data_8XPU # _model_server_result.job_id nYFoSNbT1wvpOadOawwr3g _model_server_result.datetime_utc '2024-11-22 14:38:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 8XPU # _exptl.entry_id 8XPU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 472.321 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Nanvuranlat _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XPU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 701 NAG 3 n C NAG 2 C 2 NAG C 702 NAG 3 n D NAG 1 D 1 NAG C 703 NAG 3 n D NAG 2 D 2 NAG C 704 NAG 3 n E NAG 1 E 1 NAG C 705 NAG 3 n E NAG 2 E 2 NAG C 706 NAG 3 n F NAG 1 F 1 NAG C 707 NAG 3 n F NAG 2 F 2 NAG C 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale2 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale3 A ND2 ASN 521 A ASN 507 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C23 H19 Cl2 N3 O4' _chem_comp.formula_weight 472.321 _chem_comp.id VRW _chem_comp.mon_nstd_flag . _chem_comp.name Nanvuranlat _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2~{S})-2-azanyl-3-[4-[(5-azanyl-2-phenyl-1,3-benzoxazol-7-yl)methoxy]-3,5-bis(chloranyl)phenyl]propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C16 VRW sing 404 n n C14 O2 VRW sing 405 n n C14 C12 VRW sing 406 n n O2 C15 VRW sing 407 n n C11 C12 VRW doub 408 n y C11 C10 VRW sing 409 n y C16 C15 VRW doub 410 n y C16 C17 VRW sing 411 n y C12 C13 VRW sing 412 n y C15 C20 VRW sing 413 n y N3 C10 VRW sing 414 n n C10 C9 VRW doub 415 n y C17 C18 VRW doub 416 n y C20 CL1 VRW sing 417 n n C20 C19 VRW doub 418 n y C13 O1 VRW sing 419 n y C13 C8 VRW doub 420 n y O1 C7 VRW sing 421 n y C18 C19 VRW sing 422 n y C18 C21 VRW sing 423 n n C9 C8 VRW sing 424 n y N2 C22 VRW sing 425 n n C8 N1 VRW sing 426 n y C22 C21 VRW sing 427 n n C22 C23 VRW sing 428 n n C7 N1 VRW doub 429 n y C7 C4 VRW sing 430 n n C5 C4 VRW doub 431 n y C5 C6 VRW sing 432 n y C23 O3 VRW doub 433 n n C23 O4 VRW sing 434 n n C4 C3 VRW sing 435 n y C6 C1 VRW doub 436 n y C3 C2 VRW doub 437 n y C1 C2 VRW sing 438 n y N3 H1 VRW sing 439 n n N3 H2 VRW sing 440 n n C5 H3 VRW sing 441 n n C6 H4 VRW sing 442 n n C2 H5 VRW sing 443 n n C1 H6 VRW sing 444 n n C3 H7 VRW sing 445 n n C9 H8 VRW sing 446 n n C11 H9 VRW sing 447 n n C14 H10 VRW sing 448 n n C14 H11 VRW sing 449 n n C17 H12 VRW sing 450 n n C19 H13 VRW sing 451 n n C21 H14 VRW sing 452 n n C21 H15 VRW sing 453 n n C22 H16 VRW sing 454 n n O4 H17 VRW sing 455 n n N2 H18 VRW sing 456 n n N2 H19 VRW sing 457 n n # _atom_sites.entry_id 8XPU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id VRW _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id VRW _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VRW . . . G 4 142.331 146.096 146.303 1 220.51 ? N1 VRW 601 B 1 HETATM 2 N N3 VRW . . . G 4 142.276 150.744 148.657 1 220.14 ? N3 VRW 601 B 1 HETATM 3 C C4 VRW . . . G 4 143.207 143.876 145.374 1 220.86 ? C4 VRW 601 B 1 HETATM 4 C C5 VRW . . . G 4 141.84 143.4 144.965 1 220.73 ? C5 VRW 601 B 1 HETATM 5 C C6 VRW . . . G 4 141.646 142.063 144.258 1 220.44 ? C6 VRW 601 B 1 HETATM 6 C C2 VRW . . . G 4 144.242 141.66 144.366 1 220.45 ? C2 VRW 601 B 1 HETATM 7 C C1 VRW . . . G 4 142.855 141.183 143.954 1 220.5 ? C1 VRW 601 B 1 HETATM 8 C C3 VRW . . . G 4 144.404 142.996 145.074 1 220.47 ? C3 VRW 601 B 1 HETATM 9 C C7 VRW . . . G 4 143.353 145.224 146.087 1 220.81 ? C7 VRW 601 B 1 HETATM 10 C C8 VRW . . . G 4 142.827 147.149 146.95 1 220.34 ? C8 VRW 601 B 1 HETATM 11 C C9 VRW . . . G 4 142.146 148.457 147.459 1 220.14 ? C9 VRW 601 B 1 HETATM 12 C C10 VRW . . . G 4 142.961 149.502 148.174 1 220.29 ? C10 VRW 601 B 1 HETATM 13 C C11 VRW . . . G 4 144.419 149.275 148.39 1 220.61 ? C11 VRW 601 B 1 HETATM 14 C C12 VRW . . . G 4 145.064 148.012 147.889 1 220.61 ? C12 VRW 601 B 1 HETATM 15 C C13 VRW . . . G 4 144.193 146.933 147.148 1 220.6 ? C13 VRW 601 B 1 HETATM 16 O O1 VRW . . . G 4 144.507 145.752 146.618 1 220.64 ? O1 VRW 601 B 1 HETATM 17 C C14 VRW . . . G 4 146.576 147.747 148.1 1 220.51 ? C14 VRW 601 B 1 HETATM 18 O O2 VRW . . . G 4 147.288 147.922 146.897 1 220.67 ? O2 VRW 601 B 1 HETATM 19 C C15 VRW . . . G 4 147.344 146.81 146.075 1 220.42 ? C15 VRW 601 B 1 HETATM 20 C C16 VRW . . . G 4 147.626 145.409 146.645 1 220.46 ? C16 VRW 601 B 1 HETATM 21 C C17 VRW . . . G 4 147.681 144.202 145.707 1 220.22 ? C17 VRW 601 B 1 HETATM 22 C C18 VRW . . . G 4 147.464 144.382 144.203 1 220.13 ? C18 VRW 601 B 1 HETATM 23 C C19 VRW . . . G 4 147.179 145.774 143.64 1 220.06 ? C19 VRW 601 B 1 HETATM 24 C C20 VRW . . . G 4 147.126 146.98 144.585 1 220.34 ? C20 VRW 601 B 1 HETATM 25 CL CL1 VRW . . . G 4 146.805 148.609 143.922 1 221.07 ? CL1 VRW 601 B 1 HETATM 26 C C21 VRW . . . G 4 147.51 143.154 143.233 1 220.24 ? C21 VRW 601 B 1 HETATM 27 C C22 VRW . . . G 4 148.914 142.893 142.687 1 220.23 ? C22 VRW 601 B 1 HETATM 28 C C23 VRW . . . G 4 148.774 141.93 141.489 1 220.3 ? C23 VRW 601 B 1 HETATM 29 O O3 VRW . . . G 4 149.744 141.724 140.724 1 220.35 ? O3 VRW 601 B 1 HETATM 30 O O4 VRW . . . G 4 147.661 141.347 141.286 1 220.27 ? O4 VRW 601 B 1 HETATM 31 N N2 VRW . . . G 4 149.536 144.105 142.254 1 220.35 ? N2 VRW 601 B 1 HETATM 32 CL CL2 VRW . . . G 4 147.885 145.193 148.397 1 221.4 ? CL2 VRW 601 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #