data_8XP4
#
_model_server_result.job_id            5hjcCu8zK5iSk2qsDRL2nw 
_model_server_result.datetime_utc      '2025-01-26 07:44:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xp4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8XP4 
#
_exptl.entry_id    8XP4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              188.224 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N(6)-ACETYLLYSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XP4 
_cell.length_a            130.337 
_cell.length_b            90.469 
_cell.length_c            107.201 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XP4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H16 N2 O3' 
_chem_comp.formula_weight    188.224 
_chem_comp.id                ALY 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              N(6)-ACETYLLYSINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH CH ALY doub 13 n n 
CH CH3 ALY sing 14 n n 
CH NZ ALY sing 15 n n 
CH3 HH31 ALY sing 16 n n 
CH3 HH32 ALY sing 17 n n 
CH3 HH33 ALY sing 18 n n 
NZ CE ALY sing 19 n n 
NZ HZ ALY sing 20 n n 
CE CD ALY sing 21 n n 
CE HE3 ALY sing 22 n n 
CE HE2 ALY sing 23 n n 
CD CG ALY sing 24 n n 
CD HD3 ALY sing 25 n n 
CD HD2 ALY sing 26 n n 
CG CB ALY sing 27 n n 
CG HG3 ALY sing 28 n n 
CG HG2 ALY sing 29 n n 
CB CA ALY sing 30 n n 
CB HB3 ALY sing 31 n n 
CB HB2 ALY sing 32 n n 
CA N ALY sing 33 n n 
CA C ALY sing 34 n n 
CA HA ALY sing 35 n n 
N H ALY sing 36 n n 
N H2 ALY sing 37 n n 
C O ALY doub 38 n n 
C OXT ALY sing 39 n n 
OXT HXT ALY sing 40 n n 
#
_atom_sites.entry_id                     8XP4 
_atom_sites.fract_transf_matrix[1][1]    0.007672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011054 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ALY A 1 601 601 ALY ALY . 
D 2 ALY B 1 601 601 ALY ALY . 
E 3 HOH A 1 701 181 HOH HOH . 
E 3 HOH A 2 702 145 HOH HOH . 
E 3 HOH A 3 703 177 HOH HOH . 
E 3 HOH A 4 704 122 HOH HOH . 
E 3 HOH A 5 705 101 HOH HOH . 
E 3 HOH A 6 706 158 HOH HOH . 
E 3 HOH A 7 707 175 HOH HOH . 
E 3 HOH A 8 708 88 HOH HOH . 
E 3 HOH A 9 709 47 HOH HOH . 
E 3 HOH A 10 710 3 HOH HOH . 
E 3 HOH A 11 711 37 HOH HOH . 
E 3 HOH A 12 712 6 HOH HOH . 
E 3 HOH A 13 713 184 HOH HOH . 
E 3 HOH A 14 714 42 HOH HOH . 
E 3 HOH A 15 715 166 HOH HOH . 
E 3 HOH A 16 716 114 HOH HOH . 
E 3 HOH A 17 717 1 HOH HOH . 
E 3 HOH A 18 718 120 HOH HOH . 
E 3 HOH A 19 719 113 HOH HOH . 
E 3 HOH A 20 720 31 HOH HOH . 
E 3 HOH A 21 721 53 HOH HOH . 
E 3 HOH A 22 722 182 HOH HOH . 
E 3 HOH A 23 723 55 HOH HOH . 
E 3 HOH A 24 724 119 HOH HOH . 
E 3 HOH A 25 725 43 HOH HOH . 
E 3 HOH A 26 726 29 HOH HOH . 
E 3 HOH A 27 727 14 HOH HOH . 
E 3 HOH A 28 728 157 HOH HOH . 
E 3 HOH A 29 729 126 HOH HOH . 
E 3 HOH A 30 730 58 HOH HOH . 
E 3 HOH A 31 731 99 HOH HOH . 
E 3 HOH A 32 732 67 HOH HOH . 
E 3 HOH A 33 733 64 HOH HOH . 
E 3 HOH A 34 734 73 HOH HOH . 
E 3 HOH A 35 735 133 HOH HOH . 
E 3 HOH A 36 736 27 HOH HOH . 
E 3 HOH A 37 737 79 HOH HOH . 
E 3 HOH A 38 738 160 HOH HOH . 
E 3 HOH A 39 739 121 HOH HOH . 
E 3 HOH A 40 740 81 HOH HOH . 
E 3 HOH A 41 741 45 HOH HOH . 
E 3 HOH A 42 742 60 HOH HOH . 
E 3 HOH A 43 743 17 HOH HOH . 
E 3 HOH A 44 744 18 HOH HOH . 
E 3 HOH A 45 745 69 HOH HOH . 
E 3 HOH A 46 746 7 HOH HOH . 
E 3 HOH A 47 747 162 HOH HOH . 
E 3 HOH A 48 748 28 HOH HOH . 
E 3 HOH A 49 749 5 HOH HOH . 
E 3 HOH A 50 750 161 HOH HOH . 
E 3 HOH A 51 751 50 HOH HOH . 
E 3 HOH A 52 752 33 HOH HOH . 
E 3 HOH A 53 753 103 HOH HOH . 
E 3 HOH A 54 754 107 HOH HOH . 
E 3 HOH A 55 755 52 HOH HOH . 
E 3 HOH A 56 756 129 HOH HOH . 
E 3 HOH A 57 757 111 HOH HOH . 
E 3 HOH A 58 758 87 HOH HOH . 
E 3 HOH A 59 759 127 HOH HOH . 
E 3 HOH A 60 760 142 HOH HOH . 
E 3 HOH A 61 761 63 HOH HOH . 
E 3 HOH A 62 762 25 HOH HOH . 
E 3 HOH A 63 763 71 HOH HOH . 
E 3 HOH A 64 764 186 HOH HOH . 
E 3 HOH A 65 765 108 HOH HOH . 
E 3 HOH A 66 766 95 HOH HOH . 
E 3 HOH A 67 767 167 HOH HOH . 
E 3 HOH A 68 768 168 HOH HOH . 
E 3 HOH A 69 769 188 HOH HOH . 
E 3 HOH A 70 770 125 HOH HOH . 
E 3 HOH A 71 771 91 HOH HOH . 
E 3 HOH A 72 772 187 HOH HOH . 
E 3 HOH A 73 773 46 HOH HOH . 
E 3 HOH A 74 774 189 HOH HOH . 
E 3 HOH A 75 775 154 HOH HOH . 
E 3 HOH A 76 776 102 HOH HOH . 
E 3 HOH A 77 777 139 HOH HOH . 
E 3 HOH A 78 778 78 HOH HOH . 
E 3 HOH A 79 779 192 HOH HOH . 
E 3 HOH A 80 780 57 HOH HOH . 
E 3 HOH A 81 781 165 HOH HOH . 
E 3 HOH A 82 782 179 HOH HOH . 
E 3 HOH A 83 783 141 HOH HOH . 
E 3 HOH A 84 784 159 HOH HOH . 
E 3 HOH A 85 785 151 HOH HOH . 
E 3 HOH A 86 786 70 HOH HOH . 
E 3 HOH A 87 787 173 HOH HOH . 
E 3 HOH A 88 788 89 HOH HOH . 
E 3 HOH A 89 789 183 HOH HOH . 
E 3 HOH A 90 790 174 HOH HOH . 
E 3 HOH A 91 791 146 HOH HOH . 
F 3 HOH B 1 701 140 HOH HOH . 
F 3 HOH B 2 702 16 HOH HOH . 
F 3 HOH B 3 703 131 HOH HOH . 
F 3 HOH B 4 704 105 HOH HOH . 
F 3 HOH B 5 705 13 HOH HOH . 
F 3 HOH B 6 706 155 HOH HOH . 
F 3 HOH B 7 707 68 HOH HOH . 
F 3 HOH B 8 708 65 HOH HOH . 
F 3 HOH B 9 709 62 HOH HOH . 
F 3 HOH B 10 710 2 HOH HOH . 
F 3 HOH B 11 711 36 HOH HOH . 
F 3 HOH B 12 712 54 HOH HOH . 
F 3 HOH B 13 713 22 HOH HOH . 
F 3 HOH B 14 714 40 HOH HOH . 
F 3 HOH B 15 715 49 HOH HOH . 
F 3 HOH B 16 716 132 HOH HOH . 
F 3 HOH B 17 717 32 HOH HOH . 
F 3 HOH B 18 718 148 HOH HOH . 
F 3 HOH B 19 719 176 HOH HOH . 
F 3 HOH B 20 720 41 HOH HOH . 
F 3 HOH B 21 721 180 HOH HOH . 
F 3 HOH B 22 722 84 HOH HOH . 
F 3 HOH B 23 723 34 HOH HOH . 
F 3 HOH B 24 724 116 HOH HOH . 
F 3 HOH B 25 725 23 HOH HOH . 
F 3 HOH B 26 726 147 HOH HOH . 
F 3 HOH B 27 727 10 HOH HOH . 
F 3 HOH B 28 728 171 HOH HOH . 
F 3 HOH B 29 729 19 HOH HOH . 
F 3 HOH B 30 730 98 HOH HOH . 
F 3 HOH B 31 731 117 HOH HOH . 
F 3 HOH B 32 732 134 HOH HOH . 
F 3 HOH B 33 733 96 HOH HOH . 
F 3 HOH B 34 734 48 HOH HOH . 
F 3 HOH B 35 735 185 HOH HOH . 
F 3 HOH B 36 736 150 HOH HOH . 
F 3 HOH B 37 737 4 HOH HOH . 
F 3 HOH B 38 738 66 HOH HOH . 
F 3 HOH B 39 739 8 HOH HOH . 
F 3 HOH B 40 740 93 HOH HOH . 
F 3 HOH B 41 741 137 HOH HOH . 
F 3 HOH B 42 742 104 HOH HOH . 
F 3 HOH B 43 743 123 HOH HOH . 
F 3 HOH B 44 744 21 HOH HOH . 
F 3 HOH B 45 745 51 HOH HOH . 
F 3 HOH B 46 746 15 HOH HOH . 
F 3 HOH B 47 747 94 HOH HOH . 
F 3 HOH B 48 748 190 HOH HOH . 
F 3 HOH B 49 749 149 HOH HOH . 
F 3 HOH B 50 750 75 HOH HOH . 
F 3 HOH B 51 751 143 HOH HOH . 
F 3 HOH B 52 752 44 HOH HOH . 
F 3 HOH B 53 753 92 HOH HOH . 
F 3 HOH B 54 754 74 HOH HOH . 
F 3 HOH B 55 755 24 HOH HOH . 
F 3 HOH B 56 756 97 HOH HOH . 
F 3 HOH B 57 757 138 HOH HOH . 
F 3 HOH B 58 758 11 HOH HOH . 
F 3 HOH B 59 759 76 HOH HOH . 
F 3 HOH B 60 760 112 HOH HOH . 
F 3 HOH B 61 761 90 HOH HOH . 
F 3 HOH B 62 762 80 HOH HOH . 
F 3 HOH B 63 763 30 HOH HOH . 
F 3 HOH B 64 764 172 HOH HOH . 
F 3 HOH B 65 765 109 HOH HOH . 
F 3 HOH B 66 766 39 HOH HOH . 
F 3 HOH B 67 767 130 HOH HOH . 
F 3 HOH B 68 768 153 HOH HOH . 
F 3 HOH B 69 769 38 HOH HOH . 
F 3 HOH B 70 770 9 HOH HOH . 
F 3 HOH B 71 771 110 HOH HOH . 
F 3 HOH B 72 772 26 HOH HOH . 
F 3 HOH B 73 773 86 HOH HOH . 
F 3 HOH B 74 774 135 HOH HOH . 
F 3 HOH B 75 775 59 HOH HOH . 
F 3 HOH B 76 776 164 HOH HOH . 
F 3 HOH B 77 777 20 HOH HOH . 
F 3 HOH B 78 778 82 HOH HOH . 
F 3 HOH B 79 779 72 HOH HOH . 
F 3 HOH B 80 780 83 HOH HOH . 
F 3 HOH B 81 781 106 HOH HOH . 
F 3 HOH B 82 782 178 HOH HOH . 
F 3 HOH B 83 783 100 HOH HOH . 
F 3 HOH B 84 784 191 HOH HOH . 
F 3 HOH B 85 785 128 HOH HOH . 
F 3 HOH B 86 786 169 HOH HOH . 
F 3 HOH B 87 787 115 HOH HOH . 
F 3 HOH B 88 788 12 HOH HOH . 
F 3 HOH B 89 789 124 HOH HOH . 
F 3 HOH B 90 790 156 HOH HOH . 
F 3 HOH B 91 791 170 HOH HOH . 
F 3 HOH B 92 792 118 HOH HOH . 
F 3 HOH B 93 793 85 HOH HOH . 
F 3 HOH B 94 794 136 HOH HOH . 
F 3 HOH B 95 795 144 HOH HOH . 
F 3 HOH B 96 796 61 HOH HOH . 
F 3 HOH B 97 797 152 HOH HOH . 
F 3 HOH B 98 798 77 HOH HOH . 
F 3 HOH B 99 799 35 HOH HOH . 
F 3 HOH B 100 800 56 HOH HOH . 
F 3 HOH B 101 801 163 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH ALY . . . D 2 14.91 22.046 -5.711 1 63.17 ? OH ALY 601 B 1 
HETATM 2 C CH ALY . . . D 2 13.854 22.068 -5.042 1 52.41 ? CH ALY 601 B 1 
HETATM 3 C CH3 ALY . . . D 2 13.279 23.373 -4.553 1 53.78 ? CH3 ALY 601 B 1 
HETATM 4 N NZ ALY . . . D 2 13.162 20.904 -4.705 1 63.87 ? NZ ALY 601 B 1 
HETATM 5 C CE ALY . . . D 2 13.609 19.6 -5.083 1 70.64 ? CE ALY 601 B 1 
HETATM 6 C CD ALY . . . D 2 13.162 18.568 -4.056 1 56.55 ? CD ALY 601 B 1 
HETATM 7 C CG ALY . . . D 2 13.418 19.165 -2.699 1 51.72 ? CG ALY 601 B 1 
HETATM 8 C CB ALY . . . D 2 14.892 19.297 -2.436 1 63.48 ? CB ALY 601 B 1 
HETATM 9 C CA ALY . . . D 2 15.498 17.941 -2.055 1 50.83 ? CA ALY 601 B 1 
HETATM 10 N N ALY . . . D 2 16.632 18.044 -1.168 1 46.9 ? N ALY 601 B 1 
HETATM 11 C C ALY . . . D 2 15.906 17.229 -3.331 1 67.47 ? C ALY 601 B 1 
HETATM 12 O O ALY . . . D 2 15.884 17.663 -4.482 1 77.07 ? O ALY 601 B 1 
HETATM 13 O OXT ALY . . . D 2 16.362 15.959 -3.135 1 64.28 ? OXT ALY 601 B 1 
#
_model_server_stats.io_time_ms              108 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#