data_8XQX # _model_server_result.job_id A73zcX9GeSp00RXyDoSKmQ _model_server_result.datetime_utc '2025-03-02 15:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":3001}' # _entry.id 8XQX # _exptl.entry_id 8XQX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 625.018 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XQX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 AA N N ? 25 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 200 H CYS 200 1_555 H SG CYS 253 H CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B C LYS 336 B LYS 336 1_555 B N TPO 337 B TPO 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B C TPO 337 B TPO 337 1_555 B N GLU 338 B GLU 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C PHE 345 B PHE 345 1_555 B N TPO 346 B TPO 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C TPO 346 B TPO 346 1_555 B N TPO 347 B TPO 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C TPO 347 B TPO 347 1_555 B N GLU 348 B GLU 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 J C ASP 71 J ASP 71 1_555 J N 4HH 72 J 4HH 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 J C 4HH 72 J 4HH 72 1_555 J N LEU 73 J LEU 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 R C GLU 125 R GLU 125 1_555 R N SEP 126 R SEP 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 R C SEP 126 R SEP 126 1_555 R N GLU 127 R GLU 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 R C ASP 166 R ASP 166 1_555 R N TPO 167 R TPO 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 R C TPO 167 R TPO 167 1_555 R N PRO 168 R PRO 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 S C LEU 83 S LEU 83 1_555 S N SEP 84 S SEP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 S C SEP 84 S SEP 84 1_555 S N SEP 85 S SEP 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 S C SEP 85 S SEP 85 1_555 S N GLU 86 S GLU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 S C ALA 106 S ALA 106 1_555 S N TPO 107 S TPO 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 S C TPO 107 S TPO 107 1_555 S N ASP 108 S ASP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 T C ASP 17 T ASP 17 1_555 T N SEP 18 T SEP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 T C SEP 18 T SEP 18 1_555 T N VAL 19 T VAL 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 T C TYR 27 T TYR 27 1_555 T N SEP 28 T SEP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 T C SEP 28 T SEP 28 1_555 T N GLU 29 T GLU 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OG1 THR 506 A THR 506 1_555 X MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 R SG CYS 58 R CYS 58 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 R SG CYS 61 R CYS 61 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 R SG CYS 69 R CYS 69 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 R SG CYS 72 R CYS 72 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 R SG CYS 116 R CYS 116 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 R SG CYS 306 R CYS 306 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 R SG CYS 309 R CYS 309 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 223 n n CA1 OA1 DGA doub 224 n n CA1 OG1 DGA sing 225 n n CA2 CA3 DGA sing 226 n n CA2 HA21 DGA sing 227 n n CA2 HA22 DGA sing 228 n n CA3 CA4 DGA sing 229 n n CA3 HA31 DGA sing 230 n n CA3 HA32 DGA sing 231 n n CA4 CA5 DGA sing 232 n n CA4 HA41 DGA sing 233 n n CA4 HA42 DGA sing 234 n n CA5 CA6 DGA sing 235 n n CA5 HA51 DGA sing 236 n n CA5 HA52 DGA sing 237 n n CA6 CA7 DGA sing 238 n n CA6 HA61 DGA sing 239 n n CA6 HA62 DGA sing 240 n n CA7 CA8 DGA sing 241 n n CA7 HA71 DGA sing 242 n n CA7 HA72 DGA sing 243 n n CA8 CA9 DGA sing 244 n n CA8 HA81 DGA sing 245 n n CA8 HA82 DGA sing 246 n n CA9 CAA DGA sing 247 n n CA9 HA91 DGA sing 248 n n CA9 HA92 DGA sing 249 n n CAA CBA DGA sing 250 n n CAA HAT1 DGA sing 251 n n CAA HAT2 DGA sing 252 n n CBA CCA DGA sing 253 n n CBA HAE1 DGA sing 254 n n CBA HAE2 DGA sing 255 n n CCA CDA DGA sing 256 n n CCA HAW1 DGA sing 257 n n CCA HAW2 DGA sing 258 n n CDA CEA DGA sing 259 n n CDA HAH1 DGA sing 260 n n CDA HAH2 DGA sing 261 n n CEA CFA DGA sing 262 n n CEA HAF1 DGA sing 263 n n CEA HAF2 DGA sing 264 n n CFA CGA DGA sing 265 n n CFA HAN1 DGA sing 266 n n CFA HAN2 DGA sing 267 n n CGA CHA DGA sing 268 n n CGA HAS1 DGA sing 269 n n CGA HAS2 DGA sing 270 n n CHA CIA DGA sing 271 n n CHA HAV1 DGA sing 272 n n CHA HAV2 DGA sing 273 n n CIA HAG1 DGA sing 274 n n CIA HAG2 DGA sing 275 n n CIA HAG3 DGA sing 276 n n CB1 CB2 DGA sing 277 n n CB1 OB1 DGA doub 278 n n CB1 OG2 DGA sing 279 n n CB2 CB3 DGA sing 280 n n CB2 HB21 DGA sing 281 n n CB2 HB22 DGA sing 282 n n CB3 CB4 DGA sing 283 n n CB3 HB31 DGA sing 284 n n CB3 HB32 DGA sing 285 n n CB4 CB5 DGA sing 286 n n CB4 HB41 DGA sing 287 n n CB4 HB42 DGA sing 288 n n CB5 CB6 DGA sing 289 n n CB5 HB51 DGA sing 290 n n CB5 HB52 DGA sing 291 n n CB6 CB7 DGA sing 292 n n CB6 HB61 DGA sing 293 n n CB6 HB62 DGA sing 294 n n CB7 CB8 DGA sing 295 n n CB7 HB71 DGA sing 296 n n CB7 HB72 DGA sing 297 n n CB8 CB9 DGA sing 298 n n CB8 HB81 DGA sing 299 n n CB8 HB82 DGA sing 300 n n CB9 CAB DGA sing 301 n n CB9 HB91 DGA sing 302 n n CB9 HB92 DGA sing 303 n n CAB CBB DGA sing 304 n n CAB HBT1 DGA sing 305 n n CAB HBT2 DGA sing 306 n n CBB CCB DGA sing 307 n n CBB HBE1 DGA sing 308 n n CBB HBE2 DGA sing 309 n n CCB CDB DGA sing 310 n n CCB HBW1 DGA sing 311 n n CCB HBW2 DGA sing 312 n n CDB CEB DGA sing 313 n n CDB HBH1 DGA sing 314 n n CDB HBH2 DGA sing 315 n n CEB CFB DGA sing 316 n n CEB HBF1 DGA sing 317 n n CEB HBF2 DGA sing 318 n n CFB CGB DGA sing 319 n n CFB HBN1 DGA sing 320 n n CFB HBN2 DGA sing 321 n n CGB CHB DGA sing 322 n n CGB HBS1 DGA sing 323 n n CGB HBS2 DGA sing 324 n n CHB CIB DGA sing 325 n n CHB HBV1 DGA sing 326 n n CHB HBV2 DGA sing 327 n n CIB HBG1 DGA sing 328 n n CIB HBG2 DGA sing 329 n n CIB HBG3 DGA sing 330 n n OG1 CG1 DGA sing 331 n n CG1 CG2 DGA sing 332 n n CG1 HG11 DGA sing 333 n n CG1 HG12 DGA sing 334 n n CG2 OG2 DGA sing 335 n n CG2 CG3 DGA sing 336 n n CG2 HG2 DGA sing 337 n n CG3 OXT DGA sing 338 n n CG3 HG31 DGA sing 339 n n CG3 HG32 DGA sing 340 n n OXT HXT DGA sing 341 n n # _atom_sites.entry_id 8XQX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 22 LMG A 1 1201 1201 LMG LMG . X 23 MG A 1 1202 1202 MG MG . Y 24 SQD B 1 1201 1201 SQD SQD . Z 22 LMG C 1 1201 1201 LMG LMG . AA 25 DGA D 1 3101 3101 DGA DGA . BA 26 Y01 D 1 3102 3102 Y01 Y01 . CA 24 SQD I 1 401 401 SQD SQD . DA 22 LMG I 1 402 402 LMG LMG . EA 27 DGD I 1 403 403 DGD DGD . FA 22 LMG K 1 301 301 LMG LMG . GA 24 SQD K 1 302 302 SQD SQD . HA 25 DGA L 1 3001 3001 DGA DGA . IA 22 LMG M 1 801 801 LMG LMG . JA 26 Y01 M 1 802 802 Y01 Y01 . KA 27 DGD N 1 201 201 DGD DGD . LA 28 A1LXL P 1 701 701 A1LXL LIG . MA 28 A1LXL P 1 702 702 A1LXL LIG . NA 29 ZN R 1 500 500 ZN ZN . OA 29 ZN R 1 501 501 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . HA 25 209.798 230.14 188.417 1 50.99 ? CA1 DGA 3001 L 1 HETATM 2 C CA2 DGA . . . HA 25 209.805 228.762 189.132 1 50.99 ? CA2 DGA 3001 L 1 HETATM 3 C CA3 DGA . . . HA 25 208.391 228.468 189.714 1 50.99 ? CA3 DGA 3001 L 1 HETATM 4 C CA4 DGA . . . HA 25 208.31 226.988 190.161 1 50.99 ? CA4 DGA 3001 L 1 HETATM 5 C CA5 DGA . . . HA 25 208.305 226.937 191.715 1 50.99 ? CA5 DGA 3001 L 1 HETATM 6 C CA6 DGA . . . HA 25 207.652 225.603 192.189 1 50.99 ? CA6 DGA 3001 L 1 HETATM 7 C CA7 DGA . . . HA 25 206.464 225.914 193.127 1 50.99 ? CA7 DGA 3001 L 1 HETATM 8 C CA8 DGA . . . HA 25 206.888 225.678 194.605 1 50.99 ? CA8 DGA 3001 L 1 HETATM 9 C CA9 DGA . . . HA 25 206.045 224.521 195.221 1 50.99 ? CA9 DGA 3001 L 1 HETATM 10 C CAA DGA . . . HA 25 207 223.496 195.865 1 50.99 ? CAA DGA 3001 L 1 HETATM 11 C CBA DGA . . . HA 25 206.217 222.235 196.266 1 50.99 ? CBA DGA 3001 L 1 HETATM 12 O OA1 DGA . . . HA 25 209.796 231.141 189.058 1 50.99 ? OA1 DGA 3001 L 1 HETATM 13 C CB1 DGA . . . HA 25 212.448 228.031 185.539 1 50.99 ? CB1 DGA 3001 L 1 HETATM 14 C CB2 DGA . . . HA 25 212.203 227.117 186.767 1 50.99 ? CB2 DGA 3001 L 1 HETATM 15 C CB3 DGA . . . HA 25 212.016 225.661 186.258 1 50.99 ? CB3 DGA 3001 L 1 HETATM 16 C CB4 DGA . . . HA 25 212.882 224.714 187.119 1 50.99 ? CB4 DGA 3001 L 1 HETATM 17 C CB5 DGA . . . HA 25 211.969 223.694 187.818 1 50.99 ? CB5 DGA 3001 L 1 HETATM 18 C CB6 DGA . . . HA 25 212.052 223.91 189.334 1 50.99 ? CB6 DGA 3001 L 1 HETATM 19 C CB7 DGA . . . HA 25 211.882 222.559 190.034 1 50.99 ? CB7 DGA 3001 L 1 HETATM 20 C CB8 DGA . . . HA 25 211.052 222.786 191.3 1 50.99 ? CB8 DGA 3001 L 1 HETATM 21 C CB9 DGA . . . HA 25 210.785 221.431 191.951 1 50.99 ? CB9 DGA 3001 L 1 HETATM 22 C CAB DGA . . . HA 25 210.958 221.567 193.469 1 50.99 ? CAB DGA 3001 L 1 HETATM 23 C CBB DGA . . . HA 25 209.796 220.812 194.148 1 50.99 ? CBB DGA 3001 L 1 HETATM 24 C CCB DGA . . . HA 25 210.336 219.476 194.693 1 50.99 ? CCB DGA 3001 L 1 HETATM 25 C CDB DGA . . . HA 25 208.82 219.124 194.577 1 50.99 ? CDB DGA 3001 L 1 HETATM 26 C CEB DGA . . . HA 25 208.587 217.664 195.072 1 50.99 ? CEB DGA 3001 L 1 HETATM 27 C CFB DGA . . . HA 25 207.48 217.659 196.154 1 50.99 ? CFB DGA 3001 L 1 HETATM 28 O OB1 DGA . . . HA 25 213.321 227.774 184.778 1 50.99 ? OB1 DGA 3001 L 1 HETATM 29 O OG1 DGA . . . HA 25 209.797 230.206 186.991 1 50.99 ? OG1 DGA 3001 L 1 HETATM 30 C CG1 DGA . . . HA 25 210.758 231.103 186.449 1 50.99 ? CG1 DGA 3001 L 1 HETATM 31 C CG2 DGA . . . HA 25 212.006 230.316 186.049 1 50.99 ? CG2 DGA 3001 L 1 HETATM 32 O OG2 DGA . . . HA 25 211.619 229.181 185.315 1 50.99 ? OG2 DGA 3001 L 1 HETATM 33 C CG3 DGA . . . HA 25 212.904 231.188 185.19 1 50.99 ? CG3 DGA 3001 L 1 HETATM 34 O OXT DGA . . . HA 25 213.855 231.835 185.997 1 50.99 ? OXT DGA 3001 L 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 60 _model_server_stats.create_model_time_ms 131 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #