data_8XVJ # _model_server_result.job_id GCbgpe9uHzhCNpiTBN50Og _model_server_result.datetime_utc '2025-04-05 02:15:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 8XVJ # _exptl.entry_id 8XVJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 588.273 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Macitentan _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XVJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 H CYS 25 1_555 A SG CYS 118 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 173 H CYS 154 1_555 A SG CYS 229 H CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 37 K CYS 22 1_555 B SG CYS 111 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 43 L CYS 24 1_555 C SG CYS 108 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 155 L CYS 136 1_555 C SG CYS 215 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 D SG CYS 435 R CYS 158 1_555 D SG CYS 516 R CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C19 H20 Br2 N6 O4 S' _chem_comp.formula_weight 588.273 _chem_comp.id A1D5I _chem_comp.mon_nstd_flag . _chem_comp.name Macitentan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1D5I sing 1 n n C2 C3 A1D5I sing 2 n n C7 N4 A1D5I doub 3 n y C7 N3 A1D5I sing 4 n y C3 N1 A1D5I sing 5 n n O1 S1 A1D5I doub 6 n n N4 C4 A1D5I sing 7 n y N3 C6 A1D5I doub 8 n y N1 S1 A1D5I sing 9 n n S1 N2 A1D5I sing 10 n n S1 O2 A1D5I doub 11 n n C4 N2 A1D5I sing 12 n n C4 C5 A1D5I doub 13 n y C8 O3 A1D5I sing 14 n n C8 C9 A1D5I sing 15 n n C6 C5 A1D5I sing 16 n y C6 O3 A1D5I sing 17 n n C5 C14 A1D5I sing 18 n n C9 O4 A1D5I sing 19 n n O4 C10 A1D5I sing 20 n n C14 C19 A1D5I doub 21 n y C14 C15 A1D5I sing 22 n y C10 N5 A1D5I doub 23 n y C10 N6 A1D5I sing 24 n y N5 C11 A1D5I sing 25 n y C19 C18 A1D5I sing 26 n y C15 C16 A1D5I doub 27 n y N6 C13 A1D5I doub 28 n y C11 C12 A1D5I doub 29 n y C13 C12 A1D5I sing 30 n y C12 BR1 A1D5I sing 31 n n C18 C17 A1D5I doub 32 n y C16 C17 A1D5I sing 33 n y C17 BR2 A1D5I sing 34 n n C1 H1 A1D5I sing 35 n n C1 H2 A1D5I sing 36 n n C1 H3 A1D5I sing 37 n n C2 H4 A1D5I sing 38 n n C2 H5 A1D5I sing 39 n n C3 H6 A1D5I sing 40 n n C3 H7 A1D5I sing 41 n n C8 H8 A1D5I sing 42 n n C8 H9 A1D5I sing 43 n n C9 H10 A1D5I sing 44 n n C9 H11 A1D5I sing 45 n n C11 H12 A1D5I sing 46 n n C13 H13 A1D5I sing 47 n n C15 H14 A1D5I sing 48 n n C16 H15 A1D5I sing 49 n n C7 H16 A1D5I sing 50 n n C18 H17 A1D5I sing 51 n n C19 H18 A1D5I sing 52 n n N1 H19 A1D5I sing 53 n n N2 H20 A1D5I sing 54 n n # _atom_sites.entry_id 8XVJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id A1D5I _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 502 _pdbx_nonpoly_scheme.pdb_mon_id A1D5I _pdbx_nonpoly_scheme.auth_mon_id 02M _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1D5I . . . E 5 155.441 146.281 130.431 1 48.66 ? C1 A1D5I 1201 R 1 HETATM 2 C C2 A1D5I . . . E 5 154.802 147.528 131 1 46.31 ? C2 A1D5I 1201 R 1 HETATM 3 C C3 A1D5I . . . E 5 155.22 147.766 132.436 1 46.89 ? C3 A1D5I 1201 R 1 HETATM 4 C C4 A1D5I . . . E 5 152.504 149.053 134.084 1 49.1 ? C4 A1D5I 1201 R 1 HETATM 5 C C5 A1D5I . . . E 5 152.398 150.234 134.855 1 37.61 ? C5 A1D5I 1201 R 1 HETATM 6 C C6 A1D5I . . . E 5 152.08 151.426 134.174 1 38.87 ? C6 A1D5I 1201 R 1 HETATM 7 C C8 A1D5I . . . E 5 151.789 153.79 134.115 1 40.24 ? C8 A1D5I 1201 R 1 HETATM 8 C C9 A1D5I . . . E 5 151.944 154.955 135.044 1 47.34 ? C9 A1D5I 1201 R 1 HETATM 9 C C10 A1D5I . . . E 5 153.6 155.875 136.463 1 38.23 ? C10 A1D5I 1201 R 1 HETATM 10 C C11 A1D5I . . . E 5 153.16 157.921 137.319 1 46.19 ? C11 A1D5I 1201 R 1 HETATM 11 C C12 A1D5I . . . E 5 154.293 157.834 138.099 1 49.22 ? C12 A1D5I 1201 R 1 HETATM 12 C C13 A1D5I . . . E 5 155.05 156.685 137.999 1 38.49 ? C13 A1D5I 1201 R 1 HETATM 13 C C14 A1D5I . . . E 5 152.634 150.21 136.324 1 38.87 ? C14 A1D5I 1201 R 1 HETATM 14 C C15 A1D5I . . . E 5 152.043 149.249 137.138 1 48.13 ? C15 A1D5I 1201 R 1 HETATM 15 C C16 A1D5I . . . E 5 152.276 149.21 138.499 1 43.03 ? C16 A1D5I 1201 R 1 HETATM 16 C C17 A1D5I . . . E 5 153.132 150.132 139.056 1 36.14 ? C17 A1D5I 1201 R 1 HETATM 17 C C7 A1D5I . . . E 5 151.994 150.287 132.229 1 44.31 ? C7 A1D5I 1201 R 1 HETATM 18 C C18 A1D5I . . . E 5 153.75 151.089 138.285 1 40.7 ? C18 A1D5I 1201 R 1 HETATM 19 C C19 A1D5I . . . E 5 153.504 151.115 136.926 1 42.95 ? C19 A1D5I 1201 R 1 HETATM 20 N N1 A1D5I . . . E 5 154.814 146.666 133.315 1 47.61 ? N1 A1D5I 1201 R 1 HETATM 21 N N2 A1D5I . . . E 5 152.804 147.865 134.612 1 59.15 ? N2 A1D5I 1201 R 1 HETATM 22 N N3 A1D5I . . . E 5 151.877 151.455 132.876 1 44.77 ? N3 A1D5I 1201 R 1 HETATM 23 N N4 A1D5I . . . E 5 152.292 149.104 132.76 1 46.62 ? N4 A1D5I 1201 R 1 HETATM 24 N N5 A1D5I . . . E 5 152.802 156.936 136.494 1 42.41 ? N5 A1D5I 1201 R 1 HETATM 25 N N6 A1D5I . . . E 5 154.707 155.692 137.176 1 36.4 ? N6 A1D5I 1201 R 1 HETATM 26 O O1 A1D5I . . . E 5 152.471 146.39 132.661 1 47.8 ? O1 A1D5I 1201 R 1 HETATM 27 O O2 A1D5I . . . E 5 153.296 145.491 134.788 1 54.52 ? O2 A1D5I 1201 R 1 HETATM 28 O O3 A1D5I . . . E 5 151.98 152.574 134.874 1 43.57 ? O3 A1D5I 1201 R 1 HETATM 29 O O4 A1D5I . . . E 5 153.244 154.882 135.642 1 43.46 ? O4 A1D5I 1201 R 1 HETATM 30 S S1 A1D5I . . . E 5 153.282 146.522 133.815 1 60.82 ? S1 A1D5I 1201 R 1 HETATM 31 BR BR1 A1D5I . . . E 5 154.787 159.232 139.263 1 103.77 ? BR1 A1D5I 1201 R 1 HETATM 32 BR BR2 A1D5I . . . E 5 153.464 150.088 140.924 1 90.22 ? BR2 A1D5I 1201 R 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #