data_8XQX # _model_server_result.job_id 1t244BJDRUJOW6RnGMq4cA _model_server_result.datetime_utc '2025-03-02 15:19:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":402}' # _entry.id 8XQX # _exptl.entry_id 8XQX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.158 _entity.id 22 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XQX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 22 W N N ? 22 Z N N ? 22 DA N N ? 22 FA N N ? 22 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 200 H CYS 200 1_555 H SG CYS 253 H CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B C LYS 336 B LYS 336 1_555 B N TPO 337 B TPO 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B C TPO 337 B TPO 337 1_555 B N GLU 338 B GLU 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C PHE 345 B PHE 345 1_555 B N TPO 346 B TPO 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C TPO 346 B TPO 346 1_555 B N TPO 347 B TPO 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C TPO 347 B TPO 347 1_555 B N GLU 348 B GLU 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 J C ASP 71 J ASP 71 1_555 J N 4HH 72 J 4HH 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 J C 4HH 72 J 4HH 72 1_555 J N LEU 73 J LEU 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 R C GLU 125 R GLU 125 1_555 R N SEP 126 R SEP 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 R C SEP 126 R SEP 126 1_555 R N GLU 127 R GLU 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 R C ASP 166 R ASP 166 1_555 R N TPO 167 R TPO 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 R C TPO 167 R TPO 167 1_555 R N PRO 168 R PRO 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 S C LEU 83 S LEU 83 1_555 S N SEP 84 S SEP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 S C SEP 84 S SEP 84 1_555 S N SEP 85 S SEP 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 S C SEP 85 S SEP 85 1_555 S N GLU 86 S GLU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 S C ALA 106 S ALA 106 1_555 S N TPO 107 S TPO 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 S C TPO 107 S TPO 107 1_555 S N ASP 108 S ASP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 T C ASP 17 T ASP 17 1_555 T N SEP 18 T SEP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 T C SEP 18 T SEP 18 1_555 T N VAL 19 T VAL 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 T C TYR 27 T TYR 27 1_555 T N SEP 28 T SEP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 T C SEP 28 T SEP 28 1_555 T N GLU 29 T GLU 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OG1 THR 506 A THR 506 1_555 X MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 R SG CYS 58 R CYS 58 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 R SG CYS 61 R CYS 61 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 R SG CYS 69 R CYS 69 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 R SG CYS 72 R CYS 72 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 R SG CYS 116 R CYS 116 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 R SG CYS 306 R CYS 306 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 R SG CYS 309 R CYS 309 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C45 H86 O10' _chem_comp.formula_weight 787.158 _chem_comp.id LMG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LMG sing 614 n n C1 C2 LMG sing 615 n n C1 O6 LMG sing 616 n n C1 HC1 LMG sing 617 n n O1 C7 LMG sing 618 n n C2 O2 LMG sing 619 n n C2 C3 LMG sing 620 n n C2 HC2 LMG sing 621 n n O2 HO2 LMG sing 622 n n C3 O3 LMG sing 623 n n C3 C4 LMG sing 624 n n C3 HC3 LMG sing 625 n n O3 HO3 LMG sing 626 n n C4 O4 LMG sing 627 n n C4 C5 LMG sing 628 n n C4 HC4 LMG sing 629 n n O4 HO4 LMG sing 630 n n C5 C6 LMG sing 631 n n C5 O6 LMG sing 632 n n C5 HC5 LMG sing 633 n n O5 C6 LMG sing 634 n n O5 HO5 LMG sing 635 n n C6 HC61 LMG sing 636 n n C6 HC62 LMG sing 637 n n C7 C8 LMG sing 638 n n C7 HC71 LMG sing 639 n n C7 HC72 LMG sing 640 n n C8 C9 LMG sing 641 n n C8 O7 LMG sing 642 n n C8 HC8 LMG sing 643 n n C9 O8 LMG sing 644 n n C9 HC91 LMG sing 645 n n C9 HC92 LMG sing 646 n n O7 C10 LMG sing 647 n n C10 O9 LMG doub 648 n n C10 C11 LMG sing 649 n n C11 C12 LMG sing 650 n n C11 H111 LMG sing 651 n n C11 H112 LMG sing 652 n n C12 C13 LMG sing 653 n n C12 H121 LMG sing 654 n n C12 H122 LMG sing 655 n n C13 C14 LMG sing 656 n n C13 H131 LMG sing 657 n n C13 H132 LMG sing 658 n n C14 C15 LMG sing 659 n n C14 H141 LMG sing 660 n n C14 H142 LMG sing 661 n n C15 C16 LMG sing 662 n n C15 H151 LMG sing 663 n n C15 H152 LMG sing 664 n n C16 C17 LMG sing 665 n n C16 H161 LMG sing 666 n n C16 H162 LMG sing 667 n n C17 C18 LMG sing 668 n n C17 H171 LMG sing 669 n n C17 H172 LMG sing 670 n n C18 C19 LMG sing 671 n n C18 H181 LMG sing 672 n n C18 H182 LMG sing 673 n n C19 C20 LMG sing 674 n n C19 H191 LMG sing 675 n n C19 H192 LMG sing 676 n n C20 C21 LMG sing 677 n n C20 H201 LMG sing 678 n n C20 H202 LMG sing 679 n n C21 C22 LMG sing 680 n n C21 H211 LMG sing 681 n n C21 H212 LMG sing 682 n n C22 C23 LMG sing 683 n n C22 H221 LMG sing 684 n n C22 H222 LMG sing 685 n n C23 C24 LMG sing 686 n n C23 H231 LMG sing 687 n n C23 H232 LMG sing 688 n n C24 C25 LMG sing 689 n n C24 H241 LMG sing 690 n n C24 H242 LMG sing 691 n n C25 C26 LMG sing 692 n n C25 H251 LMG sing 693 n n C25 H252 LMG sing 694 n n C26 C27 LMG sing 695 n n C26 H261 LMG sing 696 n n C26 H262 LMG sing 697 n n C27 H271 LMG sing 698 n n C27 H272 LMG sing 699 n n C27 H273 LMG sing 700 n n O8 C28 LMG sing 701 n n C28 O10 LMG doub 702 n n C28 C29 LMG sing 703 n n C29 C30 LMG sing 704 n n C29 H291 LMG sing 705 n n C29 H292 LMG sing 706 n n C30 C31 LMG sing 707 n n C30 H301 LMG sing 708 n n C30 H302 LMG sing 709 n n C31 C32 LMG sing 710 n n C31 H311 LMG sing 711 n n C31 H312 LMG sing 712 n n C32 C33 LMG sing 713 n n C32 H321 LMG sing 714 n n C32 H322 LMG sing 715 n n C33 C34 LMG sing 716 n n C33 H331 LMG sing 717 n n C33 H332 LMG sing 718 n n C34 C35 LMG sing 719 n n C34 H341 LMG sing 720 n n C34 H342 LMG sing 721 n n C35 C36 LMG sing 722 n n C35 H351 LMG sing 723 n n C35 H352 LMG sing 724 n n C36 C37 LMG sing 725 n n C36 H361 LMG sing 726 n n C36 H362 LMG sing 727 n n C37 C38 LMG sing 728 n n C37 H371 LMG sing 729 n n C37 H372 LMG sing 730 n n C38 C39 LMG sing 731 n n C38 H381 LMG sing 732 n n C38 H382 LMG sing 733 n n C39 C40 LMG sing 734 n n C39 H391 LMG sing 735 n n C39 H392 LMG sing 736 n n C40 C41 LMG sing 737 n n C40 H401 LMG sing 738 n n C40 H402 LMG sing 739 n n C41 C42 LMG sing 740 n n C41 H411 LMG sing 741 n n C41 H412 LMG sing 742 n n C42 C43 LMG sing 743 n n C42 H421 LMG sing 744 n n C42 H422 LMG sing 745 n n C43 C44 LMG sing 746 n n C43 H431 LMG sing 747 n n C43 H432 LMG sing 748 n n C44 C45 LMG sing 749 n n C44 H441 LMG sing 750 n n C44 H442 LMG sing 751 n n C45 H451 LMG sing 752 n n C45 H452 LMG sing 753 n n C45 H453 LMG sing 754 n n # _atom_sites.entry_id 8XQX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 22 LMG A 1 1201 1201 LMG LMG . X 23 MG A 1 1202 1202 MG MG . Y 24 SQD B 1 1201 1201 SQD SQD . Z 22 LMG C 1 1201 1201 LMG LMG . AA 25 DGA D 1 3101 3101 DGA DGA . BA 26 Y01 D 1 3102 3102 Y01 Y01 . CA 24 SQD I 1 401 401 SQD SQD . DA 22 LMG I 1 402 402 LMG LMG . EA 27 DGD I 1 403 403 DGD DGD . FA 22 LMG K 1 301 301 LMG LMG . GA 24 SQD K 1 302 302 SQD SQD . HA 25 DGA L 1 3001 3001 DGA DGA . IA 22 LMG M 1 801 801 LMG LMG . JA 26 Y01 M 1 802 802 Y01 Y01 . KA 27 DGD N 1 201 201 DGD DGD . LA 28 A1LXL P 1 701 701 A1LXL LIG . MA 28 A1LXL P 1 702 702 A1LXL LIG . NA 29 ZN R 1 500 500 ZN ZN . OA 29 ZN R 1 501 501 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMG . . . DA 22 157.546 228.49 177.964 1 76.12 ? C1 LMG 402 I 1 HETATM 2 O O1 LMG . . . DA 22 158.178 229.732 178.076 1 76.12 ? O1 LMG 402 I 1 HETATM 3 C C2 LMG . . . DA 22 158.302 227.763 176.852 1 76.12 ? C2 LMG 402 I 1 HETATM 4 O O2 LMG . . . DA 22 157.985 228.467 175.695 1 76.12 ? O2 LMG 402 I 1 HETATM 5 C C3 LMG . . . DA 22 157.651 226.381 176.743 1 76.12 ? C3 LMG 402 I 1 HETATM 6 O O3 LMG . . . DA 22 158.428 225.707 175.805 1 76.12 ? O3 LMG 402 I 1 HETATM 7 C C4 LMG . . . DA 22 157.745 225.648 178.102 1 76.12 ? C4 LMG 402 I 1 HETATM 8 O O4 LMG . . . DA 22 159.067 225.346 178.358 1 76.12 ? O4 LMG 402 I 1 HETATM 9 C C5 LMG . . . DA 22 157.238 226.598 179.229 1 76.12 ? C5 LMG 402 I 1 HETATM 10 O O5 LMG . . . DA 22 157.702 224.609 180.359 1 76.12 ? O5 LMG 402 I 1 HETATM 11 C C6 LMG . . . DA 22 157.581 225.977 180.59 1 76.12 ? C6 LMG 402 I 1 HETATM 12 O O6 LMG . . . DA 22 157.85 227.852 179.171 1 76.12 ? O6 LMG 402 I 1 HETATM 13 C C7 LMG . . . DA 22 158.217 230.239 179.384 1 76.12 ? C7 LMG 402 I 1 HETATM 14 C C8 LMG . . . DA 22 157.662 231.676 179.294 1 76.12 ? C8 LMG 402 I 1 HETATM 15 C C9 LMG . . . DA 22 158.674 232.616 179.938 1 76.12 ? C9 LMG 402 I 1 HETATM 16 O O7 LMG . . . DA 22 157.616 232.047 177.936 1 76.12 ? O7 LMG 402 I 1 HETATM 17 C C10 LMG . . . DA 22 156.692 232.965 177.56 1 76.12 ? C10 LMG 402 I 1 HETATM 18 O O9 LMG . . . DA 22 155.545 232.865 177.968 1 76.12 ? O9 LMG 402 I 1 HETATM 19 C C11 LMG . . . DA 22 157.275 234.098 176.785 1 76.12 ? C11 LMG 402 I 1 HETATM 20 C C12 LMG . . . DA 22 156.855 235.427 177.378 1 76.12 ? C12 LMG 402 I 1 HETATM 21 C C13 LMG . . . DA 22 157.968 236.089 178.164 1 76.12 ? C13 LMG 402 I 1 HETATM 22 C C14 LMG . . . DA 22 158.584 237.146 177.27 1 76.12 ? C14 LMG 402 I 1 HETATM 23 C C15 LMG . . . DA 22 159.313 238.13 178.144 1 76.12 ? C15 LMG 402 I 1 HETATM 24 C C16 LMG . . . DA 22 160.159 239.038 177.285 1 76.12 ? C16 LMG 402 I 1 HETATM 25 C C17 LMG . . . DA 22 161.183 239.659 178.199 1 76.12 ? C17 LMG 402 I 1 HETATM 26 O O8 LMG . . . DA 22 157.944 233.732 180.36 1 76.12 ? O8 LMG 402 I 1 HETATM 27 C C28 LMG . . . DA 22 158.461 234.412 181.406 1 76.12 ? C28 LMG 402 I 1 HETATM 28 O O10 LMG . . . DA 22 159.625 234.212 181.728 1 76.12 ? O10 LMG 402 I 1 HETATM 29 C C29 LMG . . . DA 22 157.423 235.032 182.28 1 76.12 ? C29 LMG 402 I 1 HETATM 30 C C30 LMG . . . DA 22 156.471 235.887 181.474 1 76.12 ? C30 LMG 402 I 1 HETATM 31 C C31 LMG . . . DA 22 156.813 237.333 181.752 1 76.12 ? C31 LMG 402 I 1 HETATM 32 C C32 LMG . . . DA 22 156.5 237.603 183.217 1 76.12 ? C32 LMG 402 I 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 105 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #