data_8XWZ
#
_model_server_result.job_id            CK64LQjyMWAiFz_P3v6n5Q 
_model_server_result.datetime_utc      '2025-09-06 09:15:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xwz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TB","auth_seq_id":333}' 
#
_entry.id    8XWZ 
#
_exptl.entry_id    8XWZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    69 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XWZ 
_cell.length_a            80.422 
_cell.length_b            80.422 
_cell.length_c            141.25 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XWZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
? 6 BA N N 
? 6 CA N N 
? 6 DA N N 
? 6 EA N N 
? 6 FA N N 
? 6 GA N N 
? 6 HA N N 
? 6 IA N N 
? 6 JA N N 
? 6 KA N N 
? 6 LA N N 
? 6 MA N N 
? 6 SA N N 
? 6 TA N N 
? 6 UA N N 
? 6 VA N N 
? 6 WA N N 
? 6 XA N N 
? 6 YA N N 
? 6 ZA N N 
? 6 AB N N 
? 6 BB N N 
? 6 CB N N 
? 6 DB N N 
? 6 EB N N 
? 6 FB N N 
? 6 GB N N 
? 6 HB N N 
? 6 IB N N 
? 6 JB N N 
? 6 KB N N 
? 6 LB N N 
? 6 MB N N 
? 6 NB N N 
? 6 OB N N 
? 6 PB N N 
? 6 QB N N 
? 6 RB N N 
? 6 SB N N 
? 6 TB N N 
? 6 UB N N 
? 6 VB N N 
? 6 WB N N 
? 6 XB N N 
? 6 YB N N 
? 6 ZB N N 
? 6 AC N N 
? 6 BC N N 
? 6 CC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8XWZ 
_atom_sites.fract_transf_matrix[1][1]    0.012434 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012434 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00708 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 301 3 PO4 PO4 . 
D 2 PO4 A 1 302 4 PO4 PO4 . 
E 3 ETX A 1 303 5 ETX ETX . 
F 4 PGE A 1 304 8 PGE PGE . 
G 5 GOL A 1 305 9 GOL GOL . 
H 6 EDO A 1 306 11 EDO EDO . 
I 6 EDO A 1 307 13 EDO EDO . 
J 6 EDO A 1 308 15 EDO EDO . 
K 6 EDO A 1 309 18 EDO EDO . 
L 6 EDO A 1 310 20 EDO EDO . 
M 6 EDO A 1 311 23 EDO EDO . 
N 6 EDO A 1 312 25 EDO EDO . 
O 6 EDO A 1 313 26 EDO EDO . 
P 6 EDO A 1 314 27 EDO EDO . 
Q 6 EDO A 1 315 28 EDO EDO . 
R 6 EDO A 1 316 30 EDO EDO . 
S 6 EDO A 1 317 31 EDO EDO . 
T 6 EDO A 1 318 32 EDO EDO . 
U 6 EDO A 1 319 34 EDO EDO . 
V 6 EDO A 1 320 36 EDO EDO . 
W 6 EDO A 1 321 39 EDO EDO . 
X 6 EDO A 1 322 44 EDO EDO . 
Y 6 EDO A 1 323 45 EDO EDO . 
Z 6 EDO A 1 324 46 EDO EDO . 
AA 6 EDO A 1 325 49 EDO EDO . 
BA 6 EDO A 1 326 56 EDO EDO . 
CA 6 EDO A 1 327 58 EDO EDO . 
DA 6 EDO A 1 328 60 EDO EDO . 
EA 6 EDO A 1 329 62 EDO EDO . 
FA 6 EDO A 1 330 63 EDO EDO . 
GA 6 EDO A 1 331 64 EDO EDO . 
HA 6 EDO A 1 332 65 EDO EDO . 
IA 6 EDO A 1 333 69 EDO EDO . 
JA 6 EDO A 1 334 72 EDO EDO . 
KA 6 EDO A 1 335 73 EDO EDO . 
LA 6 EDO A 1 336 76 EDO EDO . 
MA 6 EDO A 1 337 79 EDO EDO . 
NA 2 PO4 B 1 301 1 PO4 PO4 . 
OA 2 PO4 B 1 302 2 PO4 PO4 . 
PA 7 PEG B 1 303 6 PEG PEG . 
QA 7 PEG B 1 304 7 PEG PEG . 
RA 5 GOL B 1 305 10 GOL GOL . 
SA 6 EDO B 1 306 12 EDO EDO . 
TA 6 EDO B 1 307 14 EDO EDO . 
UA 6 EDO B 1 308 16 EDO EDO . 
VA 6 EDO B 1 309 17 EDO EDO . 
WA 6 EDO B 1 310 19 EDO EDO . 
XA 6 EDO B 1 311 21 EDO EDO . 
YA 6 EDO B 1 312 22 EDO EDO . 
ZA 6 EDO B 1 313 24 EDO EDO . 
AB 6 EDO B 1 314 29 EDO EDO . 
BB 6 EDO B 1 315 33 EDO EDO . 
CB 6 EDO B 1 316 35 EDO EDO . 
DB 6 EDO B 1 317 37 EDO EDO . 
EB 6 EDO B 1 318 38 EDO EDO . 
FB 6 EDO B 1 319 40 EDO EDO . 
GB 6 EDO B 1 320 41 EDO EDO . 
HB 6 EDO B 1 321 42 EDO EDO . 
IB 6 EDO B 1 322 43 EDO EDO . 
JB 6 EDO B 1 323 47 EDO EDO . 
KB 6 EDO B 1 324 48 EDO EDO . 
LB 6 EDO B 1 325 50 EDO EDO . 
MB 6 EDO B 1 326 51 EDO EDO . 
NB 6 EDO B 1 327 52 EDO EDO . 
OB 6 EDO B 1 328 53 EDO EDO . 
PB 6 EDO B 1 329 54 EDO EDO . 
QB 6 EDO B 1 330 55 EDO EDO . 
RB 6 EDO B 1 331 57 EDO EDO . 
SB 6 EDO B 1 332 59 EDO EDO . 
TB 6 EDO B 1 333 61 EDO EDO . 
UB 6 EDO B 1 334 66 EDO EDO . 
VB 6 EDO B 1 335 67 EDO EDO . 
WB 6 EDO B 1 336 68 EDO EDO . 
XB 6 EDO B 1 337 70 EDO EDO . 
YB 6 EDO B 1 338 71 EDO EDO . 
ZB 6 EDO B 1 339 74 EDO EDO . 
AC 6 EDO B 1 340 75 EDO EDO . 
BC 6 EDO B 1 341 77 EDO EDO . 
CC 6 EDO B 1 342 78 EDO EDO . 
DC 8 HOH A 1 401 59 HOH HOH . 
DC 8 HOH A 2 402 31 HOH HOH . 
DC 8 HOH A 3 403 91 HOH HOH . 
DC 8 HOH A 4 404 51 HOH HOH . 
DC 8 HOH A 5 405 72 HOH HOH . 
DC 8 HOH A 6 406 71 HOH HOH . 
DC 8 HOH A 7 407 56 HOH HOH . 
DC 8 HOH A 8 408 50 HOH HOH . 
DC 8 HOH A 9 409 54 HOH HOH . 
DC 8 HOH A 10 410 73 HOH HOH . 
DC 8 HOH A 11 411 96 HOH HOH . 
DC 8 HOH A 12 412 52 HOH HOH . 
DC 8 HOH A 13 413 76 HOH HOH . 
DC 8 HOH A 14 414 16 HOH HOH . 
DC 8 HOH A 15 415 2 HOH HOH . 
DC 8 HOH A 16 416 113 HOH HOH . 
DC 8 HOH A 17 417 94 HOH HOH . 
DC 8 HOH A 18 418 103 HOH HOH . 
DC 8 HOH A 19 419 42 HOH HOH . 
DC 8 HOH A 20 420 30 HOH HOH . 
DC 8 HOH A 21 421 5 HOH HOH . 
DC 8 HOH A 22 422 90 HOH HOH . 
DC 8 HOH A 23 423 10 HOH HOH . 
DC 8 HOH A 24 424 108 HOH HOH . 
DC 8 HOH A 25 425 99 HOH HOH . 
DC 8 HOH A 26 426 118 HOH HOH . 
DC 8 HOH A 27 427 60 HOH HOH . 
DC 8 HOH A 28 428 74 HOH HOH . 
DC 8 HOH A 29 429 49 HOH HOH . 
DC 8 HOH A 30 430 64 HOH HOH . 
DC 8 HOH A 31 431 47 HOH HOH . 
DC 8 HOH A 32 432 67 HOH HOH . 
DC 8 HOH A 33 433 82 HOH HOH . 
DC 8 HOH A 34 434 53 HOH HOH . 
DC 8 HOH A 35 435 4 HOH HOH . 
DC 8 HOH A 36 436 13 HOH HOH . 
DC 8 HOH A 37 437 39 HOH HOH . 
DC 8 HOH A 38 438 106 HOH HOH . 
DC 8 HOH A 39 439 26 HOH HOH . 
DC 8 HOH A 40 440 78 HOH HOH . 
DC 8 HOH A 41 441 3 HOH HOH . 
DC 8 HOH A 42 442 117 HOH HOH . 
DC 8 HOH A 43 443 107 HOH HOH . 
DC 8 HOH A 44 444 80 HOH HOH . 
DC 8 HOH A 45 445 111 HOH HOH . 
DC 8 HOH A 46 446 65 HOH HOH . 
DC 8 HOH A 47 447 11 HOH HOH . 
DC 8 HOH A 48 448 116 HOH HOH . 
DC 8 HOH A 49 449 105 HOH HOH . 
DC 8 HOH A 50 450 14 HOH HOH . 
DC 8 HOH A 51 451 37 HOH HOH . 
DC 8 HOH A 52 452 112 HOH HOH . 
DC 8 HOH A 53 453 79 HOH HOH . 
DC 8 HOH A 54 454 110 HOH HOH . 
DC 8 HOH A 55 455 45 HOH HOH . 
DC 8 HOH A 56 456 88 HOH HOH . 
DC 8 HOH A 57 457 35 HOH HOH . 
DC 8 HOH A 58 458 89 HOH HOH . 
DC 8 HOH A 59 459 77 HOH HOH . 
DC 8 HOH A 60 460 12 HOH HOH . 
DC 8 HOH A 61 461 75 HOH HOH . 
DC 8 HOH A 62 462 46 HOH HOH . 
DC 8 HOH A 63 463 22 HOH HOH . 
DC 8 HOH A 64 464 114 HOH HOH . 
DC 8 HOH A 65 465 86 HOH HOH . 
DC 8 HOH A 66 466 66 HOH HOH . 
DC 8 HOH A 67 467 104 HOH HOH . 
DC 8 HOH A 68 468 62 HOH HOH . 
DC 8 HOH A 69 469 68 HOH HOH . 
EC 8 HOH B 1 401 9 HOH HOH . 
EC 8 HOH B 2 402 100 HOH HOH . 
EC 8 HOH B 3 403 28 HOH HOH . 
EC 8 HOH B 4 404 44 HOH HOH . 
EC 8 HOH B 5 405 98 HOH HOH . 
EC 8 HOH B 6 406 29 HOH HOH . 
EC 8 HOH B 7 407 58 HOH HOH . 
EC 8 HOH B 8 408 43 HOH HOH . 
EC 8 HOH B 9 409 34 HOH HOH . 
EC 8 HOH B 10 410 17 HOH HOH . 
EC 8 HOH B 11 411 36 HOH HOH . 
EC 8 HOH B 12 412 1 HOH HOH . 
EC 8 HOH B 13 413 83 HOH HOH . 
EC 8 HOH B 14 414 61 HOH HOH . 
EC 8 HOH B 15 415 84 HOH HOH . 
EC 8 HOH B 16 416 57 HOH HOH . 
EC 8 HOH B 17 417 15 HOH HOH . 
EC 8 HOH B 18 418 109 HOH HOH . 
EC 8 HOH B 19 419 48 HOH HOH . 
EC 8 HOH B 20 420 41 HOH HOH . 
EC 8 HOH B 21 421 93 HOH HOH . 
EC 8 HOH B 22 422 92 HOH HOH . 
EC 8 HOH B 23 423 69 HOH HOH . 
EC 8 HOH B 24 424 33 HOH HOH . 
EC 8 HOH B 25 425 32 HOH HOH . 
EC 8 HOH B 26 426 38 HOH HOH . 
EC 8 HOH B 27 427 21 HOH HOH . 
EC 8 HOH B 28 428 7 HOH HOH . 
EC 8 HOH B 29 429 63 HOH HOH . 
EC 8 HOH B 30 430 101 HOH HOH . 
EC 8 HOH B 31 431 24 HOH HOH . 
EC 8 HOH B 32 432 81 HOH HOH . 
EC 8 HOH B 33 433 27 HOH HOH . 
EC 8 HOH B 34 434 20 HOH HOH . 
EC 8 HOH B 35 435 85 HOH HOH . 
EC 8 HOH B 36 436 8 HOH HOH . 
EC 8 HOH B 37 437 18 HOH HOH . 
EC 8 HOH B 38 438 6 HOH HOH . 
EC 8 HOH B 39 439 19 HOH HOH . 
EC 8 HOH B 40 440 70 HOH HOH . 
EC 8 HOH B 41 441 87 HOH HOH . 
EC 8 HOH B 42 442 40 HOH HOH . 
EC 8 HOH B 43 443 97 HOH HOH . 
EC 8 HOH B 44 444 55 HOH HOH . 
EC 8 HOH B 45 445 119 HOH HOH . 
EC 8 HOH B 46 446 95 HOH HOH . 
EC 8 HOH B 47 447 25 HOH HOH . 
EC 8 HOH B 48 448 115 HOH HOH . 
EC 8 HOH B 49 449 23 HOH HOH . 
EC 8 HOH B 50 450 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . TB 6 5.312 38.765 -28.232 1 85.71 ? C1 EDO 333 B 1 
HETATM 2 O O1 EDO . . . TB 6 6.69 39.145 -28.326 1 84.39 ? O1 EDO 333 B 1 
HETATM 3 C C2 EDO . . . TB 6 4.508 39.889 -27.591 1 84.16 ? C2 EDO 333 B 1 
HETATM 4 O O2 EDO . . . TB 6 5.046 40.19 -26.298 1 78.89 ? O2 EDO 333 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#