data_8XS9 # _model_server_result.job_id JiIo0Pt0WEkQh2ixT4TSSQ _model_server_result.datetime_utc '2025-01-31 06:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8XS9 # _exptl.entry_id 8XS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.313 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3-phenyl-2,3-dihydrobenzo[f]chromen-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.66 _cell.angle_gamma 90 _cell.entry_id 8XS9 _cell.length_a 67.996 _cell.length_b 98.514 _cell.length_c 79.999 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N1 DA 2 C DA 2 1_555 D N3 DT 21 D DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N6 DA 2 C DA 2 1_555 D O4 DT 21 D DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N3 DT 3 C DT 3 1_555 D N1 DA 20 D DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C O4 DT 3 C DT 3 1_555 D N6 DA 20 D DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N3 DC 4 C DC 4 1_555 D N1 DG 19 D DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N4 DC 4 C DC 4 1_555 D O6 DG 19 D DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O2 DC 4 C DC 4 1_555 D N2 DG 19 D DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 DG 5 C DG 5 1_555 D N3 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N2 DG 5 C DG 5 1_555 D O2 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O6 DG 5 C DG 5 1_555 D N4 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog11 C O6 DG 6 C DG 6 1_555 D N4 DC 17 D DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog12 C O6 DG 7 C DG 7 1_555 D N4 DC 16 D DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog13 C N4 DC 8 C DC 8 1_555 D O6 DG 15 D DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N1 DA 9 C DA 9 1_555 D N3 DT 14 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N6 DA 9 C DA 9 1_555 D O4 DT 14 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N3 DT 10 C DT 10 1_555 D N1 DA 13 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C O4 DT 10 C DT 10 1_555 D N6 DA 13 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N3 DC 11 C DC 11 1_555 D N1 DG 12 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N4 DC 11 C DC 11 1_555 D O6 DG 12 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C O2 DC 11 C DC 11 1_555 D N2 DG 12 D DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N1 DG 12 C DG 12 1_555 D N3 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N2 DG 12 C DG 12 1_555 D O2 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C O6 DG 12 C DG 12 1_555 D N4 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N3 DC 13 C DC 13 1_555 D N1 DG 10 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N4 DC 13 C DC 13 1_555 D O6 DG 10 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O2 DC 13 C DC 13 1_555 D N2 DG 10 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N1 DG 14 C DG 14 1_555 D N3 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N2 DG 14 C DG 14 1_555 D O2 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O6 DG 14 C DG 14 1_555 D N4 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 DT 15 C DT 15 1_555 D N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C O4 DT 15 C DT 15 1_555 D N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N1 DG 16 C DG 16 1_555 D N3 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N2 DG 16 C DG 16 1_555 D O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C O6 DG 16 C DG 16 1_555 D N4 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N1 DA 17 C DA 17 1_555 D N3 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N6 DA 17 C DA 17 1_555 D O4 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N3 DC 18 C DC 18 1_555 D N1 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C N4 DC 18 C DC 18 1_555 D O6 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C O2 DC 18 C DC 18 1_555 D N2 DG 5 D DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 C N1 DA 19 C DA 19 1_555 D N3 DT 4 D DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C N6 DA 19 C DA 19 1_555 D O4 DT 4 D DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 C N1 DA 20 C DA 20 1_555 D N3 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 C N6 DA 20 C DA 20 1_555 D O4 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 C N1 DG 21 C DG 21 1_555 D N3 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 C N2 DG 21 C DG 21 1_555 D O2 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 C O6 DG 21 C DG 21 1_555 D N4 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C19 H14 O2' _chem_comp.formula_weight 274.313 _chem_comp.id A1LWJ _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-phenyl-2,3-dihydrobenzo[f]chromen-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C21 A1LWJ doub 1 n y C19 C17 A1LWJ sing 2 n y C21 C20 A1LWJ sing 3 n y C17 C14 A1LWJ doub 4 n y C20 C18 A1LWJ doub 5 n y C14 C18 A1LWJ sing 6 n y C14 C08 A1LWJ sing 7 n n O01 C08 A1LWJ sing 8 n n O01 C05 A1LWJ sing 9 n n C09 C05 A1LWJ doub 10 n y C09 C10 A1LWJ sing 11 n y C08 C12 A1LWJ sing 12 n n C05 C03 A1LWJ sing 13 n y C10 C06 A1LWJ doub 14 n y C12 C07 A1LWJ sing 15 n n C03 C07 A1LWJ sing 16 n n C03 C04 A1LWJ doub 17 n y C07 O02 A1LWJ doub 18 n n C06 C04 A1LWJ sing 19 n y C06 C13 A1LWJ sing 20 n y C04 C11 A1LWJ sing 21 n y C13 C16 A1LWJ doub 22 n y C11 C15 A1LWJ doub 23 n y C16 C15 A1LWJ sing 24 n y C12 H1 A1LWJ sing 25 n n C12 H2 A1LWJ sing 26 n n C08 H3 A1LWJ sing 27 n n C09 H4 A1LWJ sing 28 n n C10 H5 A1LWJ sing 29 n n C11 H6 A1LWJ sing 30 n n C13 H7 A1LWJ sing 31 n n C15 H8 A1LWJ sing 32 n n C16 H9 A1LWJ sing 33 n n C17 H10 A1LWJ sing 34 n n C18 H11 A1LWJ sing 35 n n C19 H12 A1LWJ sing 36 n n C20 H13 A1LWJ sing 37 n n C21 H14 A1LWJ sing 38 n n # _atom_sites.entry_id 8XS9 _atom_sites.fract_transf_matrix[1][1] 0.014707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000168 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 DTT A 1 501 1 DTT DTT . F 6 A1LWJ B 1 501 1 A1LWJ BNF . G 7 HOH A 1 601 27 HOH HOH . G 7 HOH A 2 602 30 HOH HOH . G 7 HOH A 3 603 41 HOH HOH . G 7 HOH A 4 604 19 HOH HOH . G 7 HOH A 5 605 6 HOH HOH . G 7 HOH A 6 606 5 HOH HOH . G 7 HOH A 7 607 1 HOH HOH . G 7 HOH A 8 608 12 HOH HOH . G 7 HOH A 9 609 3 HOH HOH . G 7 HOH A 10 610 42 HOH HOH . G 7 HOH A 11 611 29 HOH HOH . G 7 HOH A 12 612 8 HOH HOH . G 7 HOH A 13 613 7 HOH HOH . G 7 HOH A 14 614 28 HOH HOH . G 7 HOH A 15 615 44 HOH HOH . G 7 HOH A 16 616 43 HOH HOH . G 7 HOH A 17 617 47 HOH HOH . H 7 HOH B 1 601 35 HOH HOH . H 7 HOH B 2 602 16 HOH HOH . H 7 HOH B 3 603 22 HOH HOH . H 7 HOH B 4 604 31 HOH HOH . H 7 HOH B 5 605 34 HOH HOH . H 7 HOH B 6 606 20 HOH HOH . H 7 HOH B 7 607 36 HOH HOH . H 7 HOH B 8 608 17 HOH HOH . H 7 HOH B 9 609 33 HOH HOH . H 7 HOH B 10 610 21 HOH HOH . H 7 HOH B 11 611 32 HOH HOH . H 7 HOH B 12 612 39 HOH HOH . H 7 HOH B 13 613 25 HOH HOH . H 7 HOH B 14 614 48 HOH HOH . H 7 HOH B 15 615 40 HOH HOH . H 7 HOH B 16 616 37 HOH HOH . H 7 HOH B 17 617 45 HOH HOH . H 7 HOH B 18 618 18 HOH HOH . H 7 HOH B 19 619 38 HOH HOH . H 7 HOH B 20 620 50 HOH HOH . H 7 HOH B 21 621 46 HOH HOH . H 7 HOH B 22 622 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 A1LWJ . . . F 6 -15.35 -7.171 2.753 1 36.05 ? C12 A1LWJ 501 B 1 HETATM 2 C C14 A1LWJ . . . F 6 -14.01 -6.644 0.778 1 45.84 ? C14 A1LWJ 501 B 1 HETATM 3 C C03 A1LWJ . . . F 6 -16.741 -9.186 2.976 1 38 ? C03 A1LWJ 501 B 1 HETATM 4 C C04 A1LWJ . . . F 6 -17.548 -10.011 3.777 1 43.39 ? C04 A1LWJ 501 B 1 HETATM 5 C C05 A1LWJ . . . F 6 -16.083 -9.736 1.899 1 32.8 ? C05 A1LWJ 501 B 1 HETATM 6 C C06 A1LWJ . . . F 6 -17.671 -11.355 3.471 1 53.79 ? C06 A1LWJ 501 B 1 HETATM 7 C C07 A1LWJ . . . F 6 -16.552 -7.793 3.219 1 37.79 ? C07 A1LWJ 501 B 1 HETATM 8 C C08 A1LWJ . . . F 6 -14.718 -7.649 1.681 1 44.47 ? C08 A1LWJ 501 B 1 HETATM 9 C C09 A1LWJ . . . F 6 -16.216 -11.084 1.6 1 52.43 ? C09 A1LWJ 501 B 1 HETATM 10 C C10 A1LWJ . . . F 6 -17.011 -11.896 2.388 1 66.06 ? C10 A1LWJ 501 B 1 HETATM 11 C C11 A1LWJ . . . F 6 -18.235 -9.519 4.882 1 36.76 ? C11 A1LWJ 501 B 1 HETATM 12 C C13 A1LWJ . . . F 6 -18.461 -12.198 4.238 1 41.78 ? C13 A1LWJ 501 B 1 HETATM 13 C C15 A1LWJ . . . F 6 -19.027 -10.354 5.654 1 31.02 ? C15 A1LWJ 501 B 1 HETATM 14 C C16 A1LWJ . . . F 6 -19.14 -11.695 5.335 1 36.88 ? C16 A1LWJ 501 B 1 HETATM 15 C C17 A1LWJ . . . F 6 -13.159 -7.096 -0.218 1 37.63 ? C17 A1LWJ 501 B 1 HETATM 16 C C18 A1LWJ . . . F 6 -14.224 -5.287 0.951 1 49.34 ? C18 A1LWJ 501 B 1 HETATM 17 C C19 A1LWJ . . . F 6 -12.518 -6.186 -1.042 1 41.93 ? C19 A1LWJ 501 B 1 HETATM 18 C C20 A1LWJ . . . F 6 -13.581 -4.379 0.126 1 50.88 ? C20 A1LWJ 501 B 1 HETATM 19 C C21 A1LWJ . . . F 6 -12.728 -4.828 -0.87 1 43.79 ? C21 A1LWJ 501 B 1 HETATM 20 O O01 A1LWJ . . . F 6 -15.22 -8.904 1.018 1 36.33 ? O01 A1LWJ 501 B 1 HETATM 21 O O02 A1LWJ . . . F 6 -17.35 -7.116 3.766 1 46.6 ? O02 A1LWJ 501 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #