data_8XUV
#
_model_server_result.job_id            EfbE1an1ii_rAQV3eClgNQ 
_model_server_result.datetime_utc      '2024-12-22 11:20:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xuv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":902}' 
#
_entry.id    8XUV 
#
_exptl.entry_id    8XUV 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XUV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8XUV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
? 3 FA N N 
? 3 HA N N 
? 3 JA N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8XUV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 IHP A 1 901 897 IHP IHP . 
N 3 ADP A 1 902 901 ADP ADP . 
O 2 IHP B 1 901 902 IHP IHP . 
P 3 ADP B 1 902 903 ADP ADP . 
Q 2 IHP C 1 901 902 IHP IHP . 
R 3 ADP C 1 902 903 ADP ADP . 
S 2 IHP D 1 901 899 IHP IHP . 
T 3 ADP D 1 902 901 ADP ADP . 
U 2 IHP E 1 901 902 IHP IHP . 
V 3 ADP E 1 902 903 ADP ADP . 
W 2 IHP F 1 901 902 IHP IHP . 
X 3 ADP F 1 902 903 ADP ADP . 
Y 2 IHP G 1 901 897 IHP IHP . 
Z 3 ADP G 1 902 901 ADP ADP . 
AA 2 IHP H 1 901 899 IHP IHP . 
BA 3 ADP H 1 902 901 ADP ADP . 
CA 2 IHP I 1 901 899 IHP IHP . 
DA 3 ADP I 1 902 901 ADP ADP . 
EA 2 IHP J 1 901 899 IHP IHP . 
FA 3 ADP J 1 902 901 ADP ADP . 
GA 2 IHP K 1 901 899 IHP IHP . 
HA 3 ADP K 1 902 901 ADP ADP . 
IA 2 IHP L 1 901 899 IHP IHP . 
JA 3 ADP L 1 902 901 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . V 3 109.281 56.714 169.542 1 79.77 0 PB ADP 902 E 1 
HETATM 2 O O1B ADP . . . V 3 110.443 55.771 169.565 1 79.77 -1 O1B ADP 902 E 1 
HETATM 3 O O2B ADP . . . V 3 109.702 58.132 169.799 1 79.77 0 O2B ADP 902 E 1 
HETATM 4 O O3B ADP . . . V 3 108.15 56.257 170.402 1 79.77 0 O3B ADP 902 E 1 
HETATM 5 P PA ADP . . . V 3 107.319 57.336 167.447 1 79.77 0 PA ADP 902 E 1 
HETATM 6 O O1A ADP . . . V 3 107.714 58.166 166.272 1 79.77 0 O1A ADP 902 E 1 
HETATM 7 O O2A ADP . . . V 3 106.51 57.968 168.528 1 79.77 -1 O2A ADP 902 E 1 
HETATM 8 O O3A ADP . . . V 3 108.646 56.696 168.074 1 79.77 0 O3A ADP 902 E 1 
HETATM 9 O O5' ADP . . . V 3 106.577 56.01 166.941 1 79.77 0 O5' ADP 902 E 1 
HETATM 10 C C5' ADP . . . V 3 105.182 56.071 166.558 1 79.77 0 C5' ADP 902 E 1 
HETATM 11 C C4' ADP . . . V 3 105.045 56.85 165.277 1 79.77 0 C4' ADP 902 E 1 
HETATM 12 O O4' ADP . . . V 3 103.865 56.391 164.569 1 79.77 0 O4' ADP 902 E 1 
HETATM 13 C C3' ADP . . . V 3 104.829 58.357 165.439 1 79.77 0 C3' ADP 902 E 1 
HETATM 14 O O3' ADP . . . V 3 105.246 59.051 164.272 1 79.77 0 O3' ADP 902 E 1 
HETATM 15 C C2' ADP . . . V 3 103.314 58.414 165.626 1 79.77 0 C2' ADP 902 E 1 
HETATM 16 O O2' ADP . . . V 3 102.765 59.687 165.37 1 79.77 0 O2' ADP 902 E 1 
HETATM 17 C C1' ADP . . . V 3 102.865 57.384 164.598 1 79.77 0 C1' ADP 902 E 1 
HETATM 18 N N9 ADP . . . V 3 101.603 56.751 164.951 1 79.77 0 N9 ADP 902 E 1 
HETATM 19 C C8 ADP . . . V 3 100.419 56.826 164.262 1 79.77 0 C8 ADP 902 E 1 
HETATM 20 N N7 ADP . . . V 3 99.45 56.153 164.829 1 79.77 0 N7 ADP 902 E 1 
HETATM 21 C C5 ADP . . . V 3 100.026 55.613 165.968 1 79.77 0 C5 ADP 902 E 1 
HETATM 22 C C6 ADP . . . V 3 99.51 54.8 166.993 1 79.77 0 C6 ADP 902 E 1 
HETATM 23 N N6 ADP . . . V 3 98.252 54.378 167.028 1 79.77 0 N6 ADP 902 E 1 
HETATM 24 N N1 ADP . . . V 3 100.351 54.437 167.989 1 79.77 0 N1 ADP 902 E 1 
HETATM 25 C C2 ADP . . . V 3 101.616 54.869 167.941 1 79.77 0 C2 ADP 902 E 1 
HETATM 26 N N3 ADP . . . V 3 102.211 55.633 167.03 1 79.77 0 N3 ADP 902 E 1 
HETATM 27 C C4 ADP . . . V 3 101.352 55.98 166.059 1 79.77 0 C4 ADP 902 E 1 
#
_model_server_stats.io_time_ms              213 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    507 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#