data_8XNU
#
_model_server_result.job_id            KhAHQL_czaBWz_Hde_X4qw 
_model_server_result.datetime_utc      '2024-12-22 08:52:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xnu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":501}' 
#
_entry.id    8XNU 
#
_exptl.entry_id    8XNU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          27 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    23-meric 
_pdbx_struct_assembly.oligomeric_count      23 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      27 
_struct_asym.id                             AA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 Y FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 B SG CYS 194 B CYS 194 1_555 Y FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc3 E SG CYS 134 E CYS 134 1_555 Z FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc4 E SG CYS 175 E CYS 175 1_555 Z FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc5 F SG CYS 385 F CYS 385 1_555 BA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc6 G O PHE 63 G PHE 63 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 G SG CYS 75 G CYS 75 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc8 G NE2 HIS 124 G HIS 124 1_555 CA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 G SG CYS 128 G CYS 128 1_555 CA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc10 G SG CYS 137 G CYS 137 1_555 CA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc11 G SG CYS 182 G CYS 182 1_555 DA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc12 I SG CYS 116 I CYS 116 1_555 IA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc13 I SG CYS 119 I CYS 119 1_555 IA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc14 I SG CYS 158 I CYS 158 1_555 HA FE3 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc15 L SG CYS 79 R CYS 79 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc16 L NE2 HIS 88 R HIS 88 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc17 L SG CYS 104 R CYS 104 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc18 L SG CYS 107 R CYS 107 1_555 KA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 305 n n 
N1 C10 FMN doub 306 n n 
C2 O2 FMN doub 307 n n 
C2 N3 FMN sing 308 n n 
N3 C4 FMN sing 309 n n 
N3 HN3 FMN sing 310 n n 
C4 O4 FMN doub 311 n n 
C4 C4A FMN sing 312 n n 
C4A N5 FMN doub 313 n n 
C4A C10 FMN sing 314 n n 
N5 C5A FMN sing 315 n n 
C5A C6 FMN doub 316 n y 
C5A C9A FMN sing 317 n y 
C6 C7 FMN sing 318 n y 
C6 H6 FMN sing 319 n n 
C7 C7M FMN sing 320 n n 
C7 C8 FMN doub 321 n y 
C7M HM71 FMN sing 322 n n 
C7M HM72 FMN sing 323 n n 
C7M HM73 FMN sing 324 n n 
C8 C8M FMN sing 325 n n 
C8 C9 FMN sing 326 n y 
C8M HM81 FMN sing 327 n n 
C8M HM82 FMN sing 328 n n 
C8M HM83 FMN sing 329 n n 
C9 C9A FMN doub 330 n y 
C9 H9 FMN sing 331 n n 
C9A N10 FMN sing 332 n n 
N10 C10 FMN sing 333 n n 
N10 C1' FMN sing 334 n n 
C1' C2' FMN sing 335 n n 
C1' "H1'1" FMN sing 336 n n 
C1' "H1'2" FMN sing 337 n n 
C2' O2' FMN sing 338 n n 
C2' C3' FMN sing 339 n n 
C2' H2' FMN sing 340 n n 
O2' HO2' FMN sing 341 n n 
C3' O3' FMN sing 342 n n 
C3' C4' FMN sing 343 n n 
C3' H3' FMN sing 344 n n 
O3' HO3' FMN sing 345 n n 
C4' O4' FMN sing 346 n n 
C4' C5' FMN sing 347 n n 
C4' H4' FMN sing 348 n n 
O4' HO4' FMN sing 349 n n 
C5' O5' FMN sing 350 n n 
C5' "H5'1" FMN sing 351 n n 
C5' "H5'2" FMN sing 352 n n 
O5' P FMN sing 353 n n 
P O1P FMN doub 354 n n 
P O2P FMN sing 355 n n 
P O3P FMN sing 356 n n 
O2P HOP2 FMN sing 357 n n 
O3P HOP3 FMN sing 358 n n 
#
_atom_sites.entry_id                     8XNU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
X 24 3PE A 1 401 401 3PE 3PE . 
Y 25 SF4 B 1 301 236 SF4 SF4 . 
Z 26 FES E 1 301 332 FES FES . 
AA 27 FMN F 1 501 521 FMN FMN . 
BA 25 SF4 F 1 502 522 SF4 SF4 . 
CA 25 SF4 G 1 801 824 SF4 SF4 . 
DA 25 SF4 G 1 802 825 SF4 SF4 . 
EA 26 FES G 1 803 826 FES FES . 
FA 28 UQ9 H 1 400 400 UQ9 UQ9 . 
GA 24 3PE I 1 301 403 3PE 3PE . 
HA 25 SF4 I 1 302 235 SF4 SF4 . 
IA 25 SF4 I 1 303 236 SF4 SF4 . 
JA 29 NDP P 1 401 536 NDP NDP . 
KA 30 ZN R 1 201 221 ZN ZN . 
LA 31 EHZ W 1 201 201 EHZ EHZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . AA 27 330.938 201.631 259.508 1 51.43 0 N1 FMN 501 F 1 
HETATM 2 C C2 FMN . . . AA 27 332.003 200.976 260.021 1 51.43 0 C2 FMN 501 F 1 
HETATM 3 O O2 FMN . . . AA 27 332.57 201.466 261.017 1 51.43 0 O2 FMN 501 F 1 
HETATM 4 N N3 FMN . . . AA 27 332.475 199.832 259.501 1 51.43 0 N3 FMN 501 F 1 
HETATM 5 C C4 FMN . . . AA 27 331.922 199.256 258.432 1 51.43 0 C4 FMN 501 F 1 
HETATM 6 O O4 FMN . . . AA 27 332.37 198.191 257.958 1 51.43 0 O4 FMN 501 F 1 
HETATM 7 C C4A FMN . . . AA 27 330.75 199.908 257.816 1 51.43 0 C4A FMN 501 F 1 
HETATM 8 N N5 FMN . . . AA 27 330.138 199.387 256.742 1 51.43 0 N5 FMN 501 F 1 
HETATM 9 C C5A FMN . . . AA 27 329.072 200.005 256.201 1 51.43 0 C5A FMN 501 F 1 
HETATM 10 C C6 FMN . . . AA 27 328.467 199.44 255.094 1 51.43 0 C6 FMN 501 F 1 
HETATM 11 C C7 FMN . . . AA 27 327.37 200.055 254.521 1 51.43 0 C7 FMN 501 F 1 
HETATM 12 C C7M FMN . . . AA 27 326.716 199.438 253.318 1 51.43 0 C7M FMN 501 F 1 
HETATM 13 C C8 FMN . . . AA 27 326.842 201.318 255.088 1 51.43 0 C8 FMN 501 F 1 
HETATM 14 C C8M FMN . . . AA 27 325.65 201.97 254.447 1 51.43 0 C8M FMN 501 F 1 
HETATM 15 C C9 FMN . . . AA 27 327.446 201.891 256.2 1 51.43 0 C9 FMN 501 F 1 
HETATM 16 C C9A FMN . . . AA 27 328.545 201.272 256.777 1 51.43 0 C9A FMN 501 F 1 
HETATM 17 N N10 FMN . . . AA 27 329.181 201.828 257.9 1 51.43 0 N10 FMN 501 F 1 
HETATM 18 C C10 FMN . . . AA 27 330.284 201.159 258.437 1 51.43 0 C10 FMN 501 F 1 
HETATM 19 C C1' FMN . . . AA 27 328.728 203.068 258.528 1 51.43 0 C1' FMN 501 F 1 
HETATM 20 C C2' FMN . . . AA 27 327.925 202.684 259.76 1 51.43 0 C2' FMN 501 F 1 
HETATM 21 O O2' FMN . . . AA 27 326.583 202.402 259.364 1 51.43 0 O2' FMN 501 F 1 
HETATM 22 C C3' FMN . . . AA 27 327.907 203.803 260.788 1 51.43 0 C3' FMN 501 F 1 
HETATM 23 O O3' FMN . . . AA 27 327.376 204.986 260.188 1 51.43 0 O3' FMN 501 F 1 
HETATM 24 C C4' FMN . . . AA 27 329.31 204.085 261.296 1 51.43 0 C4' FMN 501 F 1 
HETATM 25 O O4' FMN . . . AA 27 329.951 202.847 261.606 1 51.43 0 O4' FMN 501 F 1 
HETATM 26 C C5' FMN . . . AA 27 329.265 204.968 262.536 1 51.43 0 C5' FMN 501 F 1 
HETATM 27 O O5' FMN . . . AA 27 330.587 205.216 263.002 1 51.43 0 O5' FMN 501 F 1 
HETATM 28 P P FMN . . . AA 27 330.962 206.679 263.551 1 51.43 0 P FMN 501 F 1 
HETATM 29 O O1P FMN . . . AA 27 331.776 207.272 262.428 1 51.43 0 O1P FMN 501 F 1 
HETATM 30 O O2P FMN . . . AA 27 329.622 207.333 263.774 1 51.43 -1 O2P FMN 501 F 1 
HETATM 31 O O3P FMN . . . AA 27 331.742 206.428 264.814 1 51.43 0 O3P FMN 501 F 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    153 
_model_server_stats.query_time_ms           1197 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#