data_8XNW # _model_server_result.job_id mohQnBuwI7OgbP6EW7gxaQ _model_server_result.datetime_utc '2024-12-22 10:09:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":501}' # _entry.id 8XNW # _exptl.entry_id 8XNW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 28 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 28 _struct_asym.id BA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 Q SG CYS 36 X CYS 36 1_555 Q SG CYS 66 X CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 Q SG CYS 78 X CYS 78 1_555 Q SG CYS 110 X CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 X FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B O CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc3 B SG CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 E SG CYS 139 E CYS 139 1_555 AA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc5 E SG CYS 175 E CYS 175 1_555 AA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc6 E SG CYS 179 E CYS 179 1_555 AA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 F SG CYS 385 F CYS 385 1_555 CA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc8 G O PHE 63 G PHE 63 1_555 FA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc9 G SG CYS 64 G CYS 64 1_555 FA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc10 G SG CYS 78 G CYS 78 1_555 FA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc11 G SG CYS 92 G CYS 92 1_555 FA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc12 G NE2 HIS 124 G HIS 124 1_555 DA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc13 G SG CYS 128 G CYS 128 1_555 DA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc14 G SG CYS 137 G CYS 137 1_555 DA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc15 I SG CYS 116 I CYS 116 1_555 JA FE4 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc16 I SG CYS 119 I CYS 119 1_555 JA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc17 I SG CYS 158 I CYS 158 1_555 IA FE4 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc18 I SG CYS 162 I CYS 162 1_555 JA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc19 L SG CYS 79 R CYS 79 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc20 L NE2 HIS 88 R HIS 88 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc21 L SG CYS 104 R CYS 104 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc22 L SG CYS 107 R CYS 107 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 560 n n N1 C10 FMN doub 561 n n C2 O2 FMN doub 562 n n C2 N3 FMN sing 563 n n N3 C4 FMN sing 564 n n N3 HN3 FMN sing 565 n n C4 O4 FMN doub 566 n n C4 C4A FMN sing 567 n n C4A N5 FMN doub 568 n n C4A C10 FMN sing 569 n n N5 C5A FMN sing 570 n n C5A C6 FMN doub 571 n y C5A C9A FMN sing 572 n y C6 C7 FMN sing 573 n y C6 H6 FMN sing 574 n n C7 C7M FMN sing 575 n n C7 C8 FMN doub 576 n y C7M HM71 FMN sing 577 n n C7M HM72 FMN sing 578 n n C7M HM73 FMN sing 579 n n C8 C8M FMN sing 580 n n C8 C9 FMN sing 581 n y C8M HM81 FMN sing 582 n n C8M HM82 FMN sing 583 n n C8M HM83 FMN sing 584 n n C9 C9A FMN doub 585 n y C9 H9 FMN sing 586 n n C9A N10 FMN sing 587 n n N10 C10 FMN sing 588 n n N10 C1' FMN sing 589 n n C1' C2' FMN sing 590 n n C1' "H1'1" FMN sing 591 n n C1' "H1'2" FMN sing 592 n n C2' O2' FMN sing 593 n n C2' C3' FMN sing 594 n n C2' H2' FMN sing 595 n n O2' HO2' FMN sing 596 n n C3' O3' FMN sing 597 n n C3' C4' FMN sing 598 n n C3' H3' FMN sing 599 n n O3' HO3' FMN sing 600 n n C4' O4' FMN sing 601 n n C4' C5' FMN sing 602 n n C4' H4' FMN sing 603 n n O4' HO4' FMN sing 604 n n C5' O5' FMN sing 605 n n C5' "H5'1" FMN sing 606 n n C5' "H5'2" FMN sing 607 n n O5' P FMN sing 608 n n P O1P FMN doub 609 n n P O2P FMN sing 610 n n P O3P FMN sing 611 n n O2P HOP2 FMN sing 612 n n O3P HOP3 FMN sing 613 n n # _atom_sites.entry_id 8XNW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 SF4 B 1 301 236 SF4 SF4 . Y 25 UQ9 B 1 302 399 UQ9 UQ9 . Z 26 PC1 B 1 303 406 PC1 PC1 . AA 27 FES E 1 301 332 FES FES . BA 28 FMN F 1 501 521 FMN FMN . CA 24 SF4 F 1 502 522 SF4 SF4 . DA 24 SF4 G 1 801 824 SF4 SF4 . EA 24 SF4 G 1 802 825 SF4 SF4 . FA 27 FES G 1 803 826 FES FES . GA 25 UQ9 H 1 400 400 UQ9 UQ9 . HA 29 3PE I 1 301 403 3PE 3PE . IA 24 SF4 I 1 302 235 SF4 SF4 . JA 24 SF4 I 1 303 236 SF4 SF4 . KA 30 NDP P 1 401 536 NDP NDP . LA 31 ZN R 1 201 221 ZN ZN . MA 32 EHZ W 1 201 201 EHZ EHZ . NA 33 CDL q 1 201 405 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . BA 28 322.657 202.946 265.84 1 51.43 0 N1 FMN 501 F 1 HETATM 2 C C2 FMN . . . BA 28 323.723 202.366 266.439 1 51.43 0 C2 FMN 501 F 1 HETATM 3 O O2 FMN . . . BA 28 324.18 202.886 267.474 1 51.43 0 O2 FMN 501 F 1 HETATM 4 N N3 FMN . . . BA 28 324.303 201.254 265.967 1 51.43 0 N3 FMN 501 F 1 HETATM 5 C C4 FMN . . . BA 28 323.874 200.639 264.866 1 51.43 0 C4 FMN 501 F 1 HETATM 6 O O4 FMN . . . BA 28 324.428 199.604 264.435 1 51.43 0 O4 FMN 501 F 1 HETATM 7 C C4A FMN . . . BA 28 322.72 201.205 264.153 1 51.43 0 C4A FMN 501 F 1 HETATM 8 N N5 FMN . . . BA 28 322.235 200.636 263.036 1 51.43 0 N5 FMN 501 F 1 HETATM 9 C C5A FMN . . . BA 28 321.177 201.176 262.405 1 51.43 0 C5A FMN 501 F 1 HETATM 10 C C6 FMN . . . BA 28 320.701 200.563 261.259 1 51.43 0 C6 FMN 501 F 1 HETATM 11 C C7 FMN . . . BA 28 319.617 201.1 260.593 1 51.43 0 C7 FMN 501 F 1 HETATM 12 C C7M FMN . . . BA 28 319.102 200.437 259.347 1 51.43 0 C7M FMN 501 F 1 HETATM 13 C C8 FMN . . . BA 28 318.964 202.328 261.106 1 51.43 0 C8 FMN 501 F 1 HETATM 14 C C8M FMN . . . BA 28 317.786 202.903 260.37 1 51.43 0 C8M FMN 501 F 1 HETATM 15 C C9 FMN . . . BA 28 319.438 202.947 262.254 1 51.43 0 C9 FMN 501 F 1 HETATM 16 C C9A FMN . . . BA 28 320.526 202.409 262.925 1 51.43 0 C9A FMN 501 F 1 HETATM 17 N N10 FMN . . . BA 28 321.027 203.015 264.09 1 51.43 0 N10 FMN 501 F 1 HETATM 18 C C10 FMN . . . BA 28 322.125 202.426 264.722 1 51.43 0 C10 FMN 501 F 1 HETATM 19 C C1' FMN . . . BA 28 320.446 204.227 264.66 1 51.43 0 C1' FMN 501 F 1 HETATM 20 C C2' FMN . . . BA 28 319.393 203.833 265.677 1 51.43 0 C2' FMN 501 F 1 HETATM 21 O O2' FMN . . . BA 28 318.139 203.728 265.003 1 51.43 0 O2' FMN 501 F 1 HETATM 22 C C3' FMN . . . BA 28 319.28 204.869 266.779 1 51.43 0 C3' FMN 501 F 1 HETATM 23 O O3' FMN . . . BA 28 318.926 206.13 266.204 1 51.43 0 O3' FMN 501 F 1 HETATM 24 C C4' FMN . . . BA 28 320.601 205.012 267.516 1 51.43 0 C4' FMN 501 F 1 HETATM 25 O O4' FMN . . . BA 28 321.093 203.71 267.849 1 51.43 0 O4' FMN 501 F 1 HETATM 26 C C5' FMN . . . BA 28 320.419 205.842 268.783 1 51.43 0 C5' FMN 501 F 1 HETATM 27 O O5' FMN . . . BA 28 321.679 206.036 269.422 1 51.43 0 O5' FMN 501 F 1 HETATM 28 P P FMN . . . BA 28 322.071 207.497 269.965 1 51.43 0 P FMN 501 F 1 HETATM 29 O O1P FMN . . . BA 28 322.856 208.108 268.833 1 51.43 0 O1P FMN 501 F 1 HETATM 30 O O2P FMN . . . BA 28 320.738 208.153 270.221 1 51.43 -1 O2P FMN 501 F 1 HETATM 31 O O3P FMN . . . BA 28 322.883 207.228 271.206 1 51.43 0 O3P FMN 501 F 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #