data_8XTF # _model_server_result.job_id kighYd0Y3yiaJL0Qsmi4Lg _model_server_result.datetime_utc '2024-10-18 05:23:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8XTF # _exptl.entry_id 8XTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.428 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-farnesyl-3,5-dihydroxy-6-methylphthalide-3C _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8XTF _cell.length_a 211.754 _cell.length_b 211.754 _cell.length_c 67.424 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_444 x-y-1/3,-y-2/3,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 -122.256229 -44.949333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H26 O6' _chem_comp.formula_weight 374.428 _chem_comp.id A1LWC _chem_comp.mon_nstd_flag . _chem_comp.name 4-farnesyl-3,5-dihydroxy-6-methylphthalide-3C _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4~{E},8~{E})-4,8-dimethyl-10-[7-methyl-4,6-bis(oxidanyl)-3-oxidanylidene-1~{H}-2-benzofuran-5-yl]deca-4,8-dienoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1LWC doub 1 n y C2 C3 A1LWC sing 2 n y C3 C4 A1LWC doub 3 n y C4 C5 A1LWC sing 4 n y C5 C6 A1LWC doub 5 n y C1 C6 A1LWC sing 6 n y C6 O1 A1LWC sing 7 n n C2 O2 A1LWC sing 8 n n C4 C7 A1LWC sing 9 n n C7 O3 A1LWC sing 10 n n O3 C8 A1LWC sing 11 n n C5 C8 A1LWC sing 12 n n C8 O4 A1LWC doub 13 n n C1 C9 A1LWC sing 14 n n C9 C10 A1LWC sing 15 n n C10 C11 A1LWC doub 16 z n C11 C12 A1LWC sing 17 n n C12 C13 A1LWC sing 18 n n C13 C14 A1LWC sing 19 n n C11 C15 A1LWC sing 20 n n C3 C16 A1LWC sing 21 n n C14 C17 A1LWC doub 22 e n C17 C18 A1LWC sing 23 n n C17 C19 A1LWC sing 24 n n C18 C20 A1LWC sing 25 n n C20 C21 A1LWC sing 26 n n C21 O5 A1LWC sing 27 n n C21 O6 A1LWC doub 28 n n C13 H10 A1LWC sing 29 n n C13 H11 A1LWC sing 30 n n C15 H15 A1LWC sing 31 n n C15 H13 A1LWC sing 32 n n C15 H14 A1LWC sing 33 n n C19 H23 A1LWC sing 34 n n C19 H22 A1LWC sing 35 n n C19 H21 A1LWC sing 36 n n C20 H24 A1LWC sing 37 n n C20 H25 A1LWC sing 38 n n C10 H7 A1LWC sing 39 n n C12 H9 A1LWC sing 40 n n C12 H8 A1LWC sing 41 n n C14 H12 A1LWC sing 42 n n C16 H16 A1LWC sing 43 n n C16 H18 A1LWC sing 44 n n C16 H17 A1LWC sing 45 n n C18 H20 A1LWC sing 46 n n C18 H19 A1LWC sing 47 n n C7 H3 A1LWC sing 48 n n C7 H4 A1LWC sing 49 n n C9 H6 A1LWC sing 50 n n C9 H5 A1LWC sing 51 n n O1 H1 A1LWC sing 52 n n O2 H2 A1LWC sing 53 n n O5 H26 A1LWC sing 54 n n # _atom_sites.entry_id 8XTF _atom_sites.fract_transf_matrix[1][1] 0.004722 _atom_sites.fract_transf_matrix[1][2] 0.002727 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 401 SAH SAH . C 3 A1LWC A 1 402 501 A1LWC YCA . D 4 HOH A 1 501 168 HOH HOH . D 4 HOH A 2 502 187 HOH HOH . D 4 HOH A 3 503 141 HOH HOH . D 4 HOH A 4 504 123 HOH HOH . D 4 HOH A 5 505 156 HOH HOH . D 4 HOH A 6 506 2 HOH HOH . D 4 HOH A 7 507 186 HOH HOH . D 4 HOH A 8 508 135 HOH HOH . D 4 HOH A 9 509 70 HOH HOH . D 4 HOH A 10 510 134 HOH HOH . D 4 HOH A 11 511 46 HOH HOH . D 4 HOH A 12 512 89 HOH HOH . D 4 HOH A 13 513 161 HOH HOH . D 4 HOH A 14 514 121 HOH HOH . D 4 HOH A 15 515 113 HOH HOH . D 4 HOH A 16 516 92 HOH HOH . D 4 HOH A 17 517 84 HOH HOH . D 4 HOH A 18 518 79 HOH HOH . D 4 HOH A 19 519 109 HOH HOH . D 4 HOH A 20 520 138 HOH HOH . D 4 HOH A 21 521 106 HOH HOH . D 4 HOH A 22 522 149 HOH HOH . D 4 HOH A 23 523 48 HOH HOH . D 4 HOH A 24 524 53 HOH HOH . D 4 HOH A 25 525 159 HOH HOH . D 4 HOH A 26 526 62 HOH HOH . D 4 HOH A 27 527 103 HOH HOH . D 4 HOH A 28 528 111 HOH HOH . D 4 HOH A 29 529 83 HOH HOH . D 4 HOH A 30 530 88 HOH HOH . D 4 HOH A 31 531 147 HOH HOH . D 4 HOH A 32 532 137 HOH HOH . D 4 HOH A 33 533 118 HOH HOH . D 4 HOH A 34 534 75 HOH HOH . D 4 HOH A 35 535 167 HOH HOH . D 4 HOH A 36 536 114 HOH HOH . D 4 HOH A 37 537 74 HOH HOH . D 4 HOH A 38 538 184 HOH HOH . D 4 HOH A 39 539 173 HOH HOH . D 4 HOH A 40 540 45 HOH HOH . D 4 HOH A 41 541 40 HOH HOH . D 4 HOH A 42 542 80 HOH HOH . D 4 HOH A 43 543 76 HOH HOH . D 4 HOH A 44 544 170 HOH HOH . D 4 HOH A 45 545 7 HOH HOH . D 4 HOH A 46 546 58 HOH HOH . D 4 HOH A 47 547 183 HOH HOH . D 4 HOH A 48 548 128 HOH HOH . D 4 HOH A 49 549 95 HOH HOH . D 4 HOH A 50 550 33 HOH HOH . D 4 HOH A 51 551 31 HOH HOH . D 4 HOH A 52 552 150 HOH HOH . D 4 HOH A 53 553 64 HOH HOH . D 4 HOH A 54 554 132 HOH HOH . D 4 HOH A 55 555 133 HOH HOH . D 4 HOH A 56 556 177 HOH HOH . D 4 HOH A 57 557 97 HOH HOH . D 4 HOH A 58 558 61 HOH HOH . D 4 HOH A 59 559 56 HOH HOH . D 4 HOH A 60 560 115 HOH HOH . D 4 HOH A 61 561 4 HOH HOH . D 4 HOH A 62 562 26 HOH HOH . D 4 HOH A 63 563 12 HOH HOH . D 4 HOH A 64 564 162 HOH HOH . D 4 HOH A 65 565 145 HOH HOH . D 4 HOH A 66 566 139 HOH HOH . D 4 HOH A 67 567 20 HOH HOH . D 4 HOH A 68 568 36 HOH HOH . D 4 HOH A 69 569 107 HOH HOH . D 4 HOH A 70 570 124 HOH HOH . D 4 HOH A 71 571 16 HOH HOH . D 4 HOH A 72 572 188 HOH HOH . D 4 HOH A 73 573 17 HOH HOH . D 4 HOH A 74 574 185 HOH HOH . D 4 HOH A 75 575 104 HOH HOH . D 4 HOH A 76 576 34 HOH HOH . D 4 HOH A 77 577 119 HOH HOH . D 4 HOH A 78 578 51 HOH HOH . D 4 HOH A 79 579 43 HOH HOH . D 4 HOH A 80 580 23 HOH HOH . D 4 HOH A 81 581 120 HOH HOH . D 4 HOH A 82 582 136 HOH HOH . D 4 HOH A 83 583 77 HOH HOH . D 4 HOH A 84 584 39 HOH HOH . D 4 HOH A 85 585 25 HOH HOH . D 4 HOH A 86 586 10 HOH HOH . D 4 HOH A 87 587 94 HOH HOH . D 4 HOH A 88 588 153 HOH HOH . D 4 HOH A 89 589 87 HOH HOH . D 4 HOH A 90 590 144 HOH HOH . D 4 HOH A 91 591 67 HOH HOH . D 4 HOH A 92 592 131 HOH HOH . D 4 HOH A 93 593 160 HOH HOH . D 4 HOH A 94 594 27 HOH HOH . D 4 HOH A 95 595 55 HOH HOH . D 4 HOH A 96 596 117 HOH HOH . D 4 HOH A 97 597 54 HOH HOH . D 4 HOH A 98 598 166 HOH HOH . D 4 HOH A 99 599 11 HOH HOH . D 4 HOH A 100 600 5 HOH HOH . D 4 HOH A 101 601 57 HOH HOH . D 4 HOH A 102 602 155 HOH HOH . D 4 HOH A 103 603 37 HOH HOH . D 4 HOH A 104 604 32 HOH HOH . D 4 HOH A 105 605 60 HOH HOH . D 4 HOH A 106 606 28 HOH HOH . D 4 HOH A 107 607 9 HOH HOH . D 4 HOH A 108 608 105 HOH HOH . D 4 HOH A 109 609 102 HOH HOH . D 4 HOH A 110 610 86 HOH HOH . D 4 HOH A 111 611 110 HOH HOH . D 4 HOH A 112 612 52 HOH HOH . D 4 HOH A 113 613 13 HOH HOH . D 4 HOH A 114 614 171 HOH HOH . D 4 HOH A 115 615 30 HOH HOH . D 4 HOH A 116 616 140 HOH HOH . D 4 HOH A 117 617 98 HOH HOH . D 4 HOH A 118 618 41 HOH HOH . D 4 HOH A 119 619 154 HOH HOH . D 4 HOH A 120 620 68 HOH HOH . D 4 HOH A 121 621 81 HOH HOH . D 4 HOH A 122 622 96 HOH HOH . D 4 HOH A 123 623 143 HOH HOH . D 4 HOH A 124 624 151 HOH HOH . D 4 HOH A 125 625 50 HOH HOH . D 4 HOH A 126 626 18 HOH HOH . D 4 HOH A 127 627 108 HOH HOH . D 4 HOH A 128 628 22 HOH HOH . D 4 HOH A 129 629 148 HOH HOH . D 4 HOH A 130 630 158 HOH HOH . D 4 HOH A 131 631 78 HOH HOH . D 4 HOH A 132 632 91 HOH HOH . D 4 HOH A 133 633 29 HOH HOH . D 4 HOH A 134 634 59 HOH HOH . D 4 HOH A 135 635 24 HOH HOH . D 4 HOH A 136 636 165 HOH HOH . D 4 HOH A 137 637 19 HOH HOH . D 4 HOH A 138 638 35 HOH HOH . D 4 HOH A 139 639 66 HOH HOH . D 4 HOH A 140 640 90 HOH HOH . D 4 HOH A 141 641 112 HOH HOH . D 4 HOH A 142 642 93 HOH HOH . D 4 HOH A 143 643 15 HOH HOH . D 4 HOH A 144 644 38 HOH HOH . D 4 HOH A 145 645 65 HOH HOH . D 4 HOH A 146 646 130 HOH HOH . D 4 HOH A 147 647 44 HOH HOH . D 4 HOH A 148 648 42 HOH HOH . D 4 HOH A 149 649 116 HOH HOH . D 4 HOH A 150 650 142 HOH HOH . D 4 HOH A 151 651 49 HOH HOH . D 4 HOH A 152 652 6 HOH HOH . D 4 HOH A 153 653 82 HOH HOH . D 4 HOH A 154 654 73 HOH HOH . D 4 HOH A 155 655 72 HOH HOH . D 4 HOH A 156 656 1 HOH HOH . D 4 HOH A 157 657 178 HOH HOH . D 4 HOH A 158 658 14 HOH HOH . D 4 HOH A 159 659 175 HOH HOH . D 4 HOH A 160 660 47 HOH HOH . D 4 HOH A 161 661 63 HOH HOH . D 4 HOH A 162 662 129 HOH HOH . D 4 HOH A 163 663 21 HOH HOH . D 4 HOH A 164 664 8 HOH HOH . D 4 HOH A 165 665 101 HOH HOH . D 4 HOH A 166 666 69 HOH HOH . D 4 HOH A 167 667 71 HOH HOH . D 4 HOH A 168 668 3 HOH HOH . D 4 HOH A 169 669 157 HOH HOH . D 4 HOH A 170 670 176 HOH HOH . D 4 HOH A 171 671 169 HOH HOH . D 4 HOH A 172 672 125 HOH HOH . D 4 HOH A 173 673 179 HOH HOH . D 4 HOH A 174 674 99 HOH HOH . D 4 HOH A 175 675 126 HOH HOH . D 4 HOH A 176 676 127 HOH HOH . D 4 HOH A 177 677 163 HOH HOH . D 4 HOH A 178 678 172 HOH HOH . D 4 HOH A 179 679 181 HOH HOH . D 4 HOH A 180 680 152 HOH HOH . D 4 HOH A 181 681 182 HOH HOH . D 4 HOH A 182 682 180 HOH HOH . D 4 HOH A 183 683 122 HOH HOH . D 4 HOH A 184 684 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1LWC . . . C 3 11.95 -44.261 -8.47 1 20.26 ? C13 A1LWC 402 A 1 HETATM 2 C C15 A1LWC . . . C 3 8.936 -44.859 -6.119 1 18.98 ? C15 A1LWC 402 A 1 HETATM 3 C C17 A1LWC . . . C 3 13.371 -42.326 -9.279 1 17.46 ? C17 A1LWC 402 A 1 HETATM 4 C C19 A1LWC . . . C 3 12.817 -42.262 -10.668 1 19.86 ? C19 A1LWC 402 A 1 HETATM 5 C C20 A1LWC . . . C 3 15.588 -41.123 -9.704 1 26.3 ? C20 A1LWC 402 A 1 HETATM 6 C C1 A1LWC . . . C 3 7.729 -47.031 -9.484 1 16.96 ? C1 A1LWC 402 A 1 HETATM 7 C C10 A1LWC . . . C 3 9.696 -45.866 -8.27 1 22.03 ? C10 A1LWC 402 A 1 HETATM 8 C C11 A1LWC . . . C 3 9.867 -44.987 -7.29 1 22.01 ? C11 A1LWC 402 A 1 HETATM 9 C C12 A1LWC . . . C 3 11.026 -44.035 -7.293 1 21.61 ? C12 A1LWC 402 A 1 HETATM 10 C C14 A1LWC . . . C 3 13.084 -43.293 -8.417 1 16.36 ? C14 A1LWC 402 A 1 HETATM 11 C C16 A1LWC . . . C 3 4.292 -45.654 -10.438 1 19.35 ? C16 A1LWC 402 A 1 HETATM 12 C C18 A1LWC . . . C 3 14.303 -41.212 -8.893 1 19.09 ? C18 A1LWC 402 A 1 HETATM 13 C C2 A1LWC . . . C 3 6.511 -46.342 -9.45 1 20.63 ? C2 A1LWC 402 A 1 HETATM 14 C C21 A1LWC . . . C 3 16.533 -40.018 -9.25 1 36.25 ? C21 A1LWC 402 A 1 HETATM 15 C C3 A1LWC . . . C 3 5.589 -46.419 -10.499 1 22.96 ? C3 A1LWC 402 A 1 HETATM 16 C C4 A1LWC . . . C 3 5.91 -47.21 -11.579 1 21.02 ? C4 A1LWC 402 A 1 HETATM 17 C C5 A1LWC . . . C 3 7.09 -47.915 -11.628 1 21.21 ? C5 A1LWC 402 A 1 HETATM 18 C C6 A1LWC . . . C 3 8.005 -47.835 -10.583 1 16.13 ? C6 A1LWC 402 A 1 HETATM 19 C C7 A1LWC . . . C 3 5.149 -47.498 -12.83 1 22.42 ? C7 A1LWC 402 A 1 HETATM 20 C C8 A1LWC . . . C 3 7.142 -48.658 -12.892 1 22.56 ? C8 A1LWC 402 A 1 HETATM 21 C C9 A1LWC . . . C 3 8.683 -46.975 -8.304 1 20.69 ? C9 A1LWC 402 A 1 HETATM 22 O O1 A1LWC . . . C 3 9.173 -48.512 -10.607 1 20.25 ? O1 A1LWC 402 A 1 HETATM 23 O O2 A1LWC . . . C 3 6.206 -45.545 -8.391 1 22.45 ? O2 A1LWC 402 A 1 HETATM 24 O O3 A1LWC . . . C 3 5.968 -48.457 -13.537 1 22.44 ? O3 A1LWC 402 A 1 HETATM 25 O O4 A1LWC . . . C 3 7.994 -49.353 -13.38 1 22.85 ? O4 A1LWC 402 A 1 HETATM 26 O O5 A1LWC . . . C 3 17.363 -40.296 -8.355 1 32.05 -1 O5 A1LWC 402 A 1 HETATM 27 O O6 A1LWC . . . C 3 16.426 -38.877 -9.782 1 27.29 ? O6 A1LWC 402 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #