data_8XNV # _model_server_result.job_id nVOeW1yndBZ6PbkYls5x5A _model_server_result.datetime_utc '2024-11-30 17:54:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":401}' # _entry.id 8XNV # _exptl.entry_id 8XNV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 31 _struct_asym.id NA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 Q SG CYS 36 X CYS 36 1_555 Q SG CYS 66 X CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 Q SG CYS 78 X CYS 78 1_555 Q SG CYS 110 X CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 B SG CYS 164 B CYS 164 1_555 Y FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 B O CYS 194 B CYS 194 1_555 Y FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc3 E SG CYS 139 E CYS 139 1_555 CA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc4 E SG CYS 175 E CYS 175 1_555 CA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc5 E SG CYS 179 E CYS 179 1_555 CA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 F SG CYS 385 F CYS 385 1_555 EA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc7 G O PHE 63 G PHE 63 1_555 HA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc8 G SG CYS 64 G CYS 64 1_555 HA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc9 G SG CYS 78 G CYS 78 1_555 HA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 G SG CYS 92 G CYS 92 1_555 HA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc11 G NE2 HIS 124 G HIS 124 1_555 FA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc12 G SG CYS 128 G CYS 128 1_555 FA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc13 G SG CYS 137 G CYS 137 1_555 FA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc14 I SG CYS 116 I CYS 116 1_555 MA FE4 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc15 I SG CYS 119 I CYS 119 1_555 MA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc16 I SG CYS 158 I CYS 158 1_555 LA FE4 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc17 I SG CYS 162 I CYS 162 1_555 MA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc18 L SG CYS 79 R CYS 79 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc19 L NE2 HIS 88 R HIS 88 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc20 L SG CYS 104 R CYS 104 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc21 L SG CYS 107 R CYS 107 1_555 OA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 766 n n PA O2A NDP sing 767 n n PA O5B NDP sing 768 n n PA O3 NDP sing 769 n n O2A HOA2 NDP sing 770 n n O5B C5B NDP sing 771 n n C5B C4B NDP sing 772 n n C5B H51A NDP sing 773 n n C5B H52A NDP sing 774 n n C4B O4B NDP sing 775 n n C4B C3B NDP sing 776 n n C4B H4B NDP sing 777 n n O4B C1B NDP sing 778 n n C3B O3B NDP sing 779 n n C3B C2B NDP sing 780 n n C3B H3B NDP sing 781 n n O3B HO3A NDP sing 782 n n C2B O2B NDP sing 783 n n C2B C1B NDP sing 784 n n C2B H2B NDP sing 785 n n O2B P2B NDP sing 786 n n C1B N9A NDP sing 787 n n C1B H1B NDP sing 788 n n N9A C8A NDP sing 789 n y N9A C4A NDP sing 790 n y C8A N7A NDP doub 791 n y C8A H8A NDP sing 792 n n N7A C5A NDP sing 793 n y C5A C6A NDP sing 794 n y C5A C4A NDP doub 795 n y C6A N6A NDP sing 796 n n C6A N1A NDP doub 797 n y N6A H61A NDP sing 798 n n N6A H62A NDP sing 799 n n N1A C2A NDP sing 800 n y C2A N3A NDP doub 801 n y C2A H2A NDP sing 802 n n N3A C4A NDP sing 803 n y O3 PN NDP sing 804 n n PN O1N NDP doub 805 n n PN O2N NDP sing 806 n n PN O5D NDP sing 807 n n O2N H21N NDP sing 808 n n O5D C5D NDP sing 809 n n C5D C4D NDP sing 810 n n C5D H51N NDP sing 811 n n C5D H52N NDP sing 812 n n C4D O4D NDP sing 813 n n C4D C3D NDP sing 814 n n C4D H4D NDP sing 815 n n O4D C1D NDP sing 816 n n C3D O3D NDP sing 817 n n C3D C2D NDP sing 818 n n C3D H3D NDP sing 819 n n O3D HO3N NDP sing 820 n n C2D O2D NDP sing 821 n n C2D C1D NDP sing 822 n n C2D H2D NDP sing 823 n n O2D HO2N NDP sing 824 n n C1D N1N NDP sing 825 n n C1D H1D NDP sing 826 n n N1N C2N NDP sing 827 n n N1N C6N NDP sing 828 n n C2N C3N NDP doub 829 n n C2N H2N NDP sing 830 n n C3N C7N NDP sing 831 n n C3N C4N NDP sing 832 n n C7N O7N NDP doub 833 n n C7N N7N NDP sing 834 n n N7N H71N NDP sing 835 n n N7N H72N NDP sing 836 n n C4N C5N NDP sing 837 n n C4N H41N NDP sing 838 n n C4N H42N NDP sing 839 n n C5N C6N NDP doub 840 n n C5N H5N NDP sing 841 n n C6N H6N NDP sing 842 n n P2B O1X NDP doub 843 n n P2B O2X NDP sing 844 n n P2B O3X NDP sing 845 n n O2X HOP2 NDP sing 846 n n O3X HOP3 NDP sing 847 n n # _atom_sites.entry_id 8XNV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 3PE A 1 201 201 3PE 3PE . Y 25 SF4 B 1 301 236 SF4 SF4 . Z 26 PC1 B 1 302 406 PC1 PC1 . AA 26 PC1 B 1 303 436 PC1 PC1 . BA 27 UQ1 D 1 501 502 UQ1 UQ1 . CA 28 FES E 1 301 332 FES FES . DA 29 FMN F 1 501 521 FMN FMN . EA 25 SF4 F 1 502 522 SF4 SF4 . FA 25 SF4 G 1 801 824 SF4 SF4 . GA 25 SF4 G 1 802 825 SF4 SF4 . HA 28 FES G 1 803 826 FES FES . IA 30 UQ9 H 1 400 400 UQ9 UQ9 . JA 24 3PE H 1 401 401 3PE 3PE . KA 24 3PE I 1 301 403 3PE 3PE . LA 25 SF4 I 1 302 235 SF4 SF4 . MA 25 SF4 I 1 303 236 SF4 SF4 . NA 31 NDP P 1 401 536 NDP NDP . OA 32 ZN R 1 201 221 ZN ZN . PA 33 EHZ W 1 201 201 EHZ EHZ . QA 34 CDL a 1 101 405 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . NA 31 245.686 171.391 205.451 1 42.05 0 PA NDP 401 P 1 HETATM 2 O O1A NDP . . . NA 31 245.073 171.085 204.111 1 42.05 -1 O1A NDP 401 P 1 HETATM 3 O O2A NDP . . . NA 31 246.133 172.794 205.778 1 42.05 0 O2A NDP 401 P 1 HETATM 4 O O5B NDP . . . NA 31 246.919 170.39 205.67 1 42.05 0 O5B NDP 401 P 1 HETATM 5 C C5B NDP . . . NA 31 247.561 170.365 206.937 1 42.05 0 C5B NDP 401 P 1 HETATM 6 C C4B NDP . . . NA 31 249.051 170.181 206.734 1 42.05 0 C4B NDP 401 P 1 HETATM 7 O O4B NDP . . . NA 31 249.348 168.824 206.426 1 42.05 0 O4B NDP 401 P 1 HETATM 8 C C3B NDP . . . NA 31 249.546 171.021 205.577 1 42.05 0 C3B NDP 401 P 1 HETATM 9 O O3B NDP . . . NA 31 250.474 171.99 206.058 1 42.05 0 O3B NDP 401 P 1 HETATM 10 C C2B NDP . . . NA 31 250.202 170.05 204.626 1 42.05 0 C2B NDP 401 P 1 HETATM 11 O O2B NDP . . . NA 31 251.465 170.53 204.187 1 42.05 0 O2B NDP 401 P 1 HETATM 12 C C1B NDP . . . NA 31 250.354 168.779 205.424 1 42.05 0 C1B NDP 401 P 1 HETATM 13 N N9A NDP . . . NA 31 250.137 167.616 204.547 1 42.05 0 N9A NDP 401 P 1 HETATM 14 C C8A NDP . . . NA 31 249.056 167.4 203.784 1 42.05 0 C8A NDP 401 P 1 HETATM 15 N N7A NDP . . . NA 31 249.178 166.237 203.095 1 42.05 0 N7A NDP 401 P 1 HETATM 16 C C5A NDP . . . NA 31 250.36 165.699 203.424 1 42.05 0 C5A NDP 401 P 1 HETATM 17 C C6A NDP . . . NA 31 251.11 164.484 203.062 1 42.05 0 C6A NDP 401 P 1 HETATM 18 N N6A NDP . . . NA 31 250.601 163.589 202.188 1 42.05 0 N6A NDP 401 P 1 HETATM 19 N N1A NDP . . . NA 31 252.317 164.3 203.629 1 42.05 0 N1A NDP 401 P 1 HETATM 20 C C2A NDP . . . NA 31 252.829 165.179 204.5 1 42.05 0 C2A NDP 401 P 1 HETATM 21 N N3A NDP . . . NA 31 252.203 166.304 204.874 1 42.05 0 N3A NDP 401 P 1 HETATM 22 C C4A NDP . . . NA 31 250.989 166.613 204.379 1 42.05 0 C4A NDP 401 P 1 HETATM 23 O O3 NDP . . . NA 31 244.672 170.919 206.597 1 42.05 0 O3 NDP 401 P 1 HETATM 24 P PN NDP . . . NA 31 244.394 171.894 207.835 1 42.05 0 PN NDP 401 P 1 HETATM 25 O O1N NDP . . . NA 31 245.719 172.323 208.4 1 42.05 -1 O1N NDP 401 P 1 HETATM 26 O O2N NDP . . . NA 31 243.381 172.92 207.402 1 42.05 0 O2N NDP 401 P 1 HETATM 27 O O5D NDP . . . NA 31 243.714 170.913 208.905 1 42.05 0 O5D NDP 401 P 1 HETATM 28 C C5D NDP . . . NA 31 244.525 170.251 209.872 1 42.05 0 C5D NDP 401 P 1 HETATM 29 C C4D NDP . . . NA 31 243.814 168.984 210.307 1 42.05 0 C4D NDP 401 P 1 HETATM 30 O O4D NDP . . . NA 31 242.625 169.309 211.019 1 42.05 0 O4D NDP 401 P 1 HETATM 31 C C3D NDP . . . NA 31 243.411 168.154 209.108 1 42.05 0 C3D NDP 401 P 1 HETATM 32 O O3D NDP . . . NA 31 244.061 166.889 209.165 1 42.05 0 O3D NDP 401 P 1 HETATM 33 C C2D NDP . . . NA 31 241.912 167.991 209.196 1 42.05 0 C2D NDP 401 P 1 HETATM 34 O O2D NDP . . . NA 31 241.539 166.62 209.07 1 42.05 0 O2D NDP 401 P 1 HETATM 35 C C1D NDP . . . NA 31 241.529 168.524 210.562 1 42.05 0 C1D NDP 401 P 1 HETATM 36 N N1N NDP . . . NA 31 240.331 169.352 210.473 1 42.05 0 N1N NDP 401 P 1 HETATM 37 C C2N NDP . . . NA 31 240.364 170.474 209.756 1 42.05 0 C2N NDP 401 P 1 HETATM 38 C C3N NDP . . . NA 31 239.251 171.293 209.645 1 42.05 0 C3N NDP 401 P 1 HETATM 39 C C7N NDP . . . NA 31 239.337 172.542 208.826 1 42.05 0 C7N NDP 401 P 1 HETATM 40 O O7N NDP . . . NA 31 240.344 172.767 208.182 1 42.05 0 O7N NDP 401 P 1 HETATM 41 N N7N NDP . . . NA 31 238.295 173.371 208.821 1 42.05 0 N7N NDP 401 P 1 HETATM 42 C C4N NDP . . . NA 31 237.951 170.957 210.329 1 42.05 0 C4N NDP 401 P 1 HETATM 43 C C5N NDP . . . NA 31 238.056 169.714 211.072 1 42.05 0 C5N NDP 401 P 1 HETATM 44 C C6N NDP . . . NA 31 239.226 168.97 211.113 1 42.05 0 C6N NDP 401 P 1 HETATM 45 P P2B NDP . . . NA 31 251.923 170.374 202.656 1 42.05 0 P2B NDP 401 P 1 HETATM 46 O O1X NDP . . . NA 31 251.601 171.713 202.052 1 42.05 0 O1X NDP 401 P 1 HETATM 47 O O2X NDP . . . NA 31 251.098 169.229 202.139 1 42.05 -1 O2X NDP 401 P 1 HETATM 48 O O3X NDP . . . NA 31 253.391 170.052 202.745 1 42.05 0 O3X NDP 401 P 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 571 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #