data_8XO0 # _model_server_result.job_id JwxyzLDRk1bMTSPtwJYRJA _model_server_result.datetime_utc '2024-11-05 08:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":301}' # _entry.id 8XO0 # _exptl.entry_id 8XO0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 Y N N ? 25 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 24 S CYS 24 1_555 M SG CYS 58 S CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 Q SG CYS 46 X CYS 46 1_555 Q SG CYS 56 X CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 Q SG CYS 88 X CYS 88 1_555 Q SG CYS 100 X CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B SG CYS 99 B CYS 99 1_555 X FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc2 B SG CYS 100 B CYS 100 1_555 X FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc3 B SG CYS 194 B CYS 194 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 E SG CYS 134 E CYS 134 1_555 Z FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc5 E SG CYS 139 E CYS 139 1_555 Z FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 F SG CYS 385 F CYS 385 1_555 BA FE3 SF4 . F SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc7 G SG CYS 75 G CYS 75 1_555 EA FE1 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc8 G SG CYS 92 G CYS 92 1_555 EA FE2 FES . G FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc9 G NE2 HIS 124 G HIS 124 1_555 CA FE1 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc10 G SG CYS 128 G CYS 128 1_555 CA FE3 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 G SG CYS 137 G CYS 137 1_555 CA FE4 SF4 . G SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc12 G SG CYS 179 G CYS 179 1_555 DA FE3 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc13 G SG CYS 182 G CYS 182 1_555 DA FE2 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc14 G SG CYS 226 G CYS 226 1_555 DA FE1 SF4 . G SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc15 I SG CYS 116 I CYS 116 1_555 IA FE1 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc16 I SG CYS 119 I CYS 119 1_555 IA FE2 SF4 . I SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc17 I SG CYS 123 I CYS 123 1_555 HA FE1 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc18 I SG CYS 152 I CYS 152 1_555 HA FE2 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc19 I SG CYS 155 I CYS 155 1_555 HA FE4 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc20 I SG CYS 158 I CYS 158 1_555 HA FE3 SF4 . I SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 762 n n P O14 PC1 doub 763 n n P O13 PC1 sing 764 n n P O11 PC1 sing 765 n n O13 C11 PC1 sing 766 n n C11 C12 PC1 sing 767 n n C11 H111 PC1 sing 768 n n C11 H112 PC1 sing 769 n n C12 N PC1 sing 770 n n C12 H121 PC1 sing 771 n n C12 H122 PC1 sing 772 n n N C13 PC1 sing 773 n n N C14 PC1 sing 774 n n N C15 PC1 sing 775 n n C13 H131 PC1 sing 776 n n C13 H132 PC1 sing 777 n n C13 H133 PC1 sing 778 n n C14 H141 PC1 sing 779 n n C14 H142 PC1 sing 780 n n C14 H143 PC1 sing 781 n n C15 H151 PC1 sing 782 n n C15 H152 PC1 sing 783 n n C15 H153 PC1 sing 784 n n O11 C1 PC1 sing 785 n n C1 C2 PC1 sing 786 n n C1 H11 PC1 sing 787 n n C1 H12 PC1 sing 788 n n C2 O21 PC1 sing 789 n n C2 C3 PC1 sing 790 n n C2 H2 PC1 sing 791 n n O21 C21 PC1 sing 792 n n C21 O22 PC1 doub 793 n n C21 C22 PC1 sing 794 n n C22 C23 PC1 sing 795 n n C22 H221 PC1 sing 796 n n C22 H222 PC1 sing 797 n n C23 C24 PC1 sing 798 n n C23 H231 PC1 sing 799 n n C23 H232 PC1 sing 800 n n C24 C25 PC1 sing 801 n n C24 H241 PC1 sing 802 n n C24 H242 PC1 sing 803 n n C25 C26 PC1 sing 804 n n C25 H251 PC1 sing 805 n n C25 H252 PC1 sing 806 n n C26 C27 PC1 sing 807 n n C26 H261 PC1 sing 808 n n C26 H262 PC1 sing 809 n n C27 C28 PC1 sing 810 n n C27 H271 PC1 sing 811 n n C27 H272 PC1 sing 812 n n C28 C29 PC1 sing 813 n n C28 H281 PC1 sing 814 n n C28 H282 PC1 sing 815 n n C29 C2A PC1 sing 816 n n C29 H291 PC1 sing 817 n n C29 H292 PC1 sing 818 n n C2A C2B PC1 sing 819 n n C2A H2A1 PC1 sing 820 n n C2A H2A2 PC1 sing 821 n n C2B C2C PC1 sing 822 n n C2B H2B1 PC1 sing 823 n n C2B H2B2 PC1 sing 824 n n C2C C2D PC1 sing 825 n n C2C H2C1 PC1 sing 826 n n C2C H2C2 PC1 sing 827 n n C2D C2E PC1 sing 828 n n C2D H2D1 PC1 sing 829 n n C2D H2D2 PC1 sing 830 n n C2E C2F PC1 sing 831 n n C2E H2E1 PC1 sing 832 n n C2E H2E2 PC1 sing 833 n n C2F C2G PC1 sing 834 n n C2F H2F1 PC1 sing 835 n n C2F H2F2 PC1 sing 836 n n C2G C2H PC1 sing 837 n n C2G H2G1 PC1 sing 838 n n C2G H2G2 PC1 sing 839 n n C2H C2I PC1 sing 840 n n C2H H2H1 PC1 sing 841 n n C2H H2H2 PC1 sing 842 n n C2I H2I1 PC1 sing 843 n n C2I H2I2 PC1 sing 844 n n C2I H2I3 PC1 sing 845 n n C3 O31 PC1 sing 846 n n C3 H31 PC1 sing 847 n n C3 H32 PC1 sing 848 n n O31 C31 PC1 sing 849 n n C31 O32 PC1 doub 850 n n C31 C32 PC1 sing 851 n n C32 C33 PC1 sing 852 n n C32 H321 PC1 sing 853 n n C32 H322 PC1 sing 854 n n C33 C34 PC1 sing 855 n n C33 H331 PC1 sing 856 n n C33 H332 PC1 sing 857 n n C34 C35 PC1 sing 858 n n C34 H341 PC1 sing 859 n n C34 H342 PC1 sing 860 n n C35 C36 PC1 sing 861 n n C35 H351 PC1 sing 862 n n C35 H352 PC1 sing 863 n n C36 C37 PC1 sing 864 n n C36 H361 PC1 sing 865 n n C36 H362 PC1 sing 866 n n C37 C38 PC1 sing 867 n n C37 H371 PC1 sing 868 n n C37 H372 PC1 sing 869 n n C38 C39 PC1 sing 870 n n C38 H381 PC1 sing 871 n n C38 H382 PC1 sing 872 n n C39 C3A PC1 sing 873 n n C39 H391 PC1 sing 874 n n C39 H392 PC1 sing 875 n n C3A C3B PC1 sing 876 n n C3A H3A1 PC1 sing 877 n n C3A H3A2 PC1 sing 878 n n C3B C3C PC1 sing 879 n n C3B H3B1 PC1 sing 880 n n C3B H3B2 PC1 sing 881 n n C3C C3D PC1 sing 882 n n C3C H3C1 PC1 sing 883 n n C3C H3C2 PC1 sing 884 n n C3D C3E PC1 sing 885 n n C3D H3D1 PC1 sing 886 n n C3D H3D2 PC1 sing 887 n n C3E C3F PC1 sing 888 n n C3E H3E1 PC1 sing 889 n n C3E H3E2 PC1 sing 890 n n C3F C3G PC1 sing 891 n n C3F H3F1 PC1 sing 892 n n C3F H3F2 PC1 sing 893 n n C3G C3H PC1 sing 894 n n C3G H3G1 PC1 sing 895 n n C3G H3G2 PC1 sing 896 n n C3H C3I PC1 sing 897 n n C3H H3H1 PC1 sing 898 n n C3H H3H2 PC1 sing 899 n n C3I H3I1 PC1 sing 900 n n C3I H3I2 PC1 sing 901 n n C3I H3I3 PC1 sing 902 n n # _atom_sites.entry_id 8XO0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 24 SF4 B 1 301 236 SF4 SF4 . Y 25 PC1 B 1 302 406 PC1 PC1 . Z 26 FES E 1 301 332 FES FES . AA 27 FMN F 1 501 521 FMN FMN . BA 24 SF4 F 1 502 522 SF4 SF4 . CA 24 SF4 G 1 801 824 SF4 SF4 . DA 24 SF4 G 1 802 825 SF4 SF4 . EA 26 FES G 1 803 826 FES FES . FA 28 3PE H 1 401 403 3PE 3PE . GA 25 PC1 I 1 301 404 PC1 PC1 . HA 24 SF4 I 1 302 235 SF4 SF4 . IA 24 SF4 I 1 303 236 SF4 SF4 . JA 29 NDP P 1 401 536 NDP NDP . KA 30 CDL q 1 201 405 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . GA 25 278.777 224.801 173.46 1 40.66 -1 O12 PC1 301 I 1 HETATM 2 P P PC1 . . . GA 25 279.619 224.988 172.222 1 40.66 0 P PC1 301 I 1 HETATM 3 O O14 PC1 . . . GA 25 281.091 225.298 172.34 1 40.66 0 O14 PC1 301 I 1 HETATM 4 O O13 PC1 . . . GA 25 278.933 226.14 171.331 1 40.66 0 O13 PC1 301 I 1 HETATM 5 C C11 PC1 . . . GA 25 279.396 226.423 170.012 1 40.66 0 C11 PC1 301 I 1 HETATM 6 C C12 PC1 . . . GA 25 278.544 227.527 169.394 1 40.66 0 C12 PC1 301 I 1 HETATM 7 N N PC1 . . . GA 25 278.844 228.828 170.007 1 40.66 0 N PC1 301 I 1 HETATM 8 C C13 PC1 . . . GA 25 278.629 229.891 169.017 1 40.66 0 C13 PC1 301 I 1 HETATM 9 C C14 PC1 . . . GA 25 277.955 229.055 171.154 1 40.66 0 C14 PC1 301 I 1 HETATM 10 C C15 PC1 . . . GA 25 280.245 228.862 170.446 1 40.66 0 C15 PC1 301 I 1 HETATM 11 O O11 PC1 . . . GA 25 279.449 223.676 171.307 1 40.66 0 O11 PC1 301 I 1 HETATM 12 C C1 PC1 . . . GA 25 279.975 222.421 171.74 1 40.66 0 C1 PC1 301 I 1 HETATM 13 C C2 PC1 . . . GA 25 280.16 221.498 170.542 1 40.66 0 C2 PC1 301 I 1 HETATM 14 O O21 PC1 . . . GA 25 278.91 221.328 169.879 1 40.66 0 O21 PC1 301 I 1 HETATM 15 C C21 PC1 . . . GA 25 278.892 222.026 168.604 1 40.66 0 C21 PC1 301 I 1 HETATM 16 O O22 PC1 . . . GA 25 279.67 221.693 167.729 1 40.66 0 O22 PC1 301 I 1 HETATM 17 C C22 PC1 . . . GA 25 277.91 223.146 168.375 1 40.66 0 C22 PC1 301 I 1 HETATM 18 C C23 PC1 . . . GA 25 276.496 222.586 168.292 1 40.66 0 C23 PC1 301 I 1 HETATM 19 C C24 PC1 . . . GA 25 276.232 221.971 166.925 1 40.66 0 C24 PC1 301 I 1 HETATM 20 C C25 PC1 . . . GA 25 274.782 221.521 166.804 1 40.66 0 C25 PC1 301 I 1 HETATM 21 C C26 PC1 . . . GA 25 274.474 221.094 165.376 1 40.66 0 C26 PC1 301 I 1 HETATM 22 C C27 PC1 . . . GA 25 273.124 220.397 165.284 1 40.66 0 C27 PC1 301 I 1 HETATM 23 C C28 PC1 . . . GA 25 272.926 219.832 163.882 1 40.66 0 C28 PC1 301 I 1 HETATM 24 C C29 PC1 . . . GA 25 271.904 218.701 163.877 1 40.66 0 C29 PC1 301 I 1 HETATM 25 C C2A PC1 . . . GA 25 272.028 217.89 162.594 1 40.66 0 C2A PC1 301 I 1 HETATM 26 C C2B PC1 . . . GA 25 271.373 216.523 162.746 1 40.66 0 C2B PC1 301 I 1 HETATM 27 C C2C PC1 . . . GA 25 271.905 215.556 161.694 1 40.66 0 C2C PC1 301 I 1 HETATM 28 C C2D PC1 . . . GA 25 271.423 214.134 161.958 1 40.66 0 C2D PC1 301 I 1 HETATM 29 C C2E PC1 . . . GA 25 272.059 213.147 160.986 1 40.66 0 C2E PC1 301 I 1 HETATM 30 C C3 PC1 . . . GA 25 280.669 220.145 171.022 1 40.66 0 C3 PC1 301 I 1 HETATM 31 O O31 PC1 . . . GA 25 280.775 219.264 169.904 1 40.66 0 O31 PC1 301 I 1 HETATM 32 C C31 PC1 . . . GA 25 281.296 217.92 170.078 1 40.66 0 C31 PC1 301 I 1 HETATM 33 O O32 PC1 . . . GA 25 282.311 217.748 170.734 1 40.66 0 O32 PC1 301 I 1 HETATM 34 C C32 PC1 . . . GA 25 280.579 216.751 169.445 1 40.66 0 C32 PC1 301 I 1 HETATM 35 C C33 PC1 . . . GA 25 281.341 215.465 169.735 1 40.66 0 C33 PC1 301 I 1 HETATM 36 C C34 PC1 . . . GA 25 280.629 214.237 169.18 1 40.66 0 C34 PC1 301 I 1 HETATM 37 C C35 PC1 . . . GA 25 279.509 213.746 170.088 1 40.66 0 C35 PC1 301 I 1 HETATM 38 C C36 PC1 . . . GA 25 278.233 214.573 169.965 1 40.66 0 C36 PC1 301 I 1 HETATM 39 C C37 PC1 . . . GA 25 277.691 214.532 168.544 1 40.66 0 C37 PC1 301 I 1 HETATM 40 C C38 PC1 . . . GA 25 276.363 215.275 168.455 1 40.66 0 C38 PC1 301 I 1 HETATM 41 C C39 PC1 . . . GA 25 275.895 215.411 167.011 1 40.66 0 C39 PC1 301 I 1 HETATM 42 C C3A PC1 . . . GA 25 275.507 214.058 166.43 1 40.66 0 C3A PC1 301 I 1 HETATM 43 C C3B PC1 . . . GA 25 274.331 213.454 167.189 1 40.66 0 C3B PC1 301 I 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #