data_8Y1W # _model_server_result.job_id rfw-2hspUN0pUjG_kOoDiQ _model_server_result.datetime_utc '2024-11-27 16:50:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8Y1W # _exptl.entry_id 8Y1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8Y1W _cell.length_a 52.616 _cell.length_b 52.616 _cell.length_c 87.519 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 8Y1W _atom_sites.fract_transf_matrix[1][1] 0.019006 _atom_sites.fract_transf_matrix[1][2] 0.010973 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 202 GOL GOL . C 3 UMP A 1 202 1 UMP DU . D 4 PO4 A 1 203 1 PO4 PO4 . E 4 PO4 A 1 204 2 PO4 PO4 . F 5 HOH A 1 301 25 HOH HOH . F 5 HOH A 2 302 58 HOH HOH . F 5 HOH A 3 303 83 HOH HOH . F 5 HOH A 4 304 32 HOH HOH . F 5 HOH A 5 305 57 HOH HOH . F 5 HOH A 6 306 67 HOH HOH . F 5 HOH A 7 307 87 HOH HOH . F 5 HOH A 8 308 47 HOH HOH . F 5 HOH A 9 309 59 HOH HOH . F 5 HOH A 10 310 41 HOH HOH . F 5 HOH A 11 311 91 HOH HOH . F 5 HOH A 12 312 65 HOH HOH . F 5 HOH A 13 313 29 HOH HOH . F 5 HOH A 14 314 86 HOH HOH . F 5 HOH A 15 315 88 HOH HOH . F 5 HOH A 16 316 72 HOH HOH . F 5 HOH A 17 317 28 HOH HOH . F 5 HOH A 18 318 99 HOH HOH . F 5 HOH A 19 319 19 HOH HOH . F 5 HOH A 20 320 22 HOH HOH . F 5 HOH A 21 321 42 HOH HOH . F 5 HOH A 22 322 33 HOH HOH . F 5 HOH A 23 323 11 HOH HOH . F 5 HOH A 24 324 36 HOH HOH . F 5 HOH A 25 325 4 HOH HOH . F 5 HOH A 26 326 23 HOH HOH . F 5 HOH A 27 327 95 HOH HOH . F 5 HOH A 28 328 5 HOH HOH . F 5 HOH A 29 329 17 HOH HOH . F 5 HOH A 30 330 79 HOH HOH . F 5 HOH A 31 331 55 HOH HOH . F 5 HOH A 32 332 89 HOH HOH . F 5 HOH A 33 333 24 HOH HOH . F 5 HOH A 34 334 35 HOH HOH . F 5 HOH A 35 335 66 HOH HOH . F 5 HOH A 36 336 8 HOH HOH . F 5 HOH A 37 337 7 HOH HOH . F 5 HOH A 38 338 81 HOH HOH . F 5 HOH A 39 339 2 HOH HOH . F 5 HOH A 40 340 37 HOH HOH . F 5 HOH A 41 341 20 HOH HOH . F 5 HOH A 42 342 50 HOH HOH . F 5 HOH A 43 343 85 HOH HOH . F 5 HOH A 44 344 64 HOH HOH . F 5 HOH A 45 345 31 HOH HOH . F 5 HOH A 46 346 54 HOH HOH . F 5 HOH A 47 347 78 HOH HOH . F 5 HOH A 48 348 48 HOH HOH . F 5 HOH A 49 349 16 HOH HOH . F 5 HOH A 50 350 102 HOH HOH . F 5 HOH A 51 351 53 HOH HOH . F 5 HOH A 52 352 82 HOH HOH . F 5 HOH A 53 353 63 HOH HOH . F 5 HOH A 54 354 56 HOH HOH . F 5 HOH A 55 355 21 HOH HOH . F 5 HOH A 56 356 90 HOH HOH . F 5 HOH A 57 357 27 HOH HOH . F 5 HOH A 58 358 93 HOH HOH . F 5 HOH A 59 359 98 HOH HOH . F 5 HOH A 60 360 100 HOH HOH . F 5 HOH A 61 361 101 HOH HOH . F 5 HOH A 62 362 77 HOH HOH . F 5 HOH A 63 363 69 HOH HOH . F 5 HOH A 64 364 3 HOH HOH . F 5 HOH A 65 365 14 HOH HOH . F 5 HOH A 66 366 40 HOH HOH . F 5 HOH A 67 367 6 HOH HOH . F 5 HOH A 68 368 80 HOH HOH . F 5 HOH A 69 369 39 HOH HOH . F 5 HOH A 70 370 76 HOH HOH . F 5 HOH A 71 371 1 HOH HOH . F 5 HOH A 72 372 51 HOH HOH . F 5 HOH A 73 373 49 HOH HOH . F 5 HOH A 74 374 10 HOH HOH . F 5 HOH A 75 375 92 HOH HOH . F 5 HOH A 76 376 9 HOH HOH . F 5 HOH A 77 377 18 HOH HOH . F 5 HOH A 78 378 30 HOH HOH . F 5 HOH A 79 379 34 HOH HOH . F 5 HOH A 80 380 26 HOH HOH . F 5 HOH A 81 381 84 HOH HOH . F 5 HOH A 82 382 70 HOH HOH . F 5 HOH A 83 383 45 HOH HOH . F 5 HOH A 84 384 52 HOH HOH . F 5 HOH A 85 385 60 HOH HOH . F 5 HOH A 86 386 15 HOH HOH . F 5 HOH A 87 387 12 HOH HOH . F 5 HOH A 88 388 73 HOH HOH . F 5 HOH A 89 389 94 HOH HOH . F 5 HOH A 90 390 62 HOH HOH . F 5 HOH A 91 391 44 HOH HOH . F 5 HOH A 92 392 97 HOH HOH . F 5 HOH A 93 393 38 HOH HOH . F 5 HOH A 94 394 13 HOH HOH . F 5 HOH A 95 395 75 HOH HOH . F 5 HOH A 96 396 61 HOH HOH . F 5 HOH A 97 397 46 HOH HOH . F 5 HOH A 98 398 74 HOH HOH . F 5 HOH A 99 399 96 HOH HOH . F 5 HOH A 100 400 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 17.633 7.139 -4.258 1 52.2 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 18.611 8.031 -3.782 1 53.37 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 17.564 7.159 -5.804 1 53.33 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 18.781 7.008 -6.407 1 54.13 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 16.585 6.028 -6.168 1 51.89 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 16.994 5.559 -7.412 1 53.49 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #