data_8XUQ
#
_model_server_result.job_id            zMAyY-RtL8JtzxWaPYMCUQ 
_model_server_result.datetime_utc      '2024-11-05 00:36:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xuq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":902}' 
#
_entry.id    8XUQ 
#
_exptl.entry_id    8XUQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8XUQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 IHP A 1 901 902 IHP IHP . 
F 3 ADP A 1 902 903 ADP ADP . 
G 2 IHP E 1 901 902 IHP IHP . 
H 3 ADP E 1 902 903 ADP ADP . 
I 2 IHP F 1 901 902 IHP IHP . 
J 3 ADP F 1 902 903 ADP ADP . 
K 2 IHP G 1 901 902 IHP IHP . 
L 3 ADP G 1 902 903 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . F 3 108.693 115.448 109.954 1 75.47 ? PB ADP 902 A 1 
HETATM 2 O O1B ADP . . . F 3 108.605 114.539 108.753 1 77.1 ? O1B ADP 902 A 1 
HETATM 3 O O2B ADP . . . F 3 107.759 116.627 109.875 1 79.27 ? O2B ADP 902 A 1 
HETATM 4 O O3B ADP . . . F 3 108.692 114.741 111.287 1 69.96 ? O3B ADP 902 A 1 
HETATM 5 P PA ADP . . . F 3 110.513 117.581 110.336 1 67.54 ? PA ADP 902 A 1 
HETATM 6 O O1A ADP . . . F 3 109.367 118.508 110.022 1 75.96 ? O1A ADP 902 A 1 
HETATM 7 O O2A ADP . . . F 3 110.99 117.457 111.76 1 73.16 ? O2A ADP 902 A 1 
HETATM 8 O O3A ADP . . . F 3 110.164 116.093 109.827 1 71.85 ? O3A ADP 902 A 1 
HETATM 9 O O5' ADP . . . F 3 111.755 117.985 109.394 1 69.81 ? O5' ADP 902 A 1 
HETATM 10 C C5' ADP . . . F 3 113.104 117.879 109.845 1 69.8 ? C5' ADP 902 A 1 
HETATM 11 C C4' ADP . . . F 3 113.808 119.228 109.778 1 70.74 ? C4' ADP 902 A 1 
HETATM 12 O O4' ADP . . . F 3 114.094 119.625 108.435 1 67.82 ? O4' ADP 902 A 1 
HETATM 13 C C3' ADP . . . F 3 112.972 120.345 110.388 1 76.55 ? C3' ADP 902 A 1 
HETATM 14 O O3' ADP . . . F 3 113.475 120.7 111.678 1 82.84 ? O3' ADP 902 A 1 
HETATM 15 C C2' ADP . . . F 3 113.093 121.509 109.427 1 71.83 ? C2' ADP 902 A 1 
HETATM 16 O O2' ADP . . . F 3 113.554 122.691 110.086 1 72.3 ? O2' ADP 902 A 1 
HETATM 17 C C1' ADP . . . F 3 114.101 121.053 108.387 1 70.7 ? C1' ADP 902 A 1 
HETATM 18 N N9 ADP . . . F 3 113.747 121.58 107.047 1 76.43 ? N9 ADP 902 A 1 
HETATM 19 C C8 ADP . . . F 3 114.47 122.492 106.369 1 79.04 ? C8 ADP 902 A 1 
HETATM 20 N N7 ADP . . . F 3 113.888 122.779 105.178 1 75.55 ? N7 ADP 902 A 1 
HETATM 21 C C5 ADP . . . F 3 112.77 122.043 105.087 1 75.78 ? C5 ADP 902 A 1 
HETATM 22 C C6 ADP . . . F 3 111.697 121.869 104.09 1 72.59 ? C6 ADP 902 A 1 
HETATM 23 N N6 ADP . . . F 3 111.706 122.557 102.927 1 71.18 ? N6 ADP 902 A 1 
HETATM 24 N N1 ADP . . . F 3 110.709 121.002 104.389 1 77.23 ? N1 ADP 902 A 1 
HETATM 25 C C2 ADP . . . F 3 110.681 120.308 105.541 1 79.98 ? C2 ADP 902 A 1 
HETATM 26 N N3 ADP . . . F 3 111.627 120.421 106.489 1 78.84 ? N3 ADP 902 A 1 
HETATM 27 C C4 ADP . . . F 3 112.676 121.257 106.324 1 77.43 ? C4 ADP 902 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#