATM 27 O O2 UQ9 . . . GA 25 265.424 198.959 180.145 1 31.4 0 O2 UQ9 401 H 1 HETATM 28 C C3 UQ9 . . . GA 25 265.786 199.098 182.382 1 31.4 0 C3 UQ9 401 H 1 HETATM 29 O O3 UQ9 . . . GA 25 266.381 200.307 182.201 1 31.4 0 O3 UQ9 401 H 1 HETATM 30 C C3M UQ9 . . . GA 25 267.789 200.261 181.944 1 31.4 0 C3M UQ9 401 H 1 HETATM 31 C C4 UQ9 . . . GA 25 265.535 198.523 183.643 1 31.4 0 C4 UQ9 401 H 1 HETATM 32 O O4 UQ9 . . . GA 25 265.825 199.127 184.823 1 31.4 0 O4 UQ9 401 H 1 HETATM 33 C C4M UQ9 . . . GA 25 267.217 199.193 185.141 1 31.4 0 C4M UQ9 401 H 1 HETATM 34 C C5 UQ9 . . . GA 25 264.942 197.242 183.725 1 31.4 0 C5 UQ9 401 H 1 HETATM 35 O O5 UQ9 . . . GA 25 264.822 196.725 184.827 1 31.4 0 O5 UQ9 401 H 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 140 _model_server_stats.query_time_ms 769 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 35 #