data_8XSC # _model_server_result.job_id LZEq8qXSIcwOU3u7-XjjJg _model_server_result.datetime_utc '2024-11-05 10:41:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xsc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8XSC # _exptl.entry_id 8XSC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8XSC _cell.length_a 79.072 _cell.length_b 79.072 _cell.length_c 147.274 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XSC _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 260 n n O23 HOP1 PNS sing 261 n n P24 O25 PNS sing 262 n n P24 O26 PNS doub 263 n n P24 O27 PNS sing 264 n n O25 HOP2 PNS sing 265 n n O27 C28 PNS sing 266 n n C28 C29 PNS sing 267 n n C28 H282 PNS sing 268 n n C28 H281 PNS sing 269 n n C29 C30 PNS sing 270 n n C29 C31 PNS sing 271 n n C29 C32 PNS sing 272 n n C30 H303 PNS sing 273 n n C30 H302 PNS sing 274 n n C30 H301 PNS sing 275 n n C31 H313 PNS sing 276 n n C31 H312 PNS sing 277 n n C31 H311 PNS sing 278 n n C32 O33 PNS sing 279 n n C32 C34 PNS sing 280 n n C32 H32 PNS sing 281 n n O33 H33 PNS sing 282 n n C34 O35 PNS doub 283 n n C34 N36 PNS sing 284 n n N36 C37 PNS sing 285 n n N36 H36 PNS sing 286 n n C37 C38 PNS sing 287 n n C37 H372 PNS sing 288 n n C37 H371 PNS sing 289 n n C38 C39 PNS sing 290 n n C38 H382 PNS sing 291 n n C38 H381 PNS sing 292 n n C39 O40 PNS doub 293 n n C39 N41 PNS sing 294 n n N41 C42 PNS sing 295 n n N41 H41 PNS sing 296 n n C42 C43 PNS sing 297 n n C42 H422 PNS sing 298 n n C42 H421 PNS sing 299 n n C43 S44 PNS sing 300 n n C43 H431 PNS sing 301 n n C43 H432 PNS sing 302 n n S44 H44 PNS sing 303 n n # _atom_sites.entry_id 8XSC _atom_sites.fract_transf_matrix[1][1] 0.012647 _atom_sites.fract_transf_matrix[1][2] 0.007302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PNS A 1 201 1 PNS PNS . D 3 HOH A 1 301 70 HOH HOH . D 3 HOH A 2 302 75 HOH HOH . D 3 HOH A 3 303 12 HOH HOH . D 3 HOH A 4 304 19 HOH HOH . D 3 HOH A 5 305 37 HOH HOH . D 3 HOH A 6 306 16 HOH HOH . D 3 HOH A 7 307 41 HOH HOH . D 3 HOH A 8 308 27 HOH HOH . D 3 HOH A 9 309 14 HOH HOH . D 3 HOH A 10 310 15 HOH HOH . D 3 HOH A 11 311 34 HOH HOH . D 3 HOH A 12 312 48 HOH HOH . D 3 HOH A 13 313 45 HOH HOH . D 3 HOH A 14 314 26 HOH HOH . D 3 HOH A 15 315 52 HOH HOH . D 3 HOH A 16 316 86 HOH HOH . D 3 HOH A 17 317 49 HOH HOH . D 3 HOH A 18 318 22 HOH HOH . D 3 HOH A 19 319 10 HOH HOH . D 3 HOH A 20 320 63 HOH HOH . D 3 HOH A 21 321 50 HOH HOH . D 3 HOH A 22 322 29 HOH HOH . D 3 HOH A 23 323 28 HOH HOH . D 3 HOH A 24 324 40 HOH HOH . D 3 HOH A 25 325 53 HOH HOH . D 3 HOH A 26 326 30 HOH HOH . D 3 HOH A 27 327 17 HOH HOH . D 3 HOH A 28 328 5 HOH HOH . D 3 HOH A 29 329 18 HOH HOH . D 3 HOH A 30 330 72 HOH HOH . D 3 HOH A 31 331 77 HOH HOH . D 3 HOH A 32 332 24 HOH HOH . D 3 HOH A 33 333 42 HOH HOH . D 3 HOH A 34 334 6 HOH HOH . D 3 HOH A 35 335 47 HOH HOH . D 3 HOH A 36 336 36 HOH HOH . D 3 HOH A 37 337 55 HOH HOH . D 3 HOH A 38 338 46 HOH HOH . D 3 HOH A 39 339 93 HOH HOH . D 3 HOH A 40 340 33 HOH HOH . D 3 HOH A 41 341 74 HOH HOH . D 3 HOH A 42 342 85 HOH HOH . D 3 HOH A 43 343 92 HOH HOH . D 3 HOH A 44 344 78 HOH HOH . D 3 HOH A 45 345 84 HOH HOH . E 3 HOH B 1 201 62 HOH HOH . E 3 HOH B 2 202 68 HOH HOH . E 3 HOH B 3 203 58 HOH HOH . E 3 HOH B 4 204 38 HOH HOH . E 3 HOH B 5 205 9 HOH HOH . E 3 HOH B 6 206 80 HOH HOH . E 3 HOH B 7 207 73 HOH HOH . E 3 HOH B 8 208 64 HOH HOH . E 3 HOH B 9 209 60 HOH HOH . E 3 HOH B 10 210 82 HOH HOH . E 3 HOH B 11 211 3 HOH HOH . E 3 HOH B 12 212 65 HOH HOH . E 3 HOH B 13 213 61 HOH HOH . E 3 HOH B 14 214 79 HOH HOH . E 3 HOH B 15 215 7 HOH HOH . E 3 HOH B 16 216 32 HOH HOH . E 3 HOH B 17 217 11 HOH HOH . E 3 HOH B 18 218 51 HOH HOH . E 3 HOH B 19 219 2 HOH HOH . E 3 HOH B 20 220 69 HOH HOH . E 3 HOH B 21 221 71 HOH HOH . E 3 HOH B 22 222 35 HOH HOH . E 3 HOH B 23 223 8 HOH HOH . E 3 HOH B 24 224 31 HOH HOH . E 3 HOH B 25 225 1 HOH HOH . E 3 HOH B 26 226 25 HOH HOH . E 3 HOH B 27 227 23 HOH HOH . E 3 HOH B 28 228 87 HOH HOH . E 3 HOH B 29 229 59 HOH HOH . E 3 HOH B 30 230 44 HOH HOH . E 3 HOH B 31 231 20 HOH HOH . E 3 HOH B 32 232 21 HOH HOH . E 3 HOH B 33 233 96 HOH HOH . E 3 HOH B 34 234 56 HOH HOH . E 3 HOH B 35 235 67 HOH HOH . E 3 HOH B 36 236 4 HOH HOH . E 3 HOH B 37 237 91 HOH HOH . E 3 HOH B 38 238 43 HOH HOH . E 3 HOH B 39 239 76 HOH HOH . E 3 HOH B 40 240 39 HOH HOH . E 3 HOH B 41 241 54 HOH HOH . E 3 HOH B 42 242 66 HOH HOH . E 3 HOH B 43 243 81 HOH HOH . E 3 HOH B 44 244 13 HOH HOH . E 3 HOH B 45 245 89 HOH HOH . E 3 HOH B 46 246 83 HOH HOH . E 3 HOH B 47 247 57 HOH HOH . E 3 HOH B 48 248 94 HOH HOH . E 3 HOH B 49 249 90 HOH HOH . E 3 HOH B 50 250 95 HOH HOH . E 3 HOH B 51 251 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . C 2 -3.981 -13.451 -0.934 1 22.88 ? O23 PNS 201 A 1 HETATM 2 P P24 PNS . . . C 2 -4.828 -12.172 -0.936 1 27.28 ? P24 PNS 201 A 1 HETATM 3 O O25 PNS . . . C 2 -4.792 -11.368 0.351 1 23.75 ? O25 PNS 201 A 1 HETATM 4 O O26 PNS . . . C 2 -4.626 -11.373 -2.215 1 29.36 ? O26 PNS 201 A 1 HETATM 5 O O27 PNS . . . C 2 -6.371 -12.701 -1.019 1 24.82 ? O27 PNS 201 A 1 HETATM 6 C C28 PNS . . . C 2 -7.496 -11.826 -0.776 1 23.35 ? C28 PNS 201 A 1 HETATM 7 C C29 PNS . . . C 2 -8.664 -12.392 -1.591 1 22.35 ? C29 PNS 201 A 1 HETATM 8 C C30 PNS . . . C 2 -8.107 -12.787 -2.968 1 23.26 ? C30 PNS 201 A 1 HETATM 9 C C31 PNS . . . C 2 -9.161 -13.654 -0.879 1 21.48 ? C31 PNS 201 A 1 HETATM 10 C C32 PNS . . . C 2 -9.849 -11.426 -1.793 1 23.11 ? C32 PNS 201 A 1 HETATM 11 O O33 PNS . . . C 2 -9.438 -10.33 -2.595 1 25.73 ? O33 PNS 201 A 1 HETATM 12 C C34 PNS . . . C 2 -11.061 -12.037 -2.479 1 23.3 ? C34 PNS 201 A 1 HETATM 13 O O35 PNS . . . C 2 -11.924 -12.631 -1.833 1 22.25 ? O35 PNS 201 A 1 HETATM 14 N N36 PNS . . . C 2 -11.138 -11.871 -3.796 1 23.65 ? N36 PNS 201 A 1 HETATM 15 C C37 PNS . . . C 2 -12.211 -12.44 -4.602 1 23.12 ? C37 PNS 201 A 1 HETATM 16 C C38 PNS . . . C 2 -13.267 -11.431 -4.929 1 23.1 ? C38 PNS 201 A 1 HETATM 17 C C39 PNS . . . C 2 -13.974 -10.87 -3.722 1 23.99 ? C39 PNS 201 A 1 HETATM 18 O O40 PNS . . . C 2 -14.788 -11.541 -3.093 1 23.3 ? O40 PNS 201 A 1 HETATM 19 N N41 PNS . . . C 2 -13.745 -9.582 -3.428 1 27.85 ? N41 PNS 201 A 1 HETATM 20 C C42 PNS . . . C 2 -14.514 -8.835 -2.445 1 29.07 ? C42 PNS 201 A 1 HETATM 21 C C43 PNS . . . C 2 -13.89 -8.938 -1.077 1 32.88 ? C43 PNS 201 A 1 HETATM 22 S S44 PNS . . . C 2 -15.009 -8.397 0.24 1 34.23 ? S44 PNS 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #