data_8XQX # _model_server_result.job_id RGHEe3PKx79dzxjYR0Wr7A _model_server_result.datetime_utc '2025-03-02 14:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":500}' # _entry.id 8XQX # _exptl.entry_id 8XQX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 29 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XQX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 29 NA N N ? 29 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 200 H CYS 200 1_555 H SG CYS 253 H CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B C LYS 336 B LYS 336 1_555 B N TPO 337 B TPO 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B C TPO 337 B TPO 337 1_555 B N GLU 338 B GLU 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C PHE 345 B PHE 345 1_555 B N TPO 346 B TPO 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C TPO 346 B TPO 346 1_555 B N TPO 347 B TPO 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C TPO 347 B TPO 347 1_555 B N GLU 348 B GLU 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 J C ASP 71 J ASP 71 1_555 J N 4HH 72 J 4HH 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 J C 4HH 72 J 4HH 72 1_555 J N LEU 73 J LEU 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 R C GLU 125 R GLU 125 1_555 R N SEP 126 R SEP 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 R C SEP 126 R SEP 126 1_555 R N GLU 127 R GLU 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 R C ASP 166 R ASP 166 1_555 R N TPO 167 R TPO 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 R C TPO 167 R TPO 167 1_555 R N PRO 168 R PRO 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 S C LEU 83 S LEU 83 1_555 S N SEP 84 S SEP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 S C SEP 84 S SEP 84 1_555 S N SEP 85 S SEP 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 S C SEP 85 S SEP 85 1_555 S N GLU 86 S GLU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 S C ALA 106 S ALA 106 1_555 S N TPO 107 S TPO 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 S C TPO 107 S TPO 107 1_555 S N ASP 108 S ASP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 T C ASP 17 T ASP 17 1_555 T N SEP 18 T SEP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 T C SEP 18 T SEP 18 1_555 T N VAL 19 T VAL 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 T C TYR 27 T TYR 27 1_555 T N SEP 28 T SEP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 T C SEP 28 T SEP 28 1_555 T N GLU 29 T GLU 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OG1 THR 506 A THR 506 1_555 X MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 R SG CYS 58 R CYS 58 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 R SG CYS 61 R CYS 61 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 R SG CYS 69 R CYS 69 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 R SG CYS 72 R CYS 72 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 R SG CYS 116 R CYS 116 1_555 OA ZN ZN . R ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 R SG CYS 306 R CYS 306 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 R SG CYS 309 R CYS 309 1_555 NA ZN ZN . R ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8XQX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 22 LMG A 1 1201 1201 LMG LMG . X 23 MG A 1 1202 1202 MG MG . Y 24 SQD B 1 1201 1201 SQD SQD . Z 22 LMG C 1 1201 1201 LMG LMG . AA 25 DGA D 1 3101 3101 DGA DGA . BA 26 Y01 D 1 3102 3102 Y01 Y01 . CA 24 SQD I 1 401 401 SQD SQD . DA 22 LMG I 1 402 402 LMG LMG . EA 27 DGD I 1 403 403 DGD DGD . FA 22 LMG K 1 301 301 LMG LMG . GA 24 SQD K 1 302 302 SQD SQD . HA 25 DGA L 1 3001 3001 DGA DGA . IA 22 LMG M 1 801 801 LMG LMG . JA 26 Y01 M 1 802 802 Y01 Y01 . KA 27 DGD N 1 201 201 DGD DGD . LA 28 A1LXL P 1 701 701 A1LXL LIG . MA 28 A1LXL P 1 702 702 A1LXL LIG . NA 29 ZN R 1 500 500 ZN ZN . OA 29 ZN R 1 501 501 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id NA _atom_site.label_entity_id 29 _atom_site.Cartn_x 230.805 _atom_site.Cartn_y 236.232 _atom_site.Cartn_z 213.664 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 500 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 503 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #