data_8XNT # _model_server_result.job_id 0mDbMAmB8JXJA-IQWmzk_g _model_server_result.datetime_utc '2025-01-03 01:45:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":302}' # _entry.id 8XNT # _exptl.entry_id 8XNT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 25 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 X FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 B SG CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc3 E SG CYS 134 E CYS 134 1_555 Z FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc4 E SG CYS 175 E CYS 175 1_555 Z FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc5 F SG CYS 385 F CYS 385 1_555 BA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc6 G O PHE 63 G PHE 63 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 G SG CYS 75 G CYS 75 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 G NE2 HIS 124 G HIS 124 1_555 CA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 G SG CYS 128 G CYS 128 1_555 CA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc10 G SG CYS 137 G CYS 137 1_555 CA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 G SG CYS 182 G CYS 182 1_555 DA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc12 I SG CYS 116 I CYS 116 1_555 GA FE1 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc13 I SG CYS 119 I CYS 119 1_555 GA FE2 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc14 I SG CYS 158 I CYS 158 1_555 FA FE3 SF4 . I SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc15 L SG CYS 79 R CYS 79 1_555 IA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc16 L NE2 HIS 88 R HIS 88 1_555 IA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc17 L SG CYS 104 R CYS 104 1_555 IA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc18 L SG CYS 107 R CYS 107 1_555 IA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 593 n n P O14 PC1 doub 594 n n P O13 PC1 sing 595 n n P O11 PC1 sing 596 n n O13 C11 PC1 sing 597 n n C11 C12 PC1 sing 598 n n C11 H111 PC1 sing 599 n n C11 H112 PC1 sing 600 n n C12 N PC1 sing 601 n n C12 H121 PC1 sing 602 n n C12 H122 PC1 sing 603 n n N C13 PC1 sing 604 n n N C14 PC1 sing 605 n n N C15 PC1 sing 606 n n C13 H131 PC1 sing 607 n n C13 H132 PC1 sing 608 n n C13 H133 PC1 sing 609 n n C14 H141 PC1 sing 610 n n C14 H142 PC1 sing 611 n n C14 H143 PC1 sing 612 n n C15 H151 PC1 sing 613 n n C15 H152 PC1 sing 614 n n C15 H153 PC1 sing 615 n n O11 C1 PC1 sing 616 n n C1 C2 PC1 sing 617 n n C1 H11 PC1 sing 618 n n C1 H12 PC1 sing 619 n n C2 O21 PC1 sing 620 n n C2 C3 PC1 sing 621 n n C2 H2 PC1 sing 622 n n O21 C21 PC1 sing 623 n n C21 O22 PC1 doub 624 n n C21 C22 PC1 sing 625 n n C22 C23 PC1 sing 626 n n C22 H221 PC1 sing 627 n n C22 H222 PC1 sing 628 n n C23 C24 PC1 sing 629 n n C23 H231 PC1 sing 630 n n C23 H232 PC1 sing 631 n n C24 C25 PC1 sing 632 n n C24 H241 PC1 sing 633 n n C24 H242 PC1 sing 634 n n C25 C26 PC1 sing 635 n n C25 H251 PC1 sing 636 n n C25 H252 PC1 sing 637 n n C26 C27 PC1 sing 638 n n C26 H261 PC1 sing 639 n n C26 H262 PC1 sing 640 n n C27 C28 PC1 sing 641 n n C27 H271 PC1 sing 642 n n C27 H272 PC1 sing 643 n n C28 C29 PC1 sing 644 n n C28 H281 PC1 sing 645 n n C28 H282 PC1 sing 646 n n C29 C2A PC1 sing 647 n n C29 H291 PC1 sing 648 n n C29 H292 PC1 sing 649 n n C2A C2B PC1 sing 650 n n C2A H2A1 PC1 sing 651 n n C2A H2A2 PC1 sing 652 n n C2B C2C PC1 sing 653 n n C2B H2B1 PC1 sing 654 n n C2B H2B2 PC1 sing 655 n n C2C C2D PC1 sing 656 n n C2C H2C1 PC1 sing 657 n n C2C H2C2 PC1 sing 658 n n C2D C2E PC1 sing 659 n n C2D H2D1 PC1 sing 660 n n C2D H2D2 PC1 sing 661 n n C2E C2F PC1 sing 662 n n C2E H2E1 PC1 sing 663 n n C2E H2E2 PC1 sing 664 n n C2F C2G PC1 sing 665 n n C2F H2F1 PC1 sing 666 n n C2F H2F2 PC1 sing 667 n n C2G C2H PC1 sing 668 n n C2G H2G1 PC1 sing 669 n n C2G H2G2 PC1 sing 670 n n C2H C2I PC1 sing 671 n n C2H H2H1 PC1 sing 672 n n C2H H2H2 PC1 sing 673 n n C2I H2I1 PC1 sing 674 n n C2I H2I2 PC1 sing 675 n n C2I H2I3 PC1 sing 676 n n C3 O31 PC1 sing 677 n n C3 H31 PC1 sing 678 n n C3 H32 PC1 sing 679 n n O31 C31 PC1 sing 680 n n C31 O32 PC1 doub 681 n n C31 C32 PC1 sing 682 n n C32 C33 PC1 sing 683 n n C32 H321 PC1 sing 684 n n C32 H322 PC1 sing 685 n n C33 C34 PC1 sing 686 n n C33 H331 PC1 sing 687 n n C33 H332 PC1 sing 688 n n C34 C35 PC1 sing 689 n n C34 H341 PC1 sing 690 n n C34 H342 PC1 sing 691 n n C35 C36 PC1 sing 692 n n C35 H351 PC1 sing 693 n n C35 H352 PC1 sing 694 n n C36 C37 PC1 sing 695 n n C36 H361 PC1 sing 696 n n C36 H362 PC1 sing 697 n n C37 C38 PC1 sing 698 n n C37 H371 PC1 sing 699 n n C37 H372 PC1 sing 700 n n C38 C39 PC1 sing 701 n n C38 H381 PC1 sing 702 n n C38 H382 PC1 sing 703 n n C39 C3A PC1 sing 704 n n C39 H391 PC1 sing 705 n n C39 H392 PC1 sing 706 n n C3A C3B PC1 sing 707 n n C3A H3A1 PC1 sing 708 n n C3A H3A2 PC1 sing 709 n n C3B C3C PC1 sing 710 n n C3B H3B1 PC1 sing 711 n n C3B H3B2 PC1 sing 712 n n C3C C3D PC1 sing 713 n n C3C H3C1 PC1 sing 714 n n C3C H3C2 PC1 sing 715 n n C3D C3E PC1 sing 716 n n C3D H3D1 PC1 sing 717 n n C3D H3D2 PC1 sing 718 n n C3E C3F PC1 sing 719 n n C3E H3E1 PC1 sing 720 n n C3E H3E2 PC1 sing 721 n n C3F C3G PC1 sing 722 n n C3F H3F1 PC1 sing 723 n n C3F H3F2 PC1 sing 724 n n C3G C3H PC1 sing 725 n n C3G H3G1 PC1 sing 726 n n C3G H3G2 PC1 sing 727 n n C3H C3I PC1 sing 728 n n C3H H3H1 PC1 sing 729 n n C3H H3H2 PC1 sing 730 n n C3I H3I1 PC1 sing 731 n n C3I H3I2 PC1 sing 732 n n C3I H3I3 PC1 sing 733 n n # _atom_sites.entry_id 8XNT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 SF4 B 1 301 236 SF4 SF4 . Y 25 PC1 B 1 302 406 PC1 PC1 . Z 26 FES E 1 301 332 FES FES . AA 27 FMN F 1 501 521 FMN FMN . BA 24 SF4 F 1 502 522 SF4 SF4 . CA 24 SF4 G 1 801 824 SF4 SF4 . DA 24 SF4 G 1 802 825 SF4 SF4 . EA 26 FES G 1 803 826 FES FES . FA 24 SF4 I 1 301 235 SF4 SF4 . GA 24 SF4 I 1 302 236 SF4 SF4 . HA 28 NDP P 1 401 536 NDP NDP . IA 29 ZN R 1 201 221 ZN ZN . JA 30 EHZ W 1 201 201 EHZ EHZ . KA 31 3PE b 1 201 201 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . Y 25 271.278 175.741 184.925 1 37.86 -1 O12 PC1 302 B 1 HETATM 2 P P PC1 . . . Y 25 271.881 176.184 183.616 1 37.86 0 P PC1 302 B 1 HETATM 3 O O14 PC1 . . . Y 25 271.994 175.211 182.469 1 37.86 0 O14 PC1 302 B 1 HETATM 4 O O13 PC1 . . . Y 25 273.346 176.77 183.917 1 37.86 0 O13 PC1 302 B 1 HETATM 5 C C11 PC1 . . . Y 25 274.065 177.499 182.925 1 37.86 0 C11 PC1 302 B 1 HETATM 6 C C12 PC1 . . . Y 25 275.276 178.173 183.556 1 37.86 0 C12 PC1 302 B 1 HETATM 7 N N PC1 . . . Y 25 274.85 179.181 184.534 1 37.86 0 N PC1 302 B 1 HETATM 8 C C13 PC1 . . . Y 25 274.677 178.569 185.857 1 37.86 0 C13 PC1 302 B 1 HETATM 9 C C14 PC1 . . . Y 25 275.878 180.222 184.625 1 37.86 0 C14 PC1 302 B 1 HETATM 10 C C15 PC1 . . . Y 25 273.584 179.783 184.103 1 37.86 0 C15 PC1 302 B 1 HETATM 11 O O11 PC1 . . . Y 25 271.08 177.478 183.103 1 37.86 0 O11 PC1 302 B 1 HETATM 12 C C1 PC1 . . . Y 25 271.023 177.799 181.716 1 37.86 0 C1 PC1 302 B 1 HETATM 13 C C2 PC1 . . . Y 25 269.571 177.95 181.295 1 37.86 0 C2 PC1 302 B 1 HETATM 14 O O21 PC1 . . . Y 25 268.984 176.667 181.106 1 37.86 0 O21 PC1 302 B 1 HETATM 15 C C21 PC1 . . . Y 25 268.787 175.93 182.344 1 37.86 0 C21 PC1 302 B 1 HETATM 16 O O22 PC1 . . . Y 25 268.503 176.532 183.362 1 37.86 0 O22 PC1 302 B 1 HETATM 17 C C22 PC1 . . . Y 25 268.926 174.426 182.364 1 37.86 0 C22 PC1 302 B 1 HETATM 18 C C23 PC1 . . . Y 25 267.651 173.768 181.847 1 37.86 0 C23 PC1 302 B 1 HETATM 19 C C24 PC1 . . . Y 25 267.283 174.266 180.457 1 37.86 0 C24 PC1 302 B 1 HETATM 20 C C25 PC1 . . . Y 25 265.981 173.628 179.995 1 37.86 0 C25 PC1 302 B 1 HETATM 21 C C26 PC1 . . . Y 25 265.477 174.283 178.716 1 37.86 0 C26 PC1 302 B 1 HETATM 22 C C27 PC1 . . . Y 25 264.257 173.545 178.185 1 37.86 0 C27 PC1 302 B 1 HETATM 23 C C28 PC1 . . . Y 25 263.174 173.45 179.253 1 37.86 0 C28 PC1 302 B 1 HETATM 24 C C3 PC1 . . . Y 25 269.517 178.71 179.98 1 37.86 0 C3 PC1 302 B 1 HETATM 25 O O31 PC1 . . . Y 25 268.155 178.928 179.623 1 37.86 0 O31 PC1 302 B 1 HETATM 26 C C31 PC1 . . . Y 25 267.834 179.545 178.35 1 37.86 0 C31 PC1 302 B 1 HETATM 27 O O32 PC1 . . . Y 25 268.593 179.38 177.414 1 37.86 0 O32 PC1 302 B 1 HETATM 28 C C32 PC1 . . . Y 25 266.592 180.383 178.182 1 37.86 0 C32 PC1 302 B 1 HETATM 29 C C33 PC1 . . . Y 25 266.59 180.956 176.774 1 37.86 0 C33 PC1 302 B 1 HETATM 30 C C34 PC1 . . . Y 25 265.324 181.752 176.494 1 37.86 0 C34 PC1 302 B 1 HETATM 31 C C35 PC1 . . . Y 25 264.088 180.898 176.745 1 37.86 0 C35 PC1 302 B 1 HETATM 32 C C36 PC1 . . . Y 25 262.818 181.66 176.398 1 37.86 0 C36 PC1 302 B 1 HETATM 33 C C37 PC1 . . . Y 25 262.735 182.968 177.171 1 37.86 0 C37 PC1 302 B 1 HETATM 34 C C38 PC1 . . . Y 25 261.36 183.603 177.012 1 37.86 0 C38 PC1 302 B 1 HETATM 35 C C39 PC1 . . . Y 25 261.063 183.895 175.548 1 37.86 0 C39 PC1 302 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 155 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 35 #