data_8XNU
#
_model_server_result.job_id            fSFn3Bb4Z7uaE1n9w0vgDA 
_model_server_result.datetime_utc      '2024-12-22 09:14:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xnu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"LA","auth_seq_id":201}' 
#
_entry.id    8XNU 
#
_exptl.entry_id    8XNU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              584.703 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    23-meric 
_pdbx_struct_assembly.oligomeric_count      23 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      31 
_struct_asym.id                             LA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 Y FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 B SG CYS 194 B CYS 194 1_555 Y FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc3 E SG CYS 134 E CYS 134 1_555 Z FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc4 E SG CYS 175 E CYS 175 1_555 Z FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc5 F SG CYS 385 F CYS 385 1_555 BA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc6 G O PHE 63 G PHE 63 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 G SG CYS 75 G CYS 75 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc8 G NE2 HIS 124 G HIS 124 1_555 CA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 G SG CYS 128 G CYS 128 1_555 CA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc10 G SG CYS 137 G CYS 137 1_555 CA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc11 G SG CYS 182 G CYS 182 1_555 DA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc12 I SG CYS 116 I CYS 116 1_555 IA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc13 I SG CYS 119 I CYS 119 1_555 IA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc14 I SG CYS 158 I CYS 158 1_555 HA FE3 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc15 L SG CYS 79 R CYS 79 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc16 L NE2 HIS 88 R HIS 88 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc17 L SG CYS 104 R CYS 104 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc18 L SG CYS 107 R CYS 107 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
#
_chem_comp.formula           'C25 H49 N2 O9 P S' 
_chem_comp.formula_weight    584.703 
_chem_comp.id                EHZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O7 P1 EHZ sing 215 n n 
O9 P1 EHZ doub 216 n n 
P1 O6 EHZ sing 217 n n 
O6 C20 EHZ sing 218 n n 
C20 C17 EHZ sing 219 n n 
O5 C16 EHZ sing 220 n n 
C19 C17 EHZ sing 221 n n 
C17 C16 EHZ sing 222 n n 
C17 C18 EHZ sing 223 n n 
C16 C15 EHZ sing 224 n n 
C15 O4 EHZ doub 225 n n 
C15 N2 EHZ sing 226 n n 
N2 C14 EHZ sing 227 n n 
C13 C14 EHZ sing 228 n n 
C13 C12 EHZ sing 229 n n 
N1 C12 EHZ sing 230 n n 
N1 C11 EHZ sing 231 n n 
C12 O3 EHZ doub 232 n n 
C11 C10 EHZ sing 233 n n 
O2 C9 EHZ doub 234 n n 
C10 S1 EHZ sing 235 n n 
C7 C6 EHZ sing 236 n n 
C7 C8 EHZ sing 237 n n 
C7 O1 EHZ sing 238 n n 
C9 S1 EHZ sing 239 n n 
C9 C8 EHZ sing 240 n n 
C6 C5 EHZ sing 241 n n 
C22 C21 EHZ sing 242 n n 
C1 C21 EHZ sing 243 n n 
C1 C2 EHZ sing 244 n n 
C3 C2 EHZ sing 245 n n 
C3 C4 EHZ sing 246 n n 
C5 C4 EHZ sing 247 n n 
O1 H1 EHZ sing 248 n n 
C1 H2 EHZ sing 249 n n 
C1 H3 EHZ sing 250 n n 
C2 H4 EHZ sing 251 n n 
C2 H5 EHZ sing 252 n n 
C3 H6 EHZ sing 253 n n 
C3 H7 EHZ sing 254 n n 
C4 H8 EHZ sing 255 n n 
C4 H9 EHZ sing 256 n n 
C5 H10 EHZ sing 257 n n 
C5 H11 EHZ sing 258 n n 
C6 H12 EHZ sing 259 n n 
C6 H13 EHZ sing 260 n n 
C7 H14 EHZ sing 261 n n 
C8 H15 EHZ sing 262 n n 
C8 H16 EHZ sing 263 n n 
C10 H17 EHZ sing 264 n n 
C10 H18 EHZ sing 265 n n 
C11 H19 EHZ sing 266 n n 
C11 H20 EHZ sing 267 n n 
C13 H21 EHZ sing 268 n n 
C13 H22 EHZ sing 269 n n 
C14 H23 EHZ sing 270 n n 
C14 H24 EHZ sing 271 n n 
C16 H25 EHZ sing 272 n n 
C18 H26 EHZ sing 273 n n 
C18 H27 EHZ sing 274 n n 
C18 H28 EHZ sing 275 n n 
C19 H29 EHZ sing 276 n n 
C19 H30 EHZ sing 277 n n 
C19 H31 EHZ sing 278 n n 
C20 H32 EHZ sing 279 n n 
C20 H33 EHZ sing 280 n n 
C21 H34 EHZ sing 281 n n 
C21 H35 EHZ sing 282 n n 
C22 H36 EHZ sing 283 n n 
C22 H37 EHZ sing 284 n n 
N1 H39 EHZ sing 285 n n 
N2 H40 EHZ sing 286 n n 
O5 H41 EHZ sing 287 n n 
O7 H42 EHZ sing 288 n n 
P1 OP3 EHZ sing 289 n n 
C22 C23 EHZ sing 290 n n 
C23 C24 EHZ sing 291 n n 
C24 C25 EHZ sing 292 n n 
OP3 H44 EHZ sing 293 n n 
C23 H45 EHZ sing 294 n n 
C23 H46 EHZ sing 295 n n 
C24 H47 EHZ sing 296 n n 
C24 H48 EHZ sing 297 n n 
C25 H49 EHZ sing 298 n n 
C25 H50 EHZ sing 299 n n 
C25 H51 EHZ sing 300 n n 
#
_atom_sites.entry_id                     8XNU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
X 24 3PE A 1 401 401 3PE 3PE . 
Y 25 SF4 B 1 301 236 SF4 SF4 . 
Z 26 FES E 1 301 332 FES FES . 
AA 27 FMN F 1 501 521 FMN FMN . 
BA 25 SF4 F 1 502 522 SF4 SF4 . 
CA 25 SF4 G 1 801 824 SF4 SF4 . 
DA 25 SF4 G 1 802 825 SF4 SF4 . 
EA 26 FES G 1 803 826 FES FES . 
FA 28 UQ9 H 1 400 400 UQ9 UQ9 . 
GA 24 3PE I 1 301 403 3PE 3PE . 
HA 25 SF4 I 1 302 235 SF4 SF4 . 
IA 25 SF4 I 1 303 236 SF4 SF4 . 
JA 29 NDP P 1 401 536 NDP NDP . 
KA 30 ZN R 1 201 221 ZN ZN . 
LA 31 EHZ W 1 201 201 EHZ EHZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 EHZ . . . LA 31 246.197 206.124 221.588 1 60.02 0 O1 EHZ 201 W 1 
HETATM 2 C C2 EHZ . . . LA 31 242.543 201.445 219.367 1 60.02 0 C2 EHZ 201 W 1 
HETATM 3 C C3 EHZ . . . LA 31 243.122 202.85 219.314 1 60.02 0 C3 EHZ 201 W 1 
HETATM 4 C C4 EHZ . . . LA 31 244.409 202.884 220.125 1 60.02 0 C4 EHZ 201 W 1 
HETATM 5 O O2 EHZ . . . LA 31 244.936 206.037 225.146 1 60.02 0 O2 EHZ 201 W 1 
HETATM 6 C C5 EHZ . . . LA 31 244.53 204.24 220.809 1 60.02 0 C5 EHZ 201 W 1 
HETATM 7 C C6 EHZ . . . LA 31 245.163 204.072 222.186 1 60.02 0 C6 EHZ 201 W 1 
HETATM 8 C C7 EHZ . . . LA 31 245.624 205.441 222.663 1 60.02 0 C7 EHZ 201 W 1 
HETATM 9 C C8 EHZ . . . LA 31 246.658 205.288 223.767 1 60.02 0 C8 EHZ 201 W 1 
HETATM 10 C C10 EHZ . . . LA 31 246.301 206.842 227.823 1 60.02 0 C10 EHZ 201 W 1 
HETATM 11 C C11 EHZ . . . LA 31 246.991 207.842 228.747 1 60.02 0 C11 EHZ 201 W 1 
HETATM 12 C C12 EHZ . . . LA 31 246.239 209.488 230.463 1 60.02 0 C12 EHZ 201 W 1 
HETATM 13 C C13 EHZ . . . LA 31 245.241 210.491 231.018 1 60.02 0 C13 EHZ 201 W 1 
HETATM 14 C C14 EHZ . . . LA 31 245.378 210.475 232.536 1 60.02 0 C14 EHZ 201 W 1 
HETATM 15 C C15 EHZ . . . LA 31 244.452 211.622 234.565 1 60.02 0 C15 EHZ 201 W 1 
HETATM 16 C C16 EHZ . . . LA 31 243.484 212.624 235.182 1 60.02 0 C16 EHZ 201 W 1 
HETATM 17 C C17 EHZ . . . LA 31 242.662 212.034 236.327 1 60.02 0 C17 EHZ 201 W 1 
HETATM 18 C C18 EHZ . . . LA 31 243.461 212.082 237.624 1 60.02 0 C18 EHZ 201 W 1 
HETATM 19 C C19 EHZ . . . LA 31 241.405 212.874 236.509 1 60.02 0 C19 EHZ 201 W 1 
HETATM 20 C C20 EHZ . . . LA 31 242.245 210.591 236.04 1 60.02 0 C20 EHZ 201 W 1 
HETATM 21 C C9 EHZ . . . LA 31 246.105 205.976 225.006 1 60.02 0 C9 EHZ 201 W 1 
HETATM 22 N N1 EHZ . . . LA 31 246.001 208.793 229.217 1 60.02 0 N1 EHZ 201 W 1 
HETATM 23 N N2 EHZ . . . LA 31 244.465 211.428 233.129 1 60.02 0 N2 EHZ 201 W 1 
HETATM 24 O O3 EHZ . . . LA 31 247.224 209.256 231.069 1 60.02 0 O3 EHZ 201 W 1 
HETATM 25 O O4 EHZ . . . LA 31 245.2 211.018 235.248 1 60.02 0 O4 EHZ 201 W 1 
HETATM 26 O O5 EHZ . . . LA 31 244.216 213.722 235.636 1 60.02 0 O5 EHZ 201 W 1 
HETATM 27 O O6 EHZ . . . LA 31 241.165 210.257 236.863 1 60.02 0 O6 EHZ 201 W 1 
HETATM 28 O O7 EHZ . . . LA 31 240.32 208.948 234.689 1 60.02 0 O7 EHZ 201 W 1 
HETATM 29 O O9 EHZ . . . LA 31 238.652 209.867 236.422 1 60.02 -1 O9 EHZ 201 W 1 
HETATM 30 P P1 EHZ . . . LA 31 239.979 209.288 236.259 1 60.02 0 P1 EHZ 201 W 1 
HETATM 31 S S1 EHZ . . . LA 31 247.204 206.704 226.254 1 60.02 0 S1 EHZ 201 W 1 
HETATM 32 O OP3 EHZ . . . LA 31 239.812 208.083 237.061 1 60.02 0 OP3 EHZ 201 W 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          29 
_model_server_stats.element_count           32 
#