data_8XOL # _model_server_result.job_id 4DnMzG071aNwy9Mb6p9JsA _model_server_result.datetime_utc '2024-12-22 03:45:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 8XOL # _exptl.entry_id 8XOL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XOL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2B ANP . A ANP 1401 1_555 L MG MG . A MG 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 B O2A ANP . A ANP 1401 1_555 L MG MG . A MG 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc3 B O3A ANP . A ANP 1401 1_555 L MG MG . A MG 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8XOL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 1401 1401 ANP ANP . C 3 DU0 A 1 1402 5 DU0 DU0 . D 3 DU0 A 1 1403 6 DU0 DU0 . E 3 DU0 A 1 1404 7 DU0 DU0 . F 3 DU0 A 1 1405 8 DU0 DU0 . G 3 DU0 A 1 1406 10 DU0 DU0 . H 3 DU0 A 1 1407 11 DU0 DU0 . I 3 DU0 A 1 1408 13 DU0 DU0 . J 3 DU0 A 1 1409 14 DU0 DU0 . K 4 PLM A 1 1410 15 PLM PLM . L 5 MG A 1 1411 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 102.549 96.858 53.047 1 290.35 ? PG ANP 1401 A 1 HETATM 2 O O1G ANP . . . B 2 101.859 97.994 52.294 1 282.5 ? O1G ANP 1401 A 1 HETATM 3 O O2G ANP . . . B 2 103.669 96.18 52.256 1 277.36 ? O2G ANP 1401 A 1 HETATM 4 O O3G ANP . . . B 2 102.919 97.198 54.491 1 290.49 ? O3G ANP 1401 A 1 HETATM 5 P PB ANP . . . B 2 100.987 94.656 54.604 1 281.43 ? PB ANP 1401 A 1 HETATM 6 O O1B ANP . . . B 2 101.631 95.207 55.841 1 280.35 ? O1B ANP 1401 A 1 HETATM 7 O O2B ANP . . . B 2 101.091 93.185 54.292 1 267.01 ? O2B ANP 1401 A 1 HETATM 8 N N3B ANP . . . B 2 101.28 95.607 53.266 1 279.32 ? N3B ANP 1401 A 1 HETATM 9 P PA ANP . . . B 2 98.186 94.677 53.751 1 278.25 ? PA ANP 1401 A 1 HETATM 10 O O1A ANP . . . B 2 98.02 95.813 52.797 1 272.52 ? O1A ANP 1401 A 1 HETATM 11 O O2A ANP . . . B 2 98.309 93.256 53.234 1 266.14 ? O2A ANP 1401 A 1 HETATM 12 O O3A ANP . . . B 2 99.333 94.949 54.847 1 283.27 ? O3A ANP 1401 A 1 HETATM 13 O O5' ANP . . . B 2 96.887 94.767 54.768 1 275.12 ? O5' ANP 1401 A 1 HETATM 14 C C5' ANP . . . B 2 96.563 93.676 55.594 1 271.31 ? C5' ANP 1401 A 1 HETATM 15 C C4' ANP . . . B 2 95.238 93.043 55.225 1 270.38 ? C4' ANP 1401 A 1 HETATM 16 O O4' ANP . . . B 2 95.2 91.664 55.611 1 271.43 ? O4' ANP 1401 A 1 HETATM 17 C C3' ANP . . . B 2 94.011 93.683 55.886 1 267.92 ? C3' ANP 1401 A 1 HETATM 18 O O3' ANP . . . B 2 93.45 94.72 55.158 1 266.04 ? O3' ANP 1401 A 1 HETATM 19 C C2' ANP . . . B 2 93.105 92.487 56.12 1 269.71 ? C2' ANP 1401 A 1 HETATM 20 O O2' ANP . . . B 2 92.491 92.128 54.916 1 273.48 ? O2' ANP 1401 A 1 HETATM 21 C C1' ANP . . . B 2 94.171 91.452 56.522 1 267.6 ? C1' ANP 1401 A 1 HETATM 22 N N9 ANP . . . B 2 94.732 91.627 57.862 1 262.41 ? N9 ANP 1401 A 1 HETATM 23 C C8 ANP . . . B 2 96.046 91.482 58.214 1 259.61 ? C8 ANP 1401 A 1 HETATM 24 N N7 ANP . . . B 2 96.28 91.693 59.473 1 252.99 ? N7 ANP 1401 A 1 HETATM 25 C C5 ANP . . . B 2 95.053 91.991 59.993 1 254.7 ? C5 ANP 1401 A 1 HETATM 26 C C6 ANP . . . B 2 94.631 92.316 61.289 1 253.41 ? C6 ANP 1401 A 1 HETATM 27 N N6 ANP . . . B 2 95.48 92.38 62.323 1 249.92 ? N6 ANP 1401 A 1 HETATM 28 N N1 ANP . . . B 2 93.334 92.559 61.491 1 257.83 ? N1 ANP 1401 A 1 HETATM 29 C C2 ANP . . . B 2 92.498 92.493 60.459 1 260.12 ? C2 ANP 1401 A 1 HETATM 30 N N3 ANP . . . B 2 92.773 92.199 59.202 1 260.78 ? N3 ANP 1401 A 1 HETATM 31 C C4 ANP . . . B 2 94.071 91.956 59.013 1 259.55 ? C4 ANP 1401 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 516 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #