data_8XOX # _model_server_result.job_id c7pY0lC_A0cV0S9UswigtQ _model_server_result.datetime_utc '2024-12-22 23:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8XOX # _exptl.entry_id 8XOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-N-{3-[({2-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]-5-(trifluoromethyl)pyrimidin-4-yl}amino)methyl]pyridin-2-yl}methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.033 _cell.angle_gamma 90 _cell.entry_id 8XOX _cell.length_a 37.797 _cell.length_b 59.132 _cell.length_c 67.295 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 F3 N7 O3 S' _chem_comp.formula_weight 507.489 _chem_comp.id YAM _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-N-{3-[({2-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]-5-(trifluoromethyl)pyrimidin-4-yl}amino)methyl]pyridin-2-yl}methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N30 C35 YAM sing 385 n n C35 H35 YAM sing 386 n n C35 H35A YAM sing 387 n n C35 H35B YAM sing 388 n n S31 C34 YAM sing 389 n n C34 H34 YAM sing 390 n n C34 H34A YAM sing 391 n n C34 H34B YAM sing 392 n n C3 N2 YAM doub 393 n y N2 C7 YAM sing 394 n y C7 C6 YAM doub 395 n y C7 H7 YAM sing 396 n n C5 C6 YAM sing 397 n y C6 C8 YAM sing 398 n n C17 C13 YAM doub 399 n y C13 C12 YAM sing 400 n n C13 C20 YAM sing 401 n y N1 C20 YAM doub 402 n y C20 N30 YAM sing 403 n n N25 C21 YAM sing 404 n n C22 C21 YAM doub 405 n y C21 C15 YAM sing 406 n y F28 C8 YAM sing 407 n n C8 F27 YAM sing 408 n n C8 F29 YAM sing 409 n n C18 C17 YAM sing 410 n y C18 C19 YAM doub 411 n y C18 H18 YAM sing 412 n n C15 C16 YAM doub 413 n y C11 C16 YAM sing 414 n y C16 H16 YAM sing 415 n n C19 N1 YAM sing 416 n y C19 H19 YAM sing 417 n n O33 S31 YAM doub 418 n n N30 S31 YAM sing 419 n n S31 O32 YAM doub 420 n n C17 H17 YAM sing 421 n n C12 N10 YAM sing 422 n n C12 H12 YAM sing 423 n n C12 H12A YAM sing 424 n n C5 N10 YAM sing 425 n n N10 HN10 YAM sing 426 n n N4 C5 YAM doub 427 n y N4 C3 YAM sing 428 n y N9 C3 YAM sing 429 n n C11 N9 YAM sing 430 n n N9 HN9 YAM sing 431 n n C14 C11 YAM doub 432 n y C22 C14 YAM sing 433 n y C14 H14 YAM sing 434 n n C23 C22 YAM sing 435 n n C24 C23 YAM sing 436 n n C23 H23 YAM sing 437 n n C23 H23A YAM sing 438 n n C15 H15 YAM sing 439 n n C24 N25 YAM sing 440 n n N25 HN25 YAM sing 441 n n O26 C24 YAM doub 442 n n # _atom_sites.entry_id 8XOX _atom_sites.fract_transf_matrix[1][1] 0.026457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YAM A 1 701 701 YAM Lig . C 3 EDO A 1 702 1 EDO EDO . D 3 EDO A 1 703 2 EDO EDO . E 3 EDO A 1 704 3 EDO EDO . F 4 HOH A 1 801 158 HOH HOH . F 4 HOH A 2 802 170 HOH HOH . F 4 HOH A 3 803 203 HOH HOH . F 4 HOH A 4 804 136 HOH HOH . F 4 HOH A 5 805 44 HOH HOH . F 4 HOH A 6 806 28 HOH HOH . F 4 HOH A 7 807 78 HOH HOH . F 4 HOH A 8 808 13 HOH HOH . F 4 HOH A 9 809 58 HOH HOH . F 4 HOH A 10 810 180 HOH HOH . F 4 HOH A 11 811 205 HOH HOH . F 4 HOH A 12 812 14 HOH HOH . F 4 HOH A 13 813 68 HOH HOH . F 4 HOH A 14 814 76 HOH HOH . F 4 HOH A 15 815 108 HOH HOH . F 4 HOH A 16 816 84 HOH HOH . F 4 HOH A 17 817 34 HOH HOH . F 4 HOH A 18 818 32 HOH HOH . F 4 HOH A 19 819 74 HOH HOH . F 4 HOH A 20 820 153 HOH HOH . F 4 HOH A 21 821 101 HOH HOH . F 4 HOH A 22 822 162 HOH HOH . F 4 HOH A 23 823 140 HOH HOH . F 4 HOH A 24 824 49 HOH HOH . F 4 HOH A 25 825 27 HOH HOH . F 4 HOH A 26 826 110 HOH HOH . F 4 HOH A 27 827 98 HOH HOH . F 4 HOH A 28 828 75 HOH HOH . F 4 HOH A 29 829 35 HOH HOH . F 4 HOH A 30 830 37 HOH HOH . F 4 HOH A 31 831 41 HOH HOH . F 4 HOH A 32 832 18 HOH HOH . F 4 HOH A 33 833 25 HOH HOH . F 4 HOH A 34 834 15 HOH HOH . F 4 HOH A 35 835 24 HOH HOH . F 4 HOH A 36 836 141 HOH HOH . F 4 HOH A 37 837 48 HOH HOH . F 4 HOH A 38 838 47 HOH HOH . F 4 HOH A 39 839 183 HOH HOH . F 4 HOH A 40 840 65 HOH HOH . F 4 HOH A 41 841 3 HOH HOH . F 4 HOH A 42 842 107 HOH HOH . F 4 HOH A 43 843 17 HOH HOH . F 4 HOH A 44 844 73 HOH HOH . F 4 HOH A 45 845 97 HOH HOH . F 4 HOH A 46 846 99 HOH HOH . F 4 HOH A 47 847 26 HOH HOH . F 4 HOH A 48 848 105 HOH HOH . F 4 HOH A 49 849 148 HOH HOH . F 4 HOH A 50 850 51 HOH HOH . F 4 HOH A 51 851 104 HOH HOH . F 4 HOH A 52 852 144 HOH HOH . F 4 HOH A 53 853 30 HOH HOH . F 4 HOH A 54 854 6 HOH HOH . F 4 HOH A 55 855 55 HOH HOH . F 4 HOH A 56 856 8 HOH HOH . F 4 HOH A 57 857 7 HOH HOH . F 4 HOH A 58 858 94 HOH HOH . F 4 HOH A 59 859 16 HOH HOH . F 4 HOH A 60 860 81 HOH HOH . F 4 HOH A 61 861 142 HOH HOH . F 4 HOH A 62 862 39 HOH HOH . F 4 HOH A 63 863 46 HOH HOH . F 4 HOH A 64 864 123 HOH HOH . F 4 HOH A 65 865 184 HOH HOH . F 4 HOH A 66 866 127 HOH HOH . F 4 HOH A 67 867 117 HOH HOH . F 4 HOH A 68 868 106 HOH HOH . F 4 HOH A 69 869 69 HOH HOH . F 4 HOH A 70 870 195 HOH HOH . F 4 HOH A 71 871 146 HOH HOH . F 4 HOH A 72 872 72 HOH HOH . F 4 HOH A 73 873 38 HOH HOH . F 4 HOH A 74 874 91 HOH HOH . F 4 HOH A 75 875 42 HOH HOH . F 4 HOH A 76 876 9 HOH HOH . F 4 HOH A 77 877 22 HOH HOH . F 4 HOH A 78 878 191 HOH HOH . F 4 HOH A 79 879 116 HOH HOH . F 4 HOH A 80 880 122 HOH HOH . F 4 HOH A 81 881 5 HOH HOH . F 4 HOH A 82 882 161 HOH HOH . F 4 HOH A 83 883 199 HOH HOH . F 4 HOH A 84 884 59 HOH HOH . F 4 HOH A 85 885 135 HOH HOH . F 4 HOH A 86 886 33 HOH HOH . F 4 HOH A 87 887 124 HOH HOH . F 4 HOH A 88 888 19 HOH HOH . F 4 HOH A 89 889 150 HOH HOH . F 4 HOH A 90 890 43 HOH HOH . F 4 HOH A 91 891 103 HOH HOH . F 4 HOH A 92 892 4 HOH HOH . F 4 HOH A 93 893 181 HOH HOH . F 4 HOH A 94 894 131 HOH HOH . F 4 HOH A 95 895 77 HOH HOH . F 4 HOH A 96 896 1 HOH HOH . F 4 HOH A 97 897 31 HOH HOH . F 4 HOH A 98 898 187 HOH HOH . F 4 HOH A 99 899 50 HOH HOH . F 4 HOH A 100 900 137 HOH HOH . F 4 HOH A 101 901 10 HOH HOH . F 4 HOH A 102 902 87 HOH HOH . F 4 HOH A 103 903 62 HOH HOH . F 4 HOH A 104 904 79 HOH HOH . F 4 HOH A 105 905 20 HOH HOH . F 4 HOH A 106 906 175 HOH HOH . F 4 HOH A 107 907 2 HOH HOH . F 4 HOH A 108 908 45 HOH HOH . F 4 HOH A 109 909 132 HOH HOH . F 4 HOH A 110 910 70 HOH HOH . F 4 HOH A 111 911 125 HOH HOH . F 4 HOH A 112 912 100 HOH HOH . F 4 HOH A 113 913 173 HOH HOH . F 4 HOH A 114 914 29 HOH HOH . F 4 HOH A 115 915 52 HOH HOH . F 4 HOH A 116 916 21 HOH HOH . F 4 HOH A 117 917 202 HOH HOH . F 4 HOH A 118 918 109 HOH HOH . F 4 HOH A 119 919 155 HOH HOH . F 4 HOH A 120 920 40 HOH HOH . F 4 HOH A 121 921 154 HOH HOH . F 4 HOH A 122 922 83 HOH HOH . F 4 HOH A 123 923 196 HOH HOH . F 4 HOH A 124 924 151 HOH HOH . F 4 HOH A 125 925 102 HOH HOH . F 4 HOH A 126 926 86 HOH HOH . F 4 HOH A 127 927 112 HOH HOH . F 4 HOH A 128 928 182 HOH HOH . F 4 HOH A 129 929 157 HOH HOH . F 4 HOH A 130 930 95 HOH HOH . F 4 HOH A 131 931 177 HOH HOH . F 4 HOH A 132 932 23 HOH HOH . F 4 HOH A 133 933 138 HOH HOH . F 4 HOH A 134 934 156 HOH HOH . F 4 HOH A 135 935 134 HOH HOH . F 4 HOH A 136 936 152 HOH HOH . F 4 HOH A 137 937 179 HOH HOH . F 4 HOH A 138 938 159 HOH HOH . F 4 HOH A 139 939 168 HOH HOH . F 4 HOH A 140 940 189 HOH HOH . F 4 HOH A 141 941 54 HOH HOH . F 4 HOH A 142 942 186 HOH HOH . F 4 HOH A 143 943 111 HOH HOH . F 4 HOH A 144 944 71 HOH HOH . F 4 HOH A 145 945 89 HOH HOH . F 4 HOH A 146 946 207 HOH HOH . F 4 HOH A 147 947 163 HOH HOH . F 4 HOH A 148 948 197 HOH HOH . F 4 HOH A 149 949 165 HOH HOH . F 4 HOH A 150 950 206 HOH HOH . F 4 HOH A 151 951 204 HOH HOH . F 4 HOH A 152 952 147 HOH HOH . F 4 HOH A 153 953 139 HOH HOH . F 4 HOH A 154 954 172 HOH HOH . F 4 HOH A 155 955 11 HOH HOH . F 4 HOH A 156 956 200 HOH HOH . F 4 HOH A 157 957 90 HOH HOH . F 4 HOH A 158 958 201 HOH HOH . F 4 HOH A 159 959 60 HOH HOH . F 4 HOH A 160 960 169 HOH HOH . F 4 HOH A 161 961 176 HOH HOH . F 4 HOH A 162 962 126 HOH HOH . F 4 HOH A 163 963 171 HOH HOH . F 4 HOH A 164 964 167 HOH HOH . F 4 HOH A 165 965 164 HOH HOH . F 4 HOH A 166 966 133 HOH HOH . F 4 HOH A 167 967 118 HOH HOH . F 4 HOH A 168 968 178 HOH HOH . F 4 HOH A 169 969 185 HOH HOH . F 4 HOH A 170 970 194 HOH HOH . F 4 HOH A 171 971 145 HOH HOH . F 4 HOH A 172 972 64 HOH HOH . F 4 HOH A 173 973 56 HOH HOH . F 4 HOH A 174 974 85 HOH HOH . F 4 HOH A 175 975 128 HOH HOH . F 4 HOH A 176 976 193 HOH HOH . F 4 HOH A 177 977 36 HOH HOH . F 4 HOH A 178 978 57 HOH HOH . F 4 HOH A 179 979 166 HOH HOH . F 4 HOH A 180 980 119 HOH HOH . F 4 HOH A 181 981 160 HOH HOH . F 4 HOH A 182 982 82 HOH HOH . F 4 HOH A 183 983 121 HOH HOH . F 4 HOH A 184 984 114 HOH HOH . F 4 HOH A 185 985 93 HOH HOH . F 4 HOH A 186 986 129 HOH HOH . F 4 HOH A 187 987 63 HOH HOH . F 4 HOH A 188 988 12 HOH HOH . F 4 HOH A 189 989 80 HOH HOH . F 4 HOH A 190 990 88 HOH HOH . F 4 HOH A 191 991 120 HOH HOH . F 4 HOH A 192 992 92 HOH HOH . F 4 HOH A 193 993 188 HOH HOH . F 4 HOH A 194 994 67 HOH HOH . F 4 HOH A 195 995 192 HOH HOH . F 4 HOH A 196 996 115 HOH HOH . F 4 HOH A 197 997 143 HOH HOH . F 4 HOH A 198 998 149 HOH HOH . F 4 HOH A 199 999 113 HOH HOH . F 4 HOH A 200 1000 61 HOH HOH . F 4 HOH A 201 1001 190 HOH HOH . F 4 HOH A 202 1002 53 HOH HOH . F 4 HOH A 203 1003 198 HOH HOH . F 4 HOH A 204 1004 96 HOH HOH . F 4 HOH A 205 1005 130 HOH HOH . F 4 HOH A 206 1006 174 HOH HOH . F 4 HOH A 207 1007 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C35 YAM . . . B 2 11.527 21.356 15.619 1 30.07 0 C35 YAM 701 A 1 HETATM 2 C C34 YAM . . . B 2 12.027 20.688 12.333 1 37.95 0 C34 YAM 701 A 1 HETATM 3 N N2 YAM . . . B 2 7.089 18.658 20.531 1 19.26 0 N2 YAM 701 A 1 HETATM 4 C C7 YAM . . . B 2 6.074 18.115 19.838 1 18.47 0 C7 YAM 701 A 1 HETATM 5 C C6 YAM . . . B 2 6.059 18.062 18.446 1 20.51 0 C6 YAM 701 A 1 HETATM 6 C C13 YAM . . . B 2 9.522 18.536 15.547 1 22.13 0 C13 YAM 701 A 1 HETATM 7 C C20 YAM . . . B 2 10.736 19.084 15.107 1 27.94 0 C20 YAM 701 A 1 HETATM 8 C C21 YAM . . . B 2 13.007 20.878 19.622 1 26.18 0 C21 YAM 701 A 1 HETATM 9 C C8 YAM . . . B 2 4.93 17.401 17.723 1 22.93 0 C8 YAM 701 A 1 HETATM 10 C C18 YAM . . . B 2 10.646 16.416 15.725 1 28.37 0 C18 YAM 701 A 1 HETATM 11 C C16 YAM . . . B 2 11.103 19.625 18.967 1 24.08 0 C16 YAM 701 A 1 HETATM 12 C C19 YAM . . . B 2 11.795 17.04 15.289 1 28.52 0 C19 YAM 701 A 1 HETATM 13 O O33 YAM . . . B 2 10.202 22.27 13.236 1 30.79 0 O33 YAM 701 A 1 HETATM 14 S S31 YAM . . . B 2 10.515 20.886 13.207 1 37.19 0 S31 YAM 701 A 1 HETATM 15 O O32 YAM . . . B 2 9.61 19.943 12.638 1 33.93 0 O32 YAM 701 A 1 HETATM 16 N N30 YAM . . . B 2 10.889 20.407 14.738 1 29.38 0 N30 YAM 701 A 1 HETATM 17 C C17 YAM . . . B 2 9.504 17.182 15.852 1 23.91 0 C17 YAM 701 A 1 HETATM 18 N N1 YAM . . . B 2 11.851 18.34 15.004 1 26.84 0 N1 YAM 701 A 1 HETATM 19 C C12 YAM . . . B 2 8.26 19.349 15.665 1 22.85 0 C12 YAM 701 A 1 HETATM 20 N N10 YAM . . . B 2 7.217 18.661 16.42 1 22.3 0 N10 YAM 701 A 1 HETATM 21 C C5 YAM . . . B 2 7.164 18.602 17.78 1 20.86 0 C5 YAM 701 A 1 HETATM 22 F F29 YAM . . . B 2 4.045 16.91 18.575 1 23.49 0 F29 YAM 701 A 1 HETATM 23 F F28 YAM . . . B 2 4.3 18.181 16.891 1 20.29 0 F28 YAM 701 A 1 HETATM 24 F F27 YAM . . . B 2 5.351 16.364 16.989 1 25.26 0 F27 YAM 701 A 1 HETATM 25 N N4 YAM . . . B 2 8.163 19.164 18.453 1 19.24 0 N4 YAM 701 A 1 HETATM 26 C C3 YAM . . . B 2 8.109 19.14 19.792 1 18.94 0 C3 YAM 701 A 1 HETATM 27 N N9 YAM . . . B 2 9.134 19.643 20.485 1 19.15 0 N9 YAM 701 A 1 HETATM 28 C C11 YAM . . . B 2 10.449 20.021 20.135 1 20.96 0 C11 YAM 701 A 1 HETATM 29 C C14 YAM . . . B 2 11.105 20.834 21.06 1 23.3 0 C14 YAM 701 A 1 HETATM 30 C C22 YAM . . . B 2 12.382 21.239 20.803 1 23.99 0 C22 YAM 701 A 1 HETATM 31 C C23 YAM . . . B 2 13.292 22.119 21.601 1 27.68 0 C23 YAM 701 A 1 HETATM 32 C C15 YAM . . . B 2 12.406 20.035 18.706 1 25.77 0 C15 YAM 701 A 1 HETATM 33 N N25 YAM . . . B 2 14.289 21.458 19.6 1 27.65 0 N25 YAM 701 A 1 HETATM 34 C C24 YAM . . . B 2 14.532 22.17 20.731 1 29.65 0 C24 YAM 701 A 1 HETATM 35 O O26 YAM . . . B 2 15.596 22.705 21.024 1 33.98 0 O26 YAM 701 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #