data_8XOK
#
_model_server_result.job_id            bT2oLj2XeoXutaPLyrxPMg 
_model_server_result.datetime_utc      '2025-09-04 15:15:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xok 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1403}' 
#
_entry.id    8XOK 
#
_exptl.entry_id    8XOK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              516.752 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol" 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XOK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XOK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
#
_chem_comp.formula           'C32 H52 O5' 
_chem_comp.formula_weight    516.752 
_chem_comp.id                DU0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C12 DU0 sing 83 n n 
C12 C11 DU0 sing 84 n n 
C12 C14 DU0 sing 85 n n 
C11 O10 DU0 sing 86 n n 
C14 C15 DU0 sing 87 n n 
O10 C09 DU0 sing 88 n n 
C15 C09 DU0 sing 89 n n 
C09 O16 DU0 sing 90 n n 
C09 C07 DU0 sing 91 n n 
C08 C07 DU0 sing 92 n n 
O16 C05 DU0 sing 93 n n 
C07 C06 DU0 sing 94 n n 
C05 C06 DU0 sing 95 n n 
C05 C04 DU0 sing 96 n n 
C06 C02 DU0 sing 97 n n 
C04 C03 DU0 sing 98 n n 
C02 C01 DU0 sing 99 n n 
C02 C03 DU0 sing 100 n n 
C02 C81 DU0 sing 101 n n 
C03 C17 DU0 sing 102 n n 
C81 C80 DU0 sing 103 n n 
C17 C18 DU0 sing 104 n n 
C17 C79 DU0 sing 105 n n 
C80 C79 DU0 sing 106 n n 
C18 C19 DU0 sing 107 n n 
C79 C77 DU0 sing 108 n n 
C19 C20 DU0 doub 109 n n 
C77 C20 DU0 sing 110 n n 
C77 C78 DU0 sing 111 n n 
C77 C76 DU0 sing 112 n n 
C20 C21 DU0 sing 113 n n 
C76 C75 DU0 sing 114 n n 
C21 C22 DU0 sing 115 n n 
C75 C22 DU0 sing 116 n n 
C22 O23 DU0 sing 117 n n 
O23 C24 DU0 sing 118 n n 
C24 C25 DU0 sing 119 n n 
C25 C26 DU0 sing 120 n n 
C26 C27 DU0 sing 121 n n 
C26 C51 DU0 sing 122 n n 
C27 O28 DU0 sing 123 n n 
C51 O52 DU0 sing 124 n n 
C13 H1 DU0 sing 125 n n 
C13 H2 DU0 sing 126 n n 
C13 H3 DU0 sing 127 n n 
C15 H4 DU0 sing 128 n n 
C15 H5 DU0 sing 129 n n 
C17 H6 DU0 sing 130 n n 
C21 H7 DU0 sing 131 n n 
C21 H8 DU0 sing 132 n n 
C22 H9 DU0 sing 133 n n 
C24 H10 DU0 sing 134 n n 
C24 H11 DU0 sing 135 n n 
C26 H12 DU0 sing 136 n n 
C01 H13 DU0 sing 137 n n 
C01 H14 DU0 sing 138 n n 
C01 H15 DU0 sing 139 n n 
C03 H16 DU0 sing 140 n n 
C04 H17 DU0 sing 141 n n 
C04 H18 DU0 sing 142 n n 
C05 H19 DU0 sing 143 n n 
C06 H20 DU0 sing 144 n n 
C07 H21 DU0 sing 145 n n 
C08 H22 DU0 sing 146 n n 
C08 H23 DU0 sing 147 n n 
C08 H24 DU0 sing 148 n n 
C11 H25 DU0 sing 149 n n 
C11 H26 DU0 sing 150 n n 
C12 H27 DU0 sing 151 n n 
C14 H28 DU0 sing 152 n n 
C14 H29 DU0 sing 153 n n 
C18 H30 DU0 sing 154 n n 
C18 H31 DU0 sing 155 n n 
C19 H32 DU0 sing 156 n n 
C25 H33 DU0 sing 157 n n 
C25 H34 DU0 sing 158 n n 
C27 H35 DU0 sing 159 n n 
C27 H36 DU0 sing 160 n n 
C51 H37 DU0 sing 161 n n 
C51 H38 DU0 sing 162 n n 
C75 H39 DU0 sing 163 n n 
C75 H40 DU0 sing 164 n n 
C76 H41 DU0 sing 165 n n 
C76 H42 DU0 sing 166 n n 
C78 H43 DU0 sing 167 n n 
C78 H44 DU0 sing 168 n n 
C78 H45 DU0 sing 169 n n 
C79 H46 DU0 sing 170 n n 
C80 H47 DU0 sing 171 n n 
C80 H48 DU0 sing 172 n n 
C81 H49 DU0 sing 173 n n 
C81 H50 DU0 sing 174 n n 
O28 H51 DU0 sing 175 n n 
O52 H52 DU0 sing 176 n n 
#
_atom_sites.entry_id                     8XOK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DU0 A 1 1401 1 DU0 DU0 . 
C 2 DU0 A 1 1402 2 DU0 DU0 . 
D 2 DU0 A 1 1403 3 DU0 DU0 . 
E 2 DU0 A 1 1404 4 DU0 DU0 . 
F 2 DU0 A 1 1405 5 DU0 DU0 . 
G 2 DU0 A 1 1406 6 DU0 DU0 . 
H 2 DU0 A 1 1407 7 DU0 DU0 . 
I 2 DU0 A 1 1408 8 DU0 DU0 . 
J 2 DU0 A 1 1409 9 DU0 DU0 . 
K 2 DU0 A 1 1410 10 DU0 DU0 . 
L 2 DU0 A 1 1411 11 DU0 DU0 . 
M 2 DU0 A 1 1412 12 DU0 DU0 . 
N 2 DU0 A 1 1413 13 DU0 DU0 . 
O 2 DU0 A 1 1414 14 DU0 DU0 . 
P 3 PLM A 1 1415 15 PLM PLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 DU0 . . . D 2 81.158 90.056 121.939 1 141.4 ? C13 DU0 1403 A 1 
HETATM 2 C C15 DU0 . . . D 2 84.299 89.229 124.04 1 143.88 ? C15 DU0 1403 A 1 
HETATM 3 C C17 DU0 . . . D 2 83.884 88.129 130.667 1 152.4 ? C17 DU0 1403 A 1 
HETATM 4 C C20 DU0 . . . D 2 83.99 87.361 133.465 1 163.16 ? C20 DU0 1403 A 1 
HETATM 5 C C21 DU0 . . . D 2 84.095 86.8 134.862 1 170.1 ? C21 DU0 1403 A 1 
HETATM 6 C C22 DU0 . . . D 2 84.937 87.691 135.774 1 173.54 ? C22 DU0 1403 A 1 
HETATM 7 C C24 DU0 . . . D 2 85.188 85.738 137.118 1 183.13 ? C24 DU0 1403 A 1 
HETATM 8 C C26 DU0 . . . D 2 83.791 84.63 138.988 1 195.19 ? C26 DU0 1403 A 1 
HETATM 9 C C01 DU0 . . . D 2 85.565 88.158 128.097 1 146.46 ? C01 DU0 1403 A 1 
HETATM 10 C C02 DU0 . . . D 2 84.93 89.413 128.703 1 142.45 ? C02 DU0 1403 A 1 
HETATM 11 C C03 DU0 . . . D 2 83.662 89.083 129.504 1 148.52 ? C03 DU0 1403 A 1 
HETATM 12 C C04 DU0 . . . D 2 82.643 88.726 128.425 1 145.79 ? C04 DU0 1403 A 1 
HETATM 13 C C05 DU0 . . . D 2 82.942 89.767 127.341 1 142.48 ? C05 DU0 1403 A 1 
HETATM 14 C C06 DU0 . . . D 2 84.353 90.338 127.612 1 138.53 ? C06 DU0 1403 A 1 
HETATM 15 C C07 DU0 . . . D 2 85.018 90.372 126.228 1 137.62 ? C07 DU0 1403 A 1 
HETATM 16 C C08 DU0 . . . D 2 85.767 91.655 125.892 1 129.26 ? C08 DU0 1403 A 1 
HETATM 17 C C09 DU0 . . . D 2 83.863 90.007 125.271 1 144.72 ? C09 DU0 1403 A 1 
HETATM 18 C C11 DU0 . . . D 2 82.081 91.02 124.049 1 135.55 ? C11 DU0 1403 A 1 
HETATM 19 C C12 DU0 . . . D 2 82.419 90.293 122.757 1 136.18 ? C12 DU0 1403 A 1 
HETATM 20 C C14 DU0 . . . D 2 83.139 88.989 123.082 1 141.41 ? C14 DU0 1403 A 1 
HETATM 21 C C18 DU0 . . . D 2 82.595 87.894 131.447 1 154.45 ? C18 DU0 1403 A 1 
HETATM 22 C C19 DU0 . . . D 2 82.823 87.349 132.821 1 160.22 ? C19 DU0 1403 A 1 
HETATM 23 C C25 DU0 . . . D 2 85.094 85.333 138.58 1 189.46 ? C25 DU0 1403 A 1 
HETATM 24 C C27 DU0 . . . D 2 82.794 85.644 139.539 1 193.93 ? C27 DU0 1403 A 1 
HETATM 25 C C51 DU0 . . . D 2 83.263 83.834 137.797 1 194.61 ? C51 DU0 1403 A 1 
HETATM 26 C C75 DU0 . . . D 2 86.301 87.896 135.147 1 165.49 ? C75 DU0 1403 A 1 
HETATM 27 C C76 DU0 . . . D 2 86.158 88.555 133.785 1 157.31 ? C76 DU0 1403 A 1 
HETATM 28 C C77 DU0 . . . D 2 85.281 87.776 132.784 1 158.72 ? C77 DU0 1403 A 1 
HETATM 29 C C78 DU0 . . . D 2 86.017 86.511 132.32 1 157.57 ? C78 DU0 1403 A 1 
HETATM 30 C C79 DU0 . . . D 2 84.955 88.716 131.598 1 150.72 ? C79 DU0 1403 A 1 
HETATM 31 C C80 DU0 . . . D 2 86.209 89.153 130.837 1 141.85 ? C80 DU0 1403 A 1 
HETATM 32 C C81 DU0 . . . D 2 85.907 90.08 129.66 1 136.2 ? C81 DU0 1403 A 1 
HETATM 33 O O10 DU0 . . . D 2 83.208 91.192 124.891 1 138.29 ? O10 DU0 1403 A 1 
HETATM 34 O O16 DU0 . . . D 2 83.008 89.203 126.04 1 146.06 ? O16 DU0 1403 A 1 
HETATM 35 O O23 DU0 . . . D 2 85.131 87.144 137.061 1 181.26 ? O23 DU0 1403 A 1 
HETATM 36 O O28 DU0 . . . D 2 82.54 86.682 138.622 1 192.14 ? O28 DU0 1403 A 1 
HETATM 37 O O52 DU0 . . . D 2 81.898 84.097 137.565 1 196.58 ? O52 DU0 1403 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           37 
#