data_8XNS # _model_server_result.job_id wERoEDNn7I3C2pHd19XuFg _model_server_result.datetime_utc '2025-06-23 01:00:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":401}' # _entry.id 8XNS # _exptl.entry_id 8XNS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 30 _struct_asym.id KA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 X FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 B O CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc3 B SG CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 E SG CYS 134 E CYS 134 1_555 AA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc5 E SG CYS 175 E CYS 175 1_555 AA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc6 F SG CYS 385 F CYS 385 1_555 CA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 G O PHE 63 G PHE 63 1_555 FA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 G SG CYS 75 G CYS 75 1_555 FA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 G NE2 HIS 124 G HIS 124 1_555 DA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc10 G SG CYS 128 G CYS 128 1_555 DA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 G SG CYS 137 G CYS 137 1_555 DA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc12 G SG CYS 182 G CYS 182 1_555 EA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc13 I SG CYS 116 I CYS 116 1_555 JA FE1 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc14 I SG CYS 119 I CYS 119 1_555 JA FE2 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc15 I SG CYS 158 I CYS 158 1_555 IA FE3 SF4 . I SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 L SG CYS 79 R CYS 79 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc17 L NE2 HIS 88 R HIS 88 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc18 L SG CYS 104 R CYS 104 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc19 L SG CYS 107 R CYS 107 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 511 n n PA O2A NDP sing 512 n n PA O5B NDP sing 513 n n PA O3 NDP sing 514 n n O2A HOA2 NDP sing 515 n n O5B C5B NDP sing 516 n n C5B C4B NDP sing 517 n n C5B H51A NDP sing 518 n n C5B H52A NDP sing 519 n n C4B O4B NDP sing 520 n n C4B C3B NDP sing 521 n n C4B H4B NDP sing 522 n n O4B C1B NDP sing 523 n n C3B O3B NDP sing 524 n n C3B C2B NDP sing 525 n n C3B H3B NDP sing 526 n n O3B HO3A NDP sing 527 n n C2B O2B NDP sing 528 n n C2B C1B NDP sing 529 n n C2B H2B NDP sing 530 n n O2B P2B NDP sing 531 n n C1B N9A NDP sing 532 n n C1B H1B NDP sing 533 n n N9A C8A NDP sing 534 n y N9A C4A NDP sing 535 n y C8A N7A NDP doub 536 n y C8A H8A NDP sing 537 n n N7A C5A NDP sing 538 n y C5A C6A NDP sing 539 n y C5A C4A NDP doub 540 n y C6A N6A NDP sing 541 n n C6A N1A NDP doub 542 n y N6A H61A NDP sing 543 n n N6A H62A NDP sing 544 n n N1A C2A NDP sing 545 n y C2A N3A NDP doub 546 n y C2A H2A NDP sing 547 n n N3A C4A NDP sing 548 n y O3 PN NDP sing 549 n n PN O1N NDP doub 550 n n PN O2N NDP sing 551 n n PN O5D NDP sing 552 n n O2N H21N NDP sing 553 n n O5D C5D NDP sing 554 n n C5D C4D NDP sing 555 n n C5D H51N NDP sing 556 n n C5D H52N NDP sing 557 n n C4D O4D NDP sing 558 n n C4D C3D NDP sing 559 n n C4D H4D NDP sing 560 n n O4D C1D NDP sing 561 n n C3D O3D NDP sing 562 n n C3D C2D NDP sing 563 n n C3D H3D NDP sing 564 n n O3D HO3N NDP sing 565 n n C2D O2D NDP sing 566 n n C2D C1D NDP sing 567 n n C2D H2D NDP sing 568 n n O2D HO2N NDP sing 569 n n C1D N1N NDP sing 570 n n C1D H1D NDP sing 571 n n N1N C2N NDP sing 572 n n N1N C6N NDP sing 573 n n C2N C3N NDP doub 574 n n C2N H2N NDP sing 575 n n C3N C7N NDP sing 576 n n C3N C4N NDP sing 577 n n C7N O7N NDP doub 578 n n C7N N7N NDP sing 579 n n N7N H71N NDP sing 580 n n N7N H72N NDP sing 581 n n C4N C5N NDP sing 582 n n C4N H41N NDP sing 583 n n C4N H42N NDP sing 584 n n C5N C6N NDP doub 585 n n C5N H5N NDP sing 586 n n C6N H6N NDP sing 587 n n P2B O1X NDP doub 588 n n P2B O2X NDP sing 589 n n P2B O3X NDP sing 590 n n O2X HOP2 NDP sing 591 n n O3X HOP3 NDP sing 592 n n # _atom_sites.entry_id 8XNS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 SF4 B 1 301 236 SF4 SF4 . Y 25 UQ9 B 1 302 399 UQ9 UQ9 . Z 26 PC1 B 1 303 406 PC1 PC1 . AA 27 FES E 1 301 332 FES FES . BA 28 FMN F 1 501 521 FMN FMN . CA 24 SF4 F 1 502 522 SF4 SF4 . DA 24 SF4 G 1 801 824 SF4 SF4 . EA 24 SF4 G 1 802 825 SF4 SF4 . FA 27 FES G 1 803 826 FES FES . GA 25 UQ9 H 1 401 400 UQ9 UQ9 . HA 29 3PE H 1 402 403 3PE 3PE . IA 24 SF4 I 1 301 235 SF4 SF4 . JA 24 SF4 I 1 302 236 SF4 SF4 . KA 30 NDP P 1 401 536 NDP NDP . LA 31 ZN R 1 201 221 ZN ZN . MA 32 EHZ W 1 201 201 EHZ EHZ . NA 29 3PE Z 1 401 401 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . KA 30 246.575 167.797 202.858 1 42.05 0 PA NDP 401 P 1 HETATM 2 O O1A NDP . . . KA 30 245.886 167.487 201.554 1 42.05 -1 O1A NDP 401 P 1 HETATM 3 O O2A NDP . . . KA 30 246.938 169.217 203.202 1 42.05 0 O2A NDP 401 P 1 HETATM 4 O O5B NDP . . . KA 30 247.899 166.895 202.946 1 42.05 0 O5B NDP 401 P 1 HETATM 5 C C5B NDP . . . KA 30 248.555 166.773 204.201 1 42.05 0 C5B NDP 401 P 1 HETATM 6 C C4B NDP . . . KA 30 250.044 166.571 203.991 1 42.05 0 C4B NDP 401 P 1 HETATM 7 O O4B NDP . . . KA 30 250.326 165.232 203.583 1 42.05 0 O4B NDP 401 P 1 HETATM 8 C C3B NDP . . . KA 30 250.581 167.481 202.905 1 42.05 0 C3B NDP 401 P 1 HETATM 9 O O3B NDP . . . KA 30 251.467 168.442 203.475 1 42.05 0 O3B NDP 401 P 1 HETATM 10 C C2B NDP . . . KA 30 251.305 166.578 201.934 1 42.05 0 C2B NDP 401 P 1 HETATM 11 O O2B NDP . . . KA 30 252.588 167.096 201.617 1 42.05 0 O2B NDP 401 P 1 HETATM 12 C C1B NDP . . . KA 30 251.41 165.252 202.659 1 42.05 0 C1B NDP 401 P 1 HETATM 13 N N9A NDP . . . KA 30 251.295 164.126 201.709 1 42.05 0 N9A NDP 401 P 1 HETATM 14 C C8A NDP . . . KA 30 250.257 163.877 200.898 1 42.05 0 C8A NDP 401 P 1 HETATM 15 N N7A NDP . . . KA 30 250.479 162.764 200.155 1 42.05 0 N7A NDP 401 P 1 HETATM 16 C C5A NDP . . . KA 30 251.685 162.289 200.495 1 42.05 0 C5A NDP 401 P 1 HETATM 17 C C6A NDP . . . KA 30 252.529 161.147 200.095 1 42.05 0 C6A NDP 401 P 1 HETATM 18 N N6A NDP . . . KA 30 252.112 160.266 199.156 1 42.05 0 N6A NDP 401 P 1 HETATM 19 N N1A NDP . . . KA 30 253.728 161.01 200.696 1 42.05 0 N1A NDP 401 P 1 HETATM 20 C C2A NDP . . . KA 30 254.151 161.875 201.63 1 42.05 0 C2A NDP 401 P 1 HETATM 21 N N3A NDP . . . KA 30 253.437 162.933 202.038 1 42.05 0 N3A NDP 401 P 1 HETATM 22 C C4A NDP . . . KA 30 252.219 163.19 201.519 1 42.05 0 C4A NDP 401 P 1 HETATM 23 O O3 NDP . . . KA 30 245.693 167.198 204.058 1 42.05 0 O3 NDP 401 P 1 HETATM 24 P PN NDP . . . KA 30 245.174 168.155 205.237 1 42.05 0 PN NDP 401 P 1 HETATM 25 O O1N NDP . . . KA 30 246.362 168.818 205.879 1 42.05 -1 O1N NDP 401 P 1 HETATM 26 O O2N NDP . . . KA 30 244.048 168.999 204.697 1 42.05 0 O2N NDP 401 P 1 HETATM 27 O O5D NDP . . . KA 30 244.564 167.103 206.281 1 42.05 0 O5D NDP 401 P 1 HETATM 28 C C5D NDP . . . KA 30 245.43 166.437 207.195 1 42.05 0 C5D NDP 401 P 1 HETATM 29 C C4D NDP . . . KA 30 244.883 165.041 207.444 1 42.05 0 C4D NDP 401 P 1 HETATM 30 O O4D NDP . . . KA 30 243.642 165.112 208.14 1 42.05 0 O4D NDP 401 P 1 HETATM 31 C C3D NDP . . . KA 30 244.63 164.322 206.139 1 42.05 0 C3D NDP 401 P 1 HETATM 32 O O3D NDP . . . KA 30 245.414 163.132 206.108 1 42.05 0 O3D NDP 401 P 1 HETATM 33 C C2D NDP . . . KA 30 243.156 163.997 206.114 1 42.05 0 C2D NDP 401 P 1 HETATM 34 O O2D NDP . . . KA 30 242.939 162.619 205.82 1 42.05 0 O2D NDP 401 P 1 HETATM 35 C C1D NDP . . . KA 30 242.644 164.324 207.5 1 42.05 0 C1D NDP 401 P 1 HETATM 36 N N1N NDP . . . KA 30 241.41 165.096 207.419 1 42.05 0 N1N NDP 401 P 1 HETATM 37 C C2N NDP . . . KA 30 241.416 166.245 206.745 1 42.05 0 C2N NDP 401 P 1 HETATM 38 C C3N NDP . . . KA 30 240.282 167.03 206.638 1 42.05 0 C3N NDP 401 P 1 HETATM 39 C C7N NDP . . . KA 30 240.351 168.306 205.862 1 42.05 0 C7N NDP 401 P 1 HETATM 40 O O7N NDP . . . KA 30 241.294 168.498 205.115 1 42.05 0 O7N NDP 401 P 1 HETATM 41 N N7N NDP . . . KA 30 239.377 169.2 206.01 1 42.05 0 N7N NDP 401 P 1 HETATM 42 C C4N NDP . . . KA 30 238.982 166.622 207.279 1 42.05 0 C4N NDP 401 P 1 HETATM 43 C C5N NDP . . . KA 30 239.114 165.355 207.984 1 42.05 0 C5N NDP 401 P 1 HETATM 44 C C6N NDP . . . KA 30 240.31 164.652 208.025 1 42.05 0 C6N NDP 401 P 1 HETATM 45 P P2B NDP . . . KA 30 252.979 167.484 200.107 1 42.05 0 P2B NDP 401 P 1 HETATM 46 O O1X NDP . . . KA 30 251.761 168.206 199.599 1 42.05 0 O1X NDP 401 P 1 HETATM 47 O O2X NDP . . . KA 30 253.241 166.154 199.447 1 42.05 -1 O2X NDP 401 P 1 HETATM 48 O O3X NDP . . . KA 30 254.2 168.355 200.261 1 42.05 0 O3X NDP 401 P 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #