data_8XU3 # _model_server_result.job_id a1gOg_ysz0Jc0InzRmIWjA _model_server_result.datetime_utc '2025-06-24 02:56:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8XU3 # _exptl.entry_id 8XU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.109 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description P-NITROPHENOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XU3 _cell.length_a 77.957 _cell.length_b 77.957 _cell.length_c 140.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H5 N O3' _chem_comp.formula_weight 139.109 _chem_comp.id NPO _chem_comp.mon_nstd_flag . _chem_comp.name P-NITROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NPO doub 281 n y C1 C6 NPO sing 282 n y C1 N1 NPO sing 283 n n C2 C3 NPO sing 284 n y C2 H2 NPO sing 285 n n C3 C4 NPO doub 286 n y C3 H3 NPO sing 287 n n C4 C5 NPO sing 288 n y C4 OH NPO sing 289 n n C5 C6 NPO doub 290 n y C5 H5 NPO sing 291 n n C6 H6 NPO sing 292 n n OH HO NPO sing 293 n n N1 O2 NPO sing 294 n n N1 O3 NPO doub 295 n n # _atom_sites.entry_id 8XU3 _atom_sites.fract_transf_matrix[1][1] 0.012828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NPO A 1 301 302 NPO NPO . C 3 A3P A 1 302 307 A3P A3P . D 4 HOH A 1 401 258 HOH HOH . D 4 HOH A 2 402 219 HOH HOH . D 4 HOH A 3 403 243 HOH HOH . D 4 HOH A 4 404 209 HOH HOH . D 4 HOH A 5 405 137 HOH HOH . D 4 HOH A 6 406 95 HOH HOH . D 4 HOH A 7 407 174 HOH HOH . D 4 HOH A 8 408 167 HOH HOH . D 4 HOH A 9 409 223 HOH HOH . D 4 HOH A 10 410 215 HOH HOH . D 4 HOH A 11 411 187 HOH HOH . D 4 HOH A 12 412 166 HOH HOH . D 4 HOH A 13 413 193 HOH HOH . D 4 HOH A 14 414 90 HOH HOH . D 4 HOH A 15 415 147 HOH HOH . D 4 HOH A 16 416 120 HOH HOH . D 4 HOH A 17 417 30 HOH HOH . D 4 HOH A 18 418 179 HOH HOH . D 4 HOH A 19 419 180 HOH HOH . D 4 HOH A 20 420 94 HOH HOH . D 4 HOH A 21 421 135 HOH HOH . D 4 HOH A 22 422 28 HOH HOH . D 4 HOH A 23 423 8 HOH HOH . D 4 HOH A 24 424 262 HOH HOH . D 4 HOH A 25 425 144 HOH HOH . D 4 HOH A 26 426 29 HOH HOH . D 4 HOH A 27 427 70 HOH HOH . D 4 HOH A 28 428 48 HOH HOH . D 4 HOH A 29 429 98 HOH HOH . D 4 HOH A 30 430 164 HOH HOH . D 4 HOH A 31 431 83 HOH HOH . D 4 HOH A 32 432 112 HOH HOH . D 4 HOH A 33 433 194 HOH HOH . D 4 HOH A 34 434 139 HOH HOH . D 4 HOH A 35 435 102 HOH HOH . D 4 HOH A 36 436 121 HOH HOH . D 4 HOH A 37 437 250 HOH HOH . D 4 HOH A 38 438 197 HOH HOH . D 4 HOH A 39 439 20 HOH HOH . D 4 HOH A 40 440 117 HOH HOH . D 4 HOH A 41 441 183 HOH HOH . D 4 HOH A 42 442 54 HOH HOH . D 4 HOH A 43 443 6 HOH HOH . D 4 HOH A 44 444 80 HOH HOH . D 4 HOH A 45 445 44 HOH HOH . D 4 HOH A 46 446 119 HOH HOH . D 4 HOH A 47 447 279 HOH HOH . D 4 HOH A 48 448 51 HOH HOH . D 4 HOH A 49 449 92 HOH HOH . D 4 HOH A 50 450 113 HOH HOH . D 4 HOH A 51 451 33 HOH HOH . D 4 HOH A 52 452 16 HOH HOH . D 4 HOH A 53 453 57 HOH HOH . D 4 HOH A 54 454 109 HOH HOH . D 4 HOH A 55 455 123 HOH HOH . D 4 HOH A 56 456 85 HOH HOH . D 4 HOH A 57 457 146 HOH HOH . D 4 HOH A 58 458 175 HOH HOH . D 4 HOH A 59 459 38 HOH HOH . D 4 HOH A 60 460 176 HOH HOH . D 4 HOH A 61 461 89 HOH HOH . D 4 HOH A 62 462 134 HOH HOH . D 4 HOH A 63 463 24 HOH HOH . D 4 HOH A 64 464 106 HOH HOH . D 4 HOH A 65 465 173 HOH HOH . D 4 HOH A 66 466 152 HOH HOH . D 4 HOH A 67 467 91 HOH HOH . D 4 HOH A 68 468 138 HOH HOH . D 4 HOH A 69 469 149 HOH HOH . D 4 HOH A 70 470 22 HOH HOH . D 4 HOH A 71 471 35 HOH HOH . D 4 HOH A 72 472 64 HOH HOH . D 4 HOH A 73 473 15 HOH HOH . D 4 HOH A 74 474 127 HOH HOH . D 4 HOH A 75 475 111 HOH HOH . D 4 HOH A 76 476 34 HOH HOH . D 4 HOH A 77 477 97 HOH HOH . D 4 HOH A 78 478 100 HOH HOH . D 4 HOH A 79 479 190 HOH HOH . D 4 HOH A 80 480 37 HOH HOH . D 4 HOH A 81 481 42 HOH HOH . D 4 HOH A 82 482 49 HOH HOH . D 4 HOH A 83 483 163 HOH HOH . D 4 HOH A 84 484 142 HOH HOH . D 4 HOH A 85 485 242 HOH HOH . D 4 HOH A 86 486 232 HOH HOH . D 4 HOH A 87 487 195 HOH HOH . D 4 HOH A 88 488 291 HOH HOH . D 4 HOH A 89 489 5 HOH HOH . D 4 HOH A 90 490 96 HOH HOH . D 4 HOH A 91 491 4 HOH HOH . D 4 HOH A 92 492 23 HOH HOH . D 4 HOH A 93 493 11 HOH HOH . D 4 HOH A 94 494 47 HOH HOH . D 4 HOH A 95 495 61 HOH HOH . D 4 HOH A 96 496 129 HOH HOH . D 4 HOH A 97 497 93 HOH HOH . D 4 HOH A 98 498 288 HOH HOH . D 4 HOH A 99 499 9 HOH HOH . D 4 HOH A 100 500 74 HOH HOH . D 4 HOH A 101 501 81 HOH HOH . D 4 HOH A 102 502 214 HOH HOH . D 4 HOH A 103 503 12 HOH HOH . D 4 HOH A 104 504 55 HOH HOH . D 4 HOH A 105 505 68 HOH HOH . D 4 HOH A 106 506 103 HOH HOH . D 4 HOH A 107 507 69 HOH HOH . D 4 HOH A 108 508 14 HOH HOH . D 4 HOH A 109 509 126 HOH HOH . D 4 HOH A 110 510 18 HOH HOH . D 4 HOH A 111 511 3 HOH HOH . D 4 HOH A 112 512 1 HOH HOH . D 4 HOH A 113 513 108 HOH HOH . D 4 HOH A 114 514 282 HOH HOH . D 4 HOH A 115 515 230 HOH HOH . D 4 HOH A 116 516 170 HOH HOH . D 4 HOH A 117 517 71 HOH HOH . D 4 HOH A 118 518 17 HOH HOH . D 4 HOH A 119 519 72 HOH HOH . D 4 HOH A 120 520 158 HOH HOH . D 4 HOH A 121 521 79 HOH HOH . D 4 HOH A 122 522 40 HOH HOH . D 4 HOH A 123 523 124 HOH HOH . D 4 HOH A 124 524 276 HOH HOH . D 4 HOH A 125 525 293 HOH HOH . D 4 HOH A 126 526 107 HOH HOH . D 4 HOH A 127 527 43 HOH HOH . D 4 HOH A 128 528 32 HOH HOH . D 4 HOH A 129 529 13 HOH HOH . D 4 HOH A 130 530 25 HOH HOH . D 4 HOH A 131 531 7 HOH HOH . D 4 HOH A 132 532 41 HOH HOH . D 4 HOH A 133 533 212 HOH HOH . D 4 HOH A 134 534 199 HOH HOH . D 4 HOH A 135 535 260 HOH HOH . D 4 HOH A 136 536 26 HOH HOH . D 4 HOH A 137 537 2 HOH HOH . D 4 HOH A 138 538 154 HOH HOH . D 4 HOH A 139 539 99 HOH HOH . D 4 HOH A 140 540 150 HOH HOH . D 4 HOH A 141 541 76 HOH HOH . D 4 HOH A 142 542 21 HOH HOH . D 4 HOH A 143 543 45 HOH HOH . D 4 HOH A 144 544 192 HOH HOH . D 4 HOH A 145 545 269 HOH HOH . D 4 HOH A 146 546 141 HOH HOH . D 4 HOH A 147 547 157 HOH HOH . D 4 HOH A 148 548 240 HOH HOH . D 4 HOH A 149 549 63 HOH HOH . D 4 HOH A 150 550 88 HOH HOH . D 4 HOH A 151 551 281 HOH HOH . D 4 HOH A 152 552 249 HOH HOH . D 4 HOH A 153 553 136 HOH HOH . D 4 HOH A 154 554 275 HOH HOH . D 4 HOH A 155 555 131 HOH HOH . D 4 HOH A 156 556 156 HOH HOH . D 4 HOH A 157 557 118 HOH HOH . D 4 HOH A 158 558 27 HOH HOH . D 4 HOH A 159 559 10 HOH HOH . D 4 HOH A 160 560 202 HOH HOH . D 4 HOH A 161 561 256 HOH HOH . D 4 HOH A 162 562 56 HOH HOH . D 4 HOH A 163 563 101 HOH HOH . D 4 HOH A 164 564 216 HOH HOH . D 4 HOH A 165 565 221 HOH HOH . D 4 HOH A 166 566 36 HOH HOH . D 4 HOH A 167 567 207 HOH HOH . D 4 HOH A 168 568 201 HOH HOH . D 4 HOH A 169 569 297 HOH HOH . D 4 HOH A 170 570 162 HOH HOH . D 4 HOH A 171 571 182 HOH HOH . D 4 HOH A 172 572 50 HOH HOH . D 4 HOH A 173 573 115 HOH HOH . D 4 HOH A 174 574 172 HOH HOH . D 4 HOH A 175 575 234 HOH HOH . D 4 HOH A 176 576 226 HOH HOH . D 4 HOH A 177 577 236 HOH HOH . D 4 HOH A 178 578 46 HOH HOH . D 4 HOH A 179 579 267 HOH HOH . D 4 HOH A 180 580 188 HOH HOH . D 4 HOH A 181 581 265 HOH HOH . D 4 HOH A 182 582 39 HOH HOH . D 4 HOH A 183 583 272 HOH HOH . D 4 HOH A 184 584 295 HOH HOH . D 4 HOH A 185 585 148 HOH HOH . D 4 HOH A 186 586 19 HOH HOH . D 4 HOH A 187 587 203 HOH HOH . D 4 HOH A 188 588 238 HOH HOH . D 4 HOH A 189 589 289 HOH HOH . D 4 HOH A 190 590 274 HOH HOH . D 4 HOH A 191 591 84 HOH HOH . D 4 HOH A 192 592 264 HOH HOH . D 4 HOH A 193 593 259 HOH HOH . D 4 HOH A 194 594 225 HOH HOH . D 4 HOH A 195 595 204 HOH HOH . D 4 HOH A 196 596 177 HOH HOH . D 4 HOH A 197 597 104 HOH HOH . D 4 HOH A 198 598 78 HOH HOH . D 4 HOH A 199 599 168 HOH HOH . D 4 HOH A 200 600 75 HOH HOH . D 4 HOH A 201 601 235 HOH HOH . D 4 HOH A 202 602 82 HOH HOH . D 4 HOH A 203 603 254 HOH HOH . D 4 HOH A 204 604 52 HOH HOH . D 4 HOH A 205 605 251 HOH HOH . D 4 HOH A 206 606 270 HOH HOH . D 4 HOH A 207 607 116 HOH HOH . D 4 HOH A 208 608 217 HOH HOH . D 4 HOH A 209 609 122 HOH HOH . D 4 HOH A 210 610 273 HOH HOH . D 4 HOH A 211 611 151 HOH HOH . D 4 HOH A 212 612 218 HOH HOH . D 4 HOH A 213 613 271 HOH HOH . D 4 HOH A 214 614 213 HOH HOH . D 4 HOH A 215 615 237 HOH HOH . D 4 HOH A 216 616 205 HOH HOH . D 4 HOH A 217 617 185 HOH HOH . D 4 HOH A 218 618 191 HOH HOH . D 4 HOH A 219 619 229 HOH HOH . D 4 HOH A 220 620 165 HOH HOH . D 4 HOH A 221 621 241 HOH HOH . D 4 HOH A 222 622 224 HOH HOH . D 4 HOH A 223 623 160 HOH HOH . D 4 HOH A 224 624 299 HOH HOH . D 4 HOH A 225 625 208 HOH HOH . D 4 HOH A 226 626 233 HOH HOH . D 4 HOH A 227 627 268 HOH HOH . D 4 HOH A 228 628 198 HOH HOH . D 4 HOH A 229 629 161 HOH HOH . D 4 HOH A 230 630 285 HOH HOH . D 4 HOH A 231 631 110 HOH HOH . D 4 HOH A 232 632 284 HOH HOH . D 4 HOH A 233 633 220 HOH HOH . D 4 HOH A 234 634 244 HOH HOH . D 4 HOH A 235 635 105 HOH HOH . D 4 HOH A 236 636 77 HOH HOH . D 4 HOH A 237 637 228 HOH HOH . D 4 HOH A 238 638 283 HOH HOH . D 4 HOH A 239 639 245 HOH HOH . D 4 HOH A 240 640 231 HOH HOH . D 4 HOH A 241 641 65 HOH HOH . D 4 HOH A 242 642 253 HOH HOH . D 4 HOH A 243 643 210 HOH HOH . D 4 HOH A 244 644 31 HOH HOH . D 4 HOH A 245 645 128 HOH HOH . D 4 HOH A 246 646 255 HOH HOH . D 4 HOH A 247 647 145 HOH HOH . D 4 HOH A 248 648 140 HOH HOH . D 4 HOH A 249 649 239 HOH HOH . D 4 HOH A 250 650 266 HOH HOH . D 4 HOH A 251 651 60 HOH HOH . D 4 HOH A 252 652 132 HOH HOH . D 4 HOH A 253 653 257 HOH HOH . D 4 HOH A 254 654 248 HOH HOH . D 4 HOH A 255 655 286 HOH HOH . D 4 HOH A 256 656 247 HOH HOH . D 4 HOH A 257 657 86 HOH HOH . D 4 HOH A 258 658 66 HOH HOH . D 4 HOH A 259 659 211 HOH HOH . D 4 HOH A 260 660 277 HOH HOH . D 4 HOH A 261 661 181 HOH HOH . D 4 HOH A 262 662 87 HOH HOH . D 4 HOH A 263 663 153 HOH HOH . D 4 HOH A 264 664 222 HOH HOH . D 4 HOH A 265 665 155 HOH HOH . D 4 HOH A 266 666 114 HOH HOH . D 4 HOH A 267 667 261 HOH HOH . D 4 HOH A 268 668 287 HOH HOH . D 4 HOH A 269 669 125 HOH HOH . D 4 HOH A 270 670 58 HOH HOH . D 4 HOH A 271 671 159 HOH HOH . D 4 HOH A 272 672 143 HOH HOH . D 4 HOH A 273 673 290 HOH HOH . D 4 HOH A 274 674 59 HOH HOH . D 4 HOH A 275 675 178 HOH HOH . D 4 HOH A 276 676 263 HOH HOH . D 4 HOH A 277 677 298 HOH HOH . D 4 HOH A 278 678 184 HOH HOH . D 4 HOH A 279 679 169 HOH HOH . D 4 HOH A 280 680 53 HOH HOH . D 4 HOH A 281 681 62 HOH HOH . D 4 HOH A 282 682 200 HOH HOH . D 4 HOH A 283 683 227 HOH HOH . D 4 HOH A 284 684 130 HOH HOH . D 4 HOH A 285 685 186 HOH HOH . D 4 HOH A 286 686 296 HOH HOH . D 4 HOH A 287 687 171 HOH HOH . D 4 HOH A 288 688 67 HOH HOH . D 4 HOH A 289 689 73 HOH HOH . D 4 HOH A 290 690 246 HOH HOH . D 4 HOH A 291 691 196 HOH HOH . D 4 HOH A 292 692 133 HOH HOH . D 4 HOH A 293 693 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPO . . . B 2 -24.884 2.862 -12.574 1 23.1 ? C1 NPO 301 A 1 HETATM 2 C C2 NPO . . . B 2 -23.547 3.167 -12.82 1 23.23 ? C2 NPO 301 A 1 HETATM 3 C C3 NPO . . . B 2 -22.776 2.245 -13.495 1 25.54 ? C3 NPO 301 A 1 HETATM 4 C C4 NPO . . . B 2 -23.329 1.045 -13.924 1 26.9 ? C4 NPO 301 A 1 HETATM 5 C C5 NPO . . . B 2 -24.669 0.761 -13.683 1 25.37 ? C5 NPO 301 A 1 HETATM 6 C C6 NPO . . . B 2 -25.459 1.672 -13.012 1 27.26 ? C6 NPO 301 A 1 HETATM 7 O OH NPO . . . B 2 -22.522 0.161 -14.595 1 54.92 ? OH NPO 301 A 1 HETATM 8 N N1 NPO . . . B 2 -25.717 3.841 -11.875 1 34.2 ? N1 NPO 301 A 1 HETATM 9 O O2 NPO . . . B 2 -25.239 4.946 -11.628 1 27.85 ? O2 NPO 301 A 1 HETATM 10 O O3 NPO . . . B 2 -26.844 3.502 -11.542 1 26.95 ? O3 NPO 301 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #