data_8XX0
#
_model_server_result.job_id            UKVAEL7JDYQXlSG8qlh8bQ 
_model_server_result.datetime_utc      '2024-11-26 20:19:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xx0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    8XX0 
#
_exptl.entry_id    8XX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.19 
_cell.angle_gamma         90 
_cell.entry_id            8XX0 
_cell.length_a            282.05 
_cell.length_b            86.09 
_cell.length_c            56.06 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 N N N 
? 6 O N N 
#
_pdbx_entity_branch.entity_id    5 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   5 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
5 n E NAG 1 C 1 NAG C 1 NAG 
5 n E NAG 2 C 2 NAG C 2 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 148 H CYS 148 1_555 B SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 C SG CYS 22 A CYS 22 1_555 C SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 144 A CYS 144 1_555 C SG CYS 196 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 C SG CYS 242 A CYS 242 1_555 C SG CYS 301 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 D SG CYS 22 B CYS 22 1_555 D SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 D SG CYS 137 B CYS 137 1_555 D SG CYS 196 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 C ND2 ASN 287 A ASN 287 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale2 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 131 n n 
C1 C2 EDO sing 132 n n 
C1 H11 EDO sing 133 n n 
C1 H12 EDO sing 134 n n 
O1 HO1 EDO sing 135 n n 
C2 O2 EDO sing 136 n n 
C2 H21 EDO sing 137 n n 
C2 H22 EDO sing 138 n n 
O2 HO2 EDO sing 139 n n 
#
_atom_sites.entry_id                     8XX0 
_atom_sites.fract_transf_matrix[1][1]    0.003545 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000447 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011616 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017979 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 EDO L 1 301 301 EDO EDO . 
G 6 EDO L 1 302 302 EDO EDO . 
H 6 EDO L 1 303 303 EDO EDO . 
I 6 EDO H 1 301 301 EDO EDO . 
J 6 EDO H 1 302 302 EDO EDO . 
K 6 EDO H 1 303 303 EDO EDO . 
L 6 EDO H 1 304 304 EDO EDO . 
M 7 BOG H 1 305 305 BOG BOG . 
N 6 EDO A 1 401 401 EDO EDO . 
O 6 EDO B 1 301 301 EDO EDO . 
P 8 HOH L 1 401 401 HOH HOH . 
P 8 HOH L 2 402 402 HOH HOH . 
P 8 HOH L 3 403 403 HOH HOH . 
P 8 HOH L 4 404 404 HOH HOH . 
P 8 HOH L 5 405 405 HOH HOH . 
P 8 HOH L 6 406 406 HOH HOH . 
P 8 HOH L 7 407 407 HOH HOH . 
P 8 HOH L 8 408 408 HOH HOH . 
P 8 HOH L 9 409 409 HOH HOH . 
P 8 HOH L 10 410 410 HOH HOH . 
P 8 HOH L 11 411 411 HOH HOH . 
P 8 HOH L 12 412 412 HOH HOH . 
P 8 HOH L 13 413 413 HOH HOH . 
P 8 HOH L 14 414 414 HOH HOH . 
P 8 HOH L 15 415 415 HOH HOH . 
P 8 HOH L 16 416 416 HOH HOH . 
P 8 HOH L 17 417 417 HOH HOH . 
P 8 HOH L 18 418 418 HOH HOH . 
P 8 HOH L 19 419 419 HOH HOH . 
P 8 HOH L 20 420 420 HOH HOH . 
P 8 HOH L 21 421 421 HOH HOH . 
P 8 HOH L 22 422 422 HOH HOH . 
P 8 HOH L 23 423 423 HOH HOH . 
P 8 HOH L 24 424 424 HOH HOH . 
P 8 HOH L 25 425 425 HOH HOH . 
P 8 HOH L 26 426 426 HOH HOH . 
P 8 HOH L 27 427 427 HOH HOH . 
P 8 HOH L 28 428 428 HOH HOH . 
Q 8 HOH H 1 401 401 HOH HOH . 
Q 8 HOH H 2 402 402 HOH HOH . 
Q 8 HOH H 3 403 403 HOH HOH . 
Q 8 HOH H 4 404 404 HOH HOH . 
Q 8 HOH H 5 405 405 HOH HOH . 
Q 8 HOH H 6 406 406 HOH HOH . 
Q 8 HOH H 7 407 407 HOH HOH . 
Q 8 HOH H 8 408 408 HOH HOH . 
Q 8 HOH H 9 409 409 HOH HOH . 
Q 8 HOH H 10 410 410 HOH HOH . 
Q 8 HOH H 11 411 411 HOH HOH . 
Q 8 HOH H 12 412 412 HOH HOH . 
Q 8 HOH H 13 413 413 HOH HOH . 
Q 8 HOH H 14 414 414 HOH HOH . 
Q 8 HOH H 15 415 415 HOH HOH . 
Q 8 HOH H 16 416 416 HOH HOH . 
Q 8 HOH H 17 417 417 HOH HOH . 
Q 8 HOH H 18 418 418 HOH HOH . 
Q 8 HOH H 19 419 419 HOH HOH . 
Q 8 HOH H 20 420 420 HOH HOH . 
Q 8 HOH H 21 421 421 HOH HOH . 
Q 8 HOH H 22 422 422 HOH HOH . 
R 8 HOH A 1 501 501 HOH HOH . 
R 8 HOH A 2 502 502 HOH HOH . 
R 8 HOH A 3 503 503 HOH HOH . 
R 8 HOH A 4 504 504 HOH HOH . 
R 8 HOH A 5 505 505 HOH HOH . 
R 8 HOH A 6 506 506 HOH HOH . 
R 8 HOH A 7 507 507 HOH HOH . 
R 8 HOH A 8 508 508 HOH HOH . 
R 8 HOH A 9 509 509 HOH HOH . 
R 8 HOH A 10 510 510 HOH HOH . 
R 8 HOH A 11 511 511 HOH HOH . 
R 8 HOH A 12 512 512 HOH HOH . 
R 8 HOH A 13 513 513 HOH HOH . 
R 8 HOH A 14 514 514 HOH HOH . 
R 8 HOH A 15 515 515 HOH HOH . 
R 8 HOH A 16 516 516 HOH HOH . 
R 8 HOH A 17 517 517 HOH HOH . 
R 8 HOH A 18 518 518 HOH HOH . 
R 8 HOH A 19 519 519 HOH HOH . 
S 8 HOH B 1 401 401 HOH HOH . 
S 8 HOH B 2 402 402 HOH HOH . 
S 8 HOH B 3 403 403 HOH HOH . 
S 8 HOH B 4 404 404 HOH HOH . 
S 8 HOH B 5 405 405 HOH HOH . 
S 8 HOH B 6 406 406 HOH HOH . 
S 8 HOH B 7 407 407 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 6 57.032 -7.39 -44.564 1 33.72 ? C1 EDO 301 L 1 
HETATM 2 O O1 EDO . . . F 6 56.202 -8.439 -44.052 1 37.44 ? O1 EDO 301 L 1 
HETATM 3 C C2 EDO . . . F 6 56.709 -6.096 -43.828 1 35.94 ? C2 EDO 301 L 1 
HETATM 4 O O2 EDO . . . F 6 57.649 -5.072 -44.162 1 33.54 ? O2 EDO 301 L 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           4 
#