data_8XNY # _model_server_result.job_id j_PEFxx_tOAlCcsuiwY4Cg _model_server_result.datetime_utc '2024-12-22 09:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":202}' # _entry.id 8XNY # _exptl.entry_id 8XNY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 24 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 24 X N N ? 24 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 Q SG CYS 36 X CYS 36 1_555 Q SG CYS 66 X CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 Q SG CYS 78 X CYS 78 1_555 Q SG CYS 110 X CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 B SG CYS 164 B CYS 164 1_555 Z FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 B O CYS 194 B CYS 194 1_555 Z FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc3 E SG CYS 139 E CYS 139 1_555 CA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc4 E SG CYS 175 E CYS 175 1_555 CA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc5 E SG CYS 179 E CYS 179 1_555 CA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 F SG CYS 385 F CYS 385 1_555 EA FE2 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc7 G O PHE 63 G PHE 63 1_555 HA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc8 G SG CYS 64 G CYS 64 1_555 HA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc9 G SG CYS 78 G CYS 78 1_555 HA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc10 G SG CYS 92 G CYS 92 1_555 HA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc11 G NE2 HIS 124 G HIS 124 1_555 FA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc12 G SG CYS 128 G CYS 128 1_555 FA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc13 G SG CYS 137 G CYS 137 1_555 FA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc14 I SG CYS 116 I CYS 116 1_555 JA FE4 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc15 I SG CYS 158 I CYS 158 1_555 IA FE4 SF4 . I SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc16 I SG CYS 162 I CYS 162 1_555 JA FE2 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc17 L SG CYS 79 R CYS 79 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc18 L NE2 HIS 88 R HIS 88 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc19 L SG CYS 104 R CYS 104 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc20 L SG CYS 107 R CYS 107 1_555 LA ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 8XNY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 3PE A 1 201 201 3PE 3PE . Y 24 3PE A 1 202 401 3PE 3PE . Z 25 SF4 B 1 301 236 SF4 SF4 . AA 26 PC1 B 1 302 406 PC1 PC1 . BA 26 PC1 B 1 303 436 PC1 PC1 . CA 27 FES E 1 301 332 FES FES . DA 28 FMN F 1 501 521 FMN FMN . EA 25 SF4 F 1 502 522 SF4 SF4 . FA 25 SF4 G 1 801 824 SF4 SF4 . GA 25 SF4 G 1 802 825 SF4 SF4 . HA 27 FES G 1 803 826 FES FES . IA 25 SF4 I 1 301 235 SF4 SF4 . JA 25 SF4 I 1 302 236 SF4 SF4 . KA 29 NDP P 1 401 536 NDP NDP . LA 30 ZN R 1 201 221 ZN ZN . MA 31 EHZ W 1 201 201 EHZ EHZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . Y 24 243.373 201.361 151.061 1 38.98 0 P 3PE 202 A 1 HETATM 2 N N 3PE . . . Y 24 243.865 200.419 148.089 1 38.98 0 N 3PE 202 A 1 HETATM 3 O O11 3PE . . . Y 24 242.219 200.589 151.856 1 38.98 0 O11 3PE 202 A 1 HETATM 4 O O12 3PE . . . Y 24 242.81 201.866 149.761 1 38.98 -1 O12 3PE 202 A 1 HETATM 5 O O13 3PE . . . Y 24 244.385 200.161 150.748 1 38.98 0 O13 3PE 202 A 1 HETATM 6 O O14 3PE . . . Y 24 244.038 202.318 152.013 1 38.98 0 O14 3PE 202 A 1 HETATM 7 C C11 3PE . . . Y 24 245.483 200.373 149.872 1 38.98 0 C11 3PE 202 A 1 HETATM 8 C C12 3PE . . . Y 24 245.131 199.789 148.517 1 38.98 0 C12 3PE 202 A 1 HETATM 9 C C1 3PE . . . Y 24 242.263 200.515 153.275 1 38.98 0 C1 3PE 202 A 1 HETATM 10 C C2 3PE . . . Y 24 243.169 199.369 153.691 1 38.98 0 C2 3PE 202 A 1 HETATM 11 C C3 3PE . . . Y 24 243.033 199.188 155.192 1 38.98 0 C3 3PE 202 A 1 HETATM 12 O O31 3PE . . . Y 24 243.643 200.285 155.856 1 38.98 0 O31 3PE 202 A 1 HETATM 13 O O32 3PE . . . Y 24 242.197 201.502 157.161 1 38.98 0 O32 3PE 202 A 1 HETATM 14 C C31 3PE . . . Y 24 243.122 200.714 157.14 1 38.98 0 C31 3PE 202 A 1 HETATM 15 C C32 3PE . . . Y 24 243.719 200.207 158.427 1 38.98 0 C32 3PE 202 A 1 HETATM 16 C C33 3PE . . . Y 24 242.916 200.797 159.58 1 38.98 0 C33 3PE 202 A 1 HETATM 17 C C34 3PE . . . Y 24 243.733 200.852 160.863 1 38.98 0 C34 3PE 202 A 1 HETATM 18 C C35 3PE . . . Y 24 244.079 199.464 161.382 1 38.98 0 C35 3PE 202 A 1 HETATM 19 C C36 3PE . . . Y 24 245.041 199.585 162.556 1 38.98 0 C36 3PE 202 A 1 HETATM 20 C C37 3PE . . . Y 24 245.131 198.276 163.325 1 38.98 0 C37 3PE 202 A 1 HETATM 21 C C38 3PE . . . Y 24 246.078 198.404 164.507 1 38.98 0 C38 3PE 202 A 1 HETATM 22 C C39 3PE . . . Y 24 245.871 197.244 165.467 1 38.98 0 C39 3PE 202 A 1 HETATM 23 C C3A 3PE . . . Y 24 244.399 197.144 165.843 1 38.98 0 C3A 3PE 202 A 1 HETATM 24 C C3B 3PE . . . Y 24 244.174 196.013 166.835 1 38.98 0 C3B 3PE 202 A 1 HETATM 25 C C3C 3PE . . . Y 24 244.835 196.353 168.162 1 38.98 0 C3C 3PE 202 A 1 HETATM 26 C C3D 3PE . . . Y 24 244.863 195.135 169.075 1 38.98 0 C3D 3PE 202 A 1 HETATM 27 C C3E 3PE . . . Y 24 243.464 194.659 169.432 1 38.98 0 C3E 3PE 202 A 1 HETATM 28 C C3F 3PE . . . Y 24 243.567 193.391 170.265 1 38.98 0 C3F 3PE 202 A 1 HETATM 29 C C3G 3PE . . . Y 24 244.453 193.618 171.482 1 38.98 0 C3G 3PE 202 A 1 HETATM 30 C C3H 3PE . . . Y 24 244.772 192.29 172.158 1 38.98 0 C3H 3PE 202 A 1 HETATM 31 C C3I 3PE . . . Y 24 243.502 191.552 172.51 1 38.98 0 C3I 3PE 202 A 1 HETATM 32 O O21 3PE . . . Y 24 242.787 198.172 153.016 1 38.98 0 O21 3PE 202 A 1 HETATM 33 O O22 3PE . . . Y 24 240.694 197.83 153.915 1 38.98 0 O22 3PE 202 A 1 HETATM 34 C C21 3PE . . . Y 24 241.81 197.375 153.739 1 38.98 0 C21 3PE 202 A 1 HETATM 35 C C22 3PE . . . Y 24 242.177 195.998 154.245 1 38.98 0 C22 3PE 202 A 1 HETATM 36 C C23 3PE . . . Y 24 240.977 195.349 154.922 1 38.98 0 C23 3PE 202 A 1 HETATM 37 C C24 3PE . . . Y 24 240.629 196.055 156.223 1 38.98 0 C24 3PE 202 A 1 HETATM 38 C C25 3PE . . . Y 24 241.7 195.842 157.282 1 38.98 0 C25 3PE 202 A 1 HETATM 39 C C26 3PE . . . Y 24 241.579 196.91 158.361 1 38.98 0 C26 3PE 202 A 1 HETATM 40 C C27 3PE . . . Y 24 242.341 196.516 159.617 1 38.98 0 C27 3PE 202 A 1 HETATM 41 C C28 3PE . . . Y 24 241.776 195.214 160.154 1 38.98 0 C28 3PE 202 A 1 HETATM 42 C C29 3PE . . . Y 24 242.284 194.887 161.549 1 38.98 0 C29 3PE 202 A 1 HETATM 43 C C2A 3PE . . . Y 24 241.675 193.562 161.981 1 38.98 0 C2A 3PE 202 A 1 HETATM 44 C C2B 3PE . . . Y 24 242.109 193.138 163.376 1 38.98 0 C2B 3PE 202 A 1 HETATM 45 C C2C 3PE . . . Y 24 241.573 191.74 163.648 1 38.98 0 C2C 3PE 202 A 1 HETATM 46 C C2D 3PE . . . Y 24 242.146 190.75 162.644 1 38.98 0 C2D 3PE 202 A 1 HETATM 47 C C2E 3PE . . . Y 24 241.107 189.7 162.268 1 38.98 0 C2E 3PE 202 A 1 HETATM 48 C C2F 3PE . . . Y 24 240.405 189.175 163.512 1 38.98 0 C2F 3PE 202 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #