data_8XV5 # _model_server_result.job_id owILFpda_b0mBuT-90wVkg _model_server_result.datetime_utc '2024-11-09 23:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8XV5 # _exptl.entry_id 8XV5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 168.193 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XV5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H12 N2 O2' _chem_comp.formula_weight 168.193 _chem_comp.id PXM _chem_comp.mon_nstd_flag . _chem_comp.name 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PYRIDOXAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PXM doub 275 n y N1 C6 PXM sing 276 n y C2 C2A PXM sing 277 n n C2 C3 PXM sing 278 n y C2A H2A1 PXM sing 279 n n C2A H2A2 PXM sing 280 n n C2A H2A3 PXM sing 281 n n C3 O3 PXM sing 282 n n C3 C4 PXM doub 283 n y O3 HO3 PXM sing 284 n n C4 C5 PXM sing 285 n y C4 C4A PXM sing 286 n n C5 C5A PXM sing 287 n n C5 C6 PXM doub 288 n y C5A O5 PXM sing 289 n n C5A H5A1 PXM sing 290 n n C5A H5A2 PXM sing 291 n n O5 HO5 PXM sing 292 n n C6 H6 PXM sing 293 n n C4A N4 PXM sing 294 n n C4A H4A1 PXM sing 295 n n C4A H4A2 PXM sing 296 n n N4 HN41 PXM sing 297 n n N4 HN42 PXM sing 298 n n # _atom_sites.entry_id 8XV5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PXM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id PXM _pdbx_nonpoly_scheme.auth_mon_id PXM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PXM . . . B 2 141.952 127.998 107.178 1 71.05 ? N1 PXM 501 A 1 HETATM 2 C C2 PXM . . . B 2 141.414 129.079 107.703 1 71.05 ? C2 PXM 501 A 1 HETATM 3 C C2A PXM . . . B 2 142.323 130.199 108.207 1 71.05 ? C2A PXM 501 A 1 HETATM 4 C C3 PXM . . . B 2 140.04 129.219 107.801 1 71.05 ? C3 PXM 501 A 1 HETATM 5 O O3 PXM . . . B 2 139.491 130.374 108.363 1 71.05 ? O3 PXM 501 A 1 HETATM 6 C C4 PXM . . . B 2 139.222 128.199 107.341 1 71.05 ? C4 PXM 501 A 1 HETATM 7 C C5 PXM . . . B 2 139.831 127.079 106.797 1 71.05 ? C5 PXM 501 A 1 HETATM 8 C C5A PXM . . . B 2 138.994 125.919 106.267 1 71.05 ? C5A PXM 501 A 1 HETATM 9 O O5 PXM . . . B 2 138.584 126.228 104.963 1 71.05 ? O5 PXM 501 A 1 HETATM 10 C C6 PXM . . . B 2 141.209 127.007 106.727 1 71.05 ? C6 PXM 501 A 1 HETATM 11 C C4A PXM . . . B 2 137.701 128.31 107.431 1 71.05 ? C4A PXM 501 A 1 HETATM 12 N N4 PXM . . . B 2 137.275 128.389 108.816 1 71.05 ? N4 PXM 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #