data_8XV2
#
_model_server_result.job_id            X1RBR8ctjorqBFjR7rewYw 
_model_server_result.datetime_utc      '2024-10-18 16:19:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xv2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    8XV2 
#
_exptl.entry_id    8XV2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              265.355 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XV2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XV2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H17 N4 O S 1' 
_chem_comp.formula_weight    265.355 
_chem_comp.id                VIB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'THIAMIN;VITAMIN B1' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM2 C2A VIB sing 374 n n 
CM2 HM21 VIB sing 375 n n 
CM2 HM22 VIB sing 376 n n 
CM2 HM23 VIB sing 377 n n 
N4A C4A VIB sing 378 n n 
N4A H4A1 VIB sing 379 n n 
N4A H4A2 VIB sing 380 n n 
CM4 C4 VIB sing 381 n n 
CM4 HM41 VIB sing 382 n n 
CM4 HM42 VIB sing 383 n n 
CM4 HM43 VIB sing 384 n n 
O1 C7 VIB sing 385 n n 
O1 HO1 VIB sing 386 n n 
C7 C6 VIB sing 387 n n 
C7 HC71 VIB sing 388 n n 
C7 HC72 VIB sing 389 n n 
C6 C5 VIB sing 390 n n 
C6 HC61 VIB sing 391 n n 
C6 HC62 VIB sing 392 n n 
C2 S1 VIB sing 393 n y 
C2 N3 VIB doub 394 n y 
C2 HC2 VIB sing 395 n n 
S1 C5 VIB sing 396 n y 
C5 C4 VIB doub 397 n y 
C4 N3 VIB sing 398 n y 
N3 C7A VIB sing 399 n n 
C7A C5A VIB sing 400 n n 
C7A H7A1 VIB sing 401 n n 
C7A H7A2 VIB sing 402 n n 
C4A N3A VIB sing 403 n y 
C4A C5A VIB doub 404 n y 
N3A C2A VIB doub 405 n y 
C2A N1A VIB sing 406 n y 
N1A C6A VIB doub 407 n y 
C6A C5A VIB sing 408 n y 
C6A H6AC VIB sing 409 n n 
#
_atom_sites.entry_id                     8XV2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           VIB 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       VIB 
_pdbx_nonpoly_scheme.auth_mon_id      VIB 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM2 VIB . . . B 2 127.645 133.573 166.214 1 74.29 ? CM2 VIB 501 A 1 
HETATM 2 N N4A VIB . . . B 2 131.155 130.259 167.097 1 74.29 ? N4A VIB 501 A 1 
HETATM 3 C CM4 VIB . . . B 2 134.523 135.205 168.337 1 74.29 ? CM4 VIB 501 A 1 
HETATM 4 O O1 VIB . . . B 2 137.205 138.094 164.414 1 74.29 ? O1 VIB 501 A 1 
HETATM 5 C C7 VIB . . . B 2 136.214 137.09 164.428 1 74.29 ? C7 VIB 501 A 1 
HETATM 6 C C6 VIB . . . B 2 136.053 136.545 165.857 1 74.29 ? C6 VIB 501 A 1 
HETATM 7 C C2 VIB . . . B 2 134.263 133.2 165.126 1 74.29 ? C2 VIB 501 A 1 
HETATM 8 S S1 VIB . . . B 2 135.119 134.369 164.601 1 74.29 ? S1 VIB 501 A 1 
HETATM 9 C C5 VIB . . . B 2 135.295 135.253 165.809 1 74.29 ? C5 VIB 501 A 1 
HETATM 10 C C4 VIB . . . B 2 134.6 134.63 166.913 1 74.29 ? C4 VIB 501 A 1 
HETATM 11 N N3 VIB . . . B 2 133.996 133.447 166.499 1 74.29 ? N3 VIB 501 A 1 
HETATM 12 C C7A VIB . . . B 2 133.205 132.533 167.351 1 74.29 ? C7A VIB 501 A 1 
HETATM 13 C C4A VIB . . . B 2 130.759 131.643 166.932 1 74.29 ? C4A VIB 501 A 1 
HETATM 14 N N3A VIB . . . B 2 129.492 131.943 166.67 1 74.29 ? N3A VIB 501 A 1 
HETATM 15 C C2A VIB . . . B 2 129.112 133.228 166.515 1 74.29 ? C2A VIB 501 A 1 
HETATM 16 N N1A VIB . . . B 2 130.029 134.219 166.627 1 74.29 ? N1A VIB 501 A 1 
HETATM 17 C C6A VIB . . . B 2 131.291 133.924 166.891 1 74.29 ? C6A VIB 501 A 1 
HETATM 18 C C5A VIB . . . B 2 131.68 132.635 167.044 1 74.29 ? C5A VIB 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#