data_8XVK # _model_server_result.job_id zaKR0vqtmNv9X-zvNpGpkg _model_server_result.datetime_utc '2025-04-03 01:53:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 8XVK # _exptl.entry_id 8XVK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 378.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ambrisentan _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XVK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 H CYS 25 1_555 A SG CYS 118 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 173 H CYS 154 1_555 A SG CYS 229 H CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 37 K CYS 22 1_555 B SG CYS 111 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 C SG CYS 43 L CYS 24 1_555 C SG CYS 108 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 155 L CYS 136 1_555 C SG CYS 215 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 435 R CYS 158 1_555 D SG CYS 516 R CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C22 H22 N2 O4' _chem_comp.formula_weight 378.421 _chem_comp.id A1D5J _chem_comp.mon_nstd_flag . _chem_comp.name Ambrisentan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1D5J sing 1 n n C3 C2 A1D5J doub 2 n y C3 C4 A1D5J sing 3 n y C2 N2 A1D5J sing 4 n y C22 C4 A1D5J sing 5 n n C4 N1 A1D5J doub 6 n y N2 C5 A1D5J doub 7 n y N1 C5 A1D5J sing 8 n y C5 O1 A1D5J sing 9 n n O1 C6 A1D5J sing 10 n n O3 C7 A1D5J doub 11 n n C6 C7 A1D5J sing 12 n n C6 C8 A1D5J sing 13 n n C7 O2 A1D5J sing 14 n n C11 C10 A1D5J doub 15 n y C11 C12 A1D5J sing 16 n y C10 C9 A1D5J sing 17 n y C16 C17 A1D5J doub 18 n y C16 C15 A1D5J sing 19 n y C17 C18 A1D5J sing 20 n y C12 C13 A1D5J doub 21 n y C9 C8 A1D5J sing 22 n n C9 C14 A1D5J doub 23 n y C8 C15 A1D5J sing 24 n n C8 O4 A1D5J sing 25 n n C15 C20 A1D5J doub 26 n y C13 C14 A1D5J sing 27 n y C21 O4 A1D5J sing 28 n n C18 C19 A1D5J doub 29 n y C20 C19 A1D5J sing 30 n y C1 H1 A1D5J sing 31 n n C1 H2 A1D5J sing 32 n n C1 H3 A1D5J sing 33 n n C10 H4 A1D5J sing 34 n n C11 H5 A1D5J sing 35 n n C12 H6 A1D5J sing 36 n n C13 H7 A1D5J sing 37 n n C14 H8 A1D5J sing 38 n n C16 H9 A1D5J sing 39 n n C17 H10 A1D5J sing 40 n n C18 H11 A1D5J sing 41 n n C19 H12 A1D5J sing 42 n n C20 H13 A1D5J sing 43 n n C21 H14 A1D5J sing 44 n n C21 H15 A1D5J sing 45 n n C21 H16 A1D5J sing 46 n n C22 H17 A1D5J sing 47 n n C22 H18 A1D5J sing 48 n n C22 H19 A1D5J sing 49 n n C3 H20 A1D5J sing 50 n n C6 H21 A1D5J sing 51 n n O2 H22 A1D5J sing 52 n n # _atom_sites.entry_id 8XVK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id A1D5J _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id A1D5J _pdbx_nonpoly_scheme.auth_mon_id YJH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1D5J . . . E 5 154.694 150.855 162.197 1 61.3 ? C1 A1D5J 1201 R 1 HETATM 2 C C10 A1D5J . . . E 5 156.491 152.016 168.26 1 64.21 ? C10 A1D5J 1201 R 1 HETATM 3 C C11 A1D5J . . . E 5 156.839 153.356 168.207 1 60.71 ? C11 A1D5J 1201 R 1 HETATM 4 C C12 A1D5J . . . E 5 156.268 154.254 169.078 1 65.75 ? C12 A1D5J 1201 R 1 HETATM 5 C C13 A1D5J . . . E 5 155.35 153.825 170.005 1 65.31 ? C13 A1D5J 1201 R 1 HETATM 6 C C14 A1D5J . . . E 5 154.993 152.487 170.068 1 63.67 ? C14 A1D5J 1201 R 1 HETATM 7 C C15 A1D5J . . . E 5 153.669 149.975 169.644 1 63.99 ? C15 A1D5J 1201 R 1 HETATM 8 C C16 A1D5J . . . E 5 152.651 150.083 168.692 1 61.22 ? C16 A1D5J 1201 R 1 HETATM 9 C C17 A1D5J . . . E 5 151.32 149.989 169.064 1 60.66 ? C17 A1D5J 1201 R 1 HETATM 10 C C18 A1D5J . . . E 5 150.982 149.779 170.381 1 61.35 ? C18 A1D5J 1201 R 1 HETATM 11 C C19 A1D5J . . . E 5 151.964 149.662 171.334 1 64.06 ? C19 A1D5J 1201 R 1 HETATM 12 C C2 A1D5J . . . E 5 155.352 150.159 163.351 1 61.37 ? C2 A1D5J 1201 R 1 HETATM 13 C C20 A1D5J . . . E 5 153.298 149.756 170.974 1 64.86 ? C20 A1D5J 1201 R 1 HETATM 14 C C21 A1D5J . . . E 5 157.303 149.363 170.143 1 61.42 ? C21 A1D5J 1201 R 1 HETATM 15 C C22 A1D5J . . . E 5 158.13 147.796 164.227 1 68.67 ? C22 A1D5J 1201 R 1 HETATM 16 C C3 A1D5J . . . E 5 156.429 149.318 163.172 1 63.2 ? C3 A1D5J 1201 R 1 HETATM 17 C C4 A1D5J . . . E 5 156.958 148.73 164.3 1 67.53 ? C4 A1D5J 1201 R 1 HETATM 18 C C5 A1D5J . . . E 5 155.421 149.784 165.58 1 61.68 ? C5 A1D5J 1201 R 1 HETATM 19 C C6 A1D5J . . . E 5 155.464 149.321 167.917 1 66.91 ? C6 A1D5J 1201 R 1 HETATM 20 C C7 A1D5J . . . E 5 154.984 147.867 167.938 1 70.31 ? C7 A1D5J 1201 R 1 HETATM 21 C C8 A1D5J . . . E 5 155.154 150.073 169.268 1 66.01 ? C8 A1D5J 1201 R 1 HETATM 22 C C9 A1D5J . . . E 5 155.556 151.554 169.192 1 65.94 ? C9 A1D5J 1201 R 1 HETATM 23 N N1 A1D5J . . . E 5 156.46 148.959 165.5 1 64.15 ? N1 A1D5J 1201 R 1 HETATM 24 N N2 A1D5J . . . E 5 154.847 150.393 164.547 1 58.97 ? N2 A1D5J 1201 R 1 HETATM 25 O O1 A1D5J . . . E 5 154.902 150.027 166.792 1 66.56 ? O1 A1D5J 1201 R 1 HETATM 26 O O2 A1D5J . . . E 5 155.426 147.1 168.817 1 69.71 ? O2 A1D5J 1201 R 1 HETATM 27 O O3 A1D5J . . . E 5 154.16 147.497 167.078 1 69.18 ? O3 A1D5J 1201 R 1 HETATM 28 O O4 A1D5J . . . E 5 155.891 149.447 170.312 1 62.72 ? O4 A1D5J 1201 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #