data_8XNU # _model_server_result.job_id rbq4w4fQDbStxjhY7iOxLw _model_server_result.datetime_utc '2024-12-22 09:10:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":401}' # _entry.id 8XNU # _exptl.entry_id 8XNU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 29 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 29 _struct_asym.id JA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 Y FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 B SG CYS 194 B CYS 194 1_555 Y FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc3 E SG CYS 134 E CYS 134 1_555 Z FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc4 E SG CYS 175 E CYS 175 1_555 Z FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc5 F SG CYS 385 F CYS 385 1_555 BA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc6 G O PHE 63 G PHE 63 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 G SG CYS 75 G CYS 75 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 G NE2 HIS 124 G HIS 124 1_555 CA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 G SG CYS 128 G CYS 128 1_555 CA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc10 G SG CYS 137 G CYS 137 1_555 CA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 G SG CYS 182 G CYS 182 1_555 DA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc12 I SG CYS 116 I CYS 116 1_555 IA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc13 I SG CYS 119 I CYS 119 1_555 IA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc14 I SG CYS 158 I CYS 158 1_555 HA FE3 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc15 L SG CYS 79 R CYS 79 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc16 L NE2 HIS 88 R HIS 88 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc17 L SG CYS 104 R CYS 104 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc18 L SG CYS 107 R CYS 107 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 511 n n PA O2A NDP sing 512 n n PA O5B NDP sing 513 n n PA O3 NDP sing 514 n n O2A HOA2 NDP sing 515 n n O5B C5B NDP sing 516 n n C5B C4B NDP sing 517 n n C5B H51A NDP sing 518 n n C5B H52A NDP sing 519 n n C4B O4B NDP sing 520 n n C4B C3B NDP sing 521 n n C4B H4B NDP sing 522 n n O4B C1B NDP sing 523 n n C3B O3B NDP sing 524 n n C3B C2B NDP sing 525 n n C3B H3B NDP sing 526 n n O3B HO3A NDP sing 527 n n C2B O2B NDP sing 528 n n C2B C1B NDP sing 529 n n C2B H2B NDP sing 530 n n O2B P2B NDP sing 531 n n C1B N9A NDP sing 532 n n C1B H1B NDP sing 533 n n N9A C8A NDP sing 534 n y N9A C4A NDP sing 535 n y C8A N7A NDP doub 536 n y C8A H8A NDP sing 537 n n N7A C5A NDP sing 538 n y C5A C6A NDP sing 539 n y C5A C4A NDP doub 540 n y C6A N6A NDP sing 541 n n C6A N1A NDP doub 542 n y N6A H61A NDP sing 543 n n N6A H62A NDP sing 544 n n N1A C2A NDP sing 545 n y C2A N3A NDP doub 546 n y C2A H2A NDP sing 547 n n N3A C4A NDP sing 548 n y O3 PN NDP sing 549 n n PN O1N NDP doub 550 n n PN O2N NDP sing 551 n n PN O5D NDP sing 552 n n O2N H21N NDP sing 553 n n O5D C5D NDP sing 554 n n C5D C4D NDP sing 555 n n C5D H51N NDP sing 556 n n C5D H52N NDP sing 557 n n C4D O4D NDP sing 558 n n C4D C3D NDP sing 559 n n C4D H4D NDP sing 560 n n O4D C1D NDP sing 561 n n C3D O3D NDP sing 562 n n C3D C2D NDP sing 563 n n C3D H3D NDP sing 564 n n O3D HO3N NDP sing 565 n n C2D O2D NDP sing 566 n n C2D C1D NDP sing 567 n n C2D H2D NDP sing 568 n n O2D HO2N NDP sing 569 n n C1D N1N NDP sing 570 n n C1D H1D NDP sing 571 n n N1N C2N NDP sing 572 n n N1N C6N NDP sing 573 n n C2N C3N NDP doub 574 n n C2N H2N NDP sing 575 n n C3N C7N NDP sing 576 n n C3N C4N NDP sing 577 n n C7N O7N NDP doub 578 n n C7N N7N NDP sing 579 n n N7N H71N NDP sing 580 n n N7N H72N NDP sing 581 n n C4N C5N NDP sing 582 n n C4N H41N NDP sing 583 n n C4N H42N NDP sing 584 n n C5N C6N NDP doub 585 n n C5N H5N NDP sing 586 n n C6N H6N NDP sing 587 n n P2B O1X NDP doub 588 n n P2B O2X NDP sing 589 n n P2B O3X NDP sing 590 n n O2X HOP2 NDP sing 591 n n O3X HOP3 NDP sing 592 n n # _atom_sites.entry_id 8XNU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 3PE A 1 401 401 3PE 3PE . Y 25 SF4 B 1 301 236 SF4 SF4 . Z 26 FES E 1 301 332 FES FES . AA 27 FMN F 1 501 521 FMN FMN . BA 25 SF4 F 1 502 522 SF4 SF4 . CA 25 SF4 G 1 801 824 SF4 SF4 . DA 25 SF4 G 1 802 825 SF4 SF4 . EA 26 FES G 1 803 826 FES FES . FA 28 UQ9 H 1 400 400 UQ9 UQ9 . GA 24 3PE I 1 301 403 3PE 3PE . HA 25 SF4 I 1 302 235 SF4 SF4 . IA 25 SF4 I 1 303 236 SF4 SF4 . JA 29 NDP P 1 401 536 NDP NDP . KA 30 ZN R 1 201 221 ZN ZN . LA 31 EHZ W 1 201 201 EHZ EHZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . JA 29 248.119 169.208 203.559 1 42.05 0 PA NDP 401 P 1 HETATM 2 O O1A NDP . . . JA 29 247.321 168.907 202.317 1 42.05 -1 O1A NDP 401 P 1 HETATM 3 O O2A NDP . . . JA 29 248.585 170.613 203.835 1 42.05 0 O2A NDP 401 P 1 HETATM 4 O O5B NDP . . . JA 29 249.393 168.233 203.579 1 42.05 0 O5B NDP 401 P 1 HETATM 5 C C5B NDP . . . JA 29 250.13 168.104 204.787 1 42.05 0 C5B NDP 401 P 1 HETATM 6 C C4B NDP . . . JA 29 251.587 167.811 204.478 1 42.05 0 C4B NDP 401 P 1 HETATM 7 O O4B NDP . . . JA 29 251.762 166.448 204.091 1 42.05 0 O4B NDP 401 P 1 HETATM 8 C C3B NDP . . . JA 29 252.094 168.66 203.331 1 42.05 0 C3B NDP 401 P 1 HETATM 9 O O3B NDP . . . JA 29 253.072 169.581 203.809 1 42.05 0 O3B NDP 401 P 1 HETATM 10 C C2B NDP . . . JA 29 252.693 167.692 202.338 1 42.05 0 C2B NDP 401 P 1 HETATM 11 O O2B NDP . . . JA 29 253.977 168.126 201.916 1 42.05 0 O2B NDP 401 P 1 HETATM 12 C C1B NDP . . . JA 29 252.775 166.381 203.092 1 42.05 0 C1B NDP 401 P 1 HETATM 13 N N9A NDP . . . JA 29 252.529 165.241 202.186 1 42.05 0 N9A NDP 401 P 1 HETATM 14 C C8A NDP . . . JA 29 251.422 165.032 201.458 1 42.05 0 C8A NDP 401 P 1 HETATM 15 N N7A NDP . . . JA 29 251.526 163.89 200.733 1 42.05 0 N7A NDP 401 P 1 HETATM 16 C C5A NDP . . . JA 29 252.725 163.354 201 1 42.05 0 C5A NDP 401 P 1 HETATM 17 C C6A NDP . . . JA 29 253.472 162.155 200.575 1 42.05 0 C6A NDP 401 P 1 HETATM 18 N N6A NDP . . . JA 29 252.939 161.277 199.694 1 42.05 0 N6A NDP 401 P 1 HETATM 19 N N1A NDP . . . JA 29 254.702 161.964 201.093 1 42.05 0 N1A NDP 401 P 1 HETATM 20 C C2A NDP . . . JA 29 255.24 162.825 201.97 1 42.05 0 C2A NDP 401 P 1 HETATM 21 N N3A NDP . . . JA 29 254.618 163.933 202.396 1 42.05 0 N3A NDP 401 P 1 HETATM 22 C C4A NDP . . . JA 29 253.382 164.247 201.957 1 42.05 0 C4A NDP 401 P 1 HETATM 23 O O3 NDP . . . JA 29 247.294 168.692 204.835 1 42.05 0 O3 NDP 401 P 1 HETATM 24 P PN NDP . . . JA 29 246.916 169.707 206.019 1 42.05 0 PN NDP 401 P 1 HETATM 25 O O1N NDP . . . JA 29 248.184 170.315 206.557 1 42.05 -1 O1N NDP 401 P 1 HETATM 26 O O2N NDP . . . JA 29 245.804 170.602 205.537 1 42.05 0 O2N NDP 401 P 1 HETATM 27 O O5D NDP . . . JA 29 246.325 168.718 207.134 1 42.05 0 O5D NDP 401 P 1 HETATM 28 C C5D NDP . . . JA 29 247.216 168.026 208.004 1 42.05 0 C5D NDP 401 P 1 HETATM 29 C C4D NDP . . . JA 29 246.611 166.671 208.331 1 42.05 0 C4D NDP 401 P 1 HETATM 30 O O4D NDP . . . JA 29 245.43 166.832 209.112 1 42.05 0 O4D NDP 401 P 1 HETATM 31 C C3D NDP . . . JA 29 246.224 165.936 207.069 1 42.05 0 C3D NDP 401 P 1 HETATM 32 O O3D NDP . . . JA 29 246.935 164.702 207.017 1 42.05 0 O3D NDP 401 P 1 HETATM 33 C C2D NDP . . . JA 29 244.736 165.697 207.158 1 42.05 0 C2D NDP 401 P 1 HETATM 34 O O2D NDP . . . JA 29 244.42 164.327 206.921 1 42.05 0 O2D NDP 401 P 1 HETATM 35 C C1D NDP . . . JA 29 244.345 166.088 208.567 1 42.05 0 C1D NDP 401 P 1 HETATM 36 N N1N NDP . . . JA 29 243.153 166.928 208.551 1 42.05 0 N1N NDP 401 P 1 HETATM 37 C C2N NDP . . . JA 29 243.176 168.058 207.846 1 42.05 0 C2N NDP 401 P 1 HETATM 38 C C3N NDP . . . JA 29 242.083 168.905 207.796 1 42.05 0 C3N NDP 401 P 1 HETATM 39 C C7N NDP . . . JA 29 242.168 170.155 206.98 1 42.05 0 C7N NDP 401 P 1 HETATM 40 O O7N NDP . . . JA 29 243.063 170.273 206.163 1 42.05 0 O7N NDP 401 P 1 HETATM 41 N N7N NDP . . . JA 29 241.259 171.108 207.172 1 42.05 0 N7N NDP 401 P 1 HETATM 42 C C4N NDP . . . JA 29 240.812 168.589 208.539 1 42.05 0 C4N NDP 401 P 1 HETATM 43 C C5N NDP . . . JA 29 240.923 167.335 209.27 1 42.05 0 C5N NDP 401 P 1 HETATM 44 C C6N NDP . . . JA 29 242.077 166.564 209.247 1 42.05 0 C6N NDP 401 P 1 HETATM 45 P P2B NDP . . . JA 29 254.279 168.453 200.371 1 42.05 0 P2B NDP 401 P 1 HETATM 46 O O1X NDP . . . JA 29 253.07 169.232 199.93 1 42.05 0 O1X NDP 401 P 1 HETATM 47 O O2X NDP . . . JA 29 254.417 167.094 199.733 1 42.05 -1 O2X NDP 401 P 1 HETATM 48 O O3X NDP . . . JA 29 255.556 169.255 200.413 1 42.05 0 O3X NDP 401 P 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #