data_8Y21 # _model_server_result.job_id WfCSBzIVLcZJFxjYHc-Haw _model_server_result.datetime_utc '2025-08-14 10:46:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 8Y21 # _exptl.entry_id 8Y21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y21 _cell.length_a 68.169 _cell.length_b 78.303 _cell.length_c 109.091 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 K N N ? 4 L N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 323 n n C1 C2 PEG sing 324 n n C1 H11 PEG sing 325 n n C1 H12 PEG sing 326 n n O1 HO1 PEG sing 327 n n C2 O2 PEG sing 328 n n C2 H21 PEG sing 329 n n C2 H22 PEG sing 330 n n O2 C3 PEG sing 331 n n C3 C4 PEG sing 332 n n C3 H31 PEG sing 333 n n C3 H32 PEG sing 334 n n C4 O4 PEG sing 335 n n C4 H41 PEG sing 336 n n C4 H42 PEG sing 337 n n O4 HO4 PEG sing 338 n n # _atom_sites.entry_id 8Y21 _atom_sites.fract_transf_matrix[1][1] 0.014669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PLM C 1 201 2 PLM PLM . F 4 PEG C 1 202 2 PEG PEG . G 4 PEG C 1 203 4 PEG PEG . H 3 PLM D 1 201 201 PLM PLM . I 5 COA D 1 202 2 COA COA . J 4 PEG D 1 203 1 PEG PEG . K 4 PEG D 1 204 5 PEG PEG . L 4 PEG E 1 201 3 PEG PEG . M 6 HOH C 1 301 110 HOH HOH . M 6 HOH C 2 302 288 HOH HOH . M 6 HOH C 3 303 105 HOH HOH . M 6 HOH C 4 304 157 HOH HOH . M 6 HOH C 5 305 23 HOH HOH . M 6 HOH C 6 306 267 HOH HOH . M 6 HOH C 7 307 192 HOH HOH . M 6 HOH C 8 308 71 HOH HOH . M 6 HOH C 9 309 80 HOH HOH . M 6 HOH C 10 310 129 HOH HOH . M 6 HOH C 11 311 100 HOH HOH . M 6 HOH C 12 312 15 HOH HOH . M 6 HOH C 13 313 53 HOH HOH . M 6 HOH C 14 314 171 HOH HOH . M 6 HOH C 15 315 293 HOH HOH . M 6 HOH C 16 316 39 HOH HOH . M 6 HOH C 17 317 18 HOH HOH . M 6 HOH C 18 318 150 HOH HOH . M 6 HOH C 19 319 1 HOH HOH . M 6 HOH C 20 320 26 HOH HOH . M 6 HOH C 21 321 16 HOH HOH . M 6 HOH C 22 322 237 HOH HOH . M 6 HOH C 23 323 17 HOH HOH . M 6 HOH C 24 324 178 HOH HOH . M 6 HOH C 25 325 21 HOH HOH . M 6 HOH C 26 326 47 HOH HOH . M 6 HOH C 27 327 137 HOH HOH . M 6 HOH C 28 328 297 HOH HOH . M 6 HOH C 29 329 222 HOH HOH . M 6 HOH C 30 330 209 HOH HOH . M 6 HOH C 31 331 64 HOH HOH . M 6 HOH C 32 332 41 HOH HOH . M 6 HOH C 33 333 256 HOH HOH . M 6 HOH C 34 334 135 HOH HOH . M 6 HOH C 35 335 76 HOH HOH . M 6 HOH C 36 336 24 HOH HOH . M 6 HOH C 37 337 167 HOH HOH . M 6 HOH C 38 338 195 HOH HOH . M 6 HOH C 39 339 13 HOH HOH . M 6 HOH C 40 340 153 HOH HOH . M 6 HOH C 41 341 217 HOH HOH . M 6 HOH C 42 342 274 HOH HOH . M 6 HOH C 43 343 220 HOH HOH . M 6 HOH C 44 344 245 HOH HOH . M 6 HOH C 45 345 138 HOH HOH . N 6 HOH D 1 301 276 HOH HOH . N 6 HOH D 2 302 101 HOH HOH . N 6 HOH D 3 303 68 HOH HOH . N 6 HOH D 4 304 58 HOH HOH . N 6 HOH D 5 305 25 HOH HOH . N 6 HOH D 6 306 180 HOH HOH . N 6 HOH D 7 307 2 HOH HOH . N 6 HOH D 8 308 48 HOH HOH . N 6 HOH D 9 309 191 HOH HOH . N 6 HOH D 10 310 126 HOH HOH . N 6 HOH D 11 311 46 HOH HOH . N 6 HOH D 12 312 142 HOH HOH . N 6 HOH D 13 313 179 HOH HOH . N 6 HOH D 14 314 45 HOH HOH . N 6 HOH D 15 315 29 HOH HOH . N 6 HOH D 16 316 246 HOH HOH . N 6 HOH D 17 317 106 HOH HOH . N 6 HOH D 18 318 22 HOH HOH . N 6 HOH D 19 319 59 HOH HOH . N 6 HOH D 20 320 164 HOH HOH . N 6 HOH D 21 321 168 HOH HOH . N 6 HOH D 22 322 12 HOH HOH . N 6 HOH D 23 323 292 HOH HOH . N 6 HOH D 24 324 10 HOH HOH . N 6 HOH D 25 325 35 HOH HOH . N 6 HOH D 26 326 166 HOH HOH . N 6 HOH D 27 327 264 HOH HOH . N 6 HOH D 28 328 104 HOH HOH . N 6 HOH D 29 329 238 HOH HOH . N 6 HOH D 30 330 200 HOH HOH . N 6 HOH D 31 331 9 HOH HOH . N 6 HOH D 32 332 30 HOH HOH . N 6 HOH D 33 333 229 HOH HOH . N 6 HOH D 34 334 103 HOH HOH . N 6 HOH D 35 335 283 HOH HOH . N 6 HOH D 36 336 115 HOH HOH . N 6 HOH D 37 337 206 HOH HOH . N 6 HOH D 38 338 90 HOH HOH . N 6 HOH D 39 339 299 HOH HOH . N 6 HOH D 40 340 233 HOH HOH . N 6 HOH D 41 341 187 HOH HOH . N 6 HOH D 42 342 230 HOH HOH . N 6 HOH D 43 343 186 HOH HOH . N 6 HOH D 44 344 324 HOH HOH . N 6 HOH D 45 345 122 HOH HOH . N 6 HOH D 46 346 313 HOH HOH . O 6 HOH E 1 301 183 HOH HOH . O 6 HOH E 2 302 254 HOH HOH . O 6 HOH E 3 303 19 HOH HOH . O 6 HOH E 4 304 145 HOH HOH . O 6 HOH E 5 305 36 HOH HOH . O 6 HOH E 6 306 185 HOH HOH . O 6 HOH E 7 307 89 HOH HOH . O 6 HOH E 8 308 232 HOH HOH . O 6 HOH E 9 309 133 HOH HOH . O 6 HOH E 10 310 32 HOH HOH . O 6 HOH E 11 311 11 HOH HOH . O 6 HOH E 12 312 147 HOH HOH . O 6 HOH E 13 313 42 HOH HOH . O 6 HOH E 14 314 184 HOH HOH . O 6 HOH E 15 315 92 HOH HOH . O 6 HOH E 16 316 33 HOH HOH . O 6 HOH E 17 317 109 HOH HOH . O 6 HOH E 18 318 102 HOH HOH . O 6 HOH E 19 319 51 HOH HOH . O 6 HOH E 20 320 70 HOH HOH . O 6 HOH E 21 321 7 HOH HOH . O 6 HOH E 22 322 239 HOH HOH . O 6 HOH E 23 323 81 HOH HOH . O 6 HOH E 24 324 27 HOH HOH . O 6 HOH E 25 325 95 HOH HOH . O 6 HOH E 26 326 6 HOH HOH . O 6 HOH E 27 327 240 HOH HOH . O 6 HOH E 28 328 50 HOH HOH . O 6 HOH E 29 329 97 HOH HOH . O 6 HOH E 30 330 140 HOH HOH . O 6 HOH E 31 331 269 HOH HOH . O 6 HOH E 32 332 255 HOH HOH . O 6 HOH E 33 333 78 HOH HOH . O 6 HOH E 34 334 252 HOH HOH . O 6 HOH E 35 335 282 HOH HOH . O 6 HOH E 36 336 82 HOH HOH . O 6 HOH E 37 337 34 HOH HOH . O 6 HOH E 38 338 91 HOH HOH . O 6 HOH E 39 339 176 HOH HOH . O 6 HOH E 40 340 303 HOH HOH . O 6 HOH E 41 341 56 HOH HOH . O 6 HOH E 42 342 259 HOH HOH . O 6 HOH E 43 343 4 HOH HOH . O 6 HOH E 44 344 40 HOH HOH . O 6 HOH E 45 345 307 HOH HOH . O 6 HOH E 46 346 108 HOH HOH . O 6 HOH E 47 347 75 HOH HOH . O 6 HOH E 48 348 301 HOH HOH . O 6 HOH E 49 349 154 HOH HOH . O 6 HOH E 50 350 204 HOH HOH . O 6 HOH E 51 351 93 HOH HOH . O 6 HOH E 52 352 87 HOH HOH . O 6 HOH E 53 353 251 HOH HOH . O 6 HOH E 54 354 305 HOH HOH . O 6 HOH E 55 355 212 HOH HOH . O 6 HOH E 56 356 170 HOH HOH . O 6 HOH E 57 357 284 HOH HOH . P 6 HOH F 1 201 139 HOH HOH . P 6 HOH F 2 202 67 HOH HOH . P 6 HOH F 3 203 275 HOH HOH . P 6 HOH F 4 204 132 HOH HOH . P 6 HOH F 5 205 99 HOH HOH . P 6 HOH F 6 206 131 HOH HOH . P 6 HOH F 7 207 28 HOH HOH . P 6 HOH F 8 208 113 HOH HOH . P 6 HOH F 9 209 20 HOH HOH . P 6 HOH F 10 210 96 HOH HOH . P 6 HOH F 11 211 84 HOH HOH . P 6 HOH F 12 212 63 HOH HOH . P 6 HOH F 13 213 65 HOH HOH . P 6 HOH F 14 214 14 HOH HOH . P 6 HOH F 15 215 52 HOH HOH . P 6 HOH F 16 216 149 HOH HOH . P 6 HOH F 17 217 49 HOH HOH . P 6 HOH F 18 218 77 HOH HOH . P 6 HOH F 19 219 117 HOH HOH . P 6 HOH F 20 220 177 HOH HOH . P 6 HOH F 21 221 163 HOH HOH . P 6 HOH F 22 222 158 HOH HOH . P 6 HOH F 23 223 57 HOH HOH . P 6 HOH F 24 224 173 HOH HOH . P 6 HOH F 25 225 8 HOH HOH . P 6 HOH F 26 226 86 HOH HOH . P 6 HOH F 27 227 79 HOH HOH . P 6 HOH F 28 228 5 HOH HOH . P 6 HOH F 29 229 207 HOH HOH . P 6 HOH F 30 230 146 HOH HOH . P 6 HOH F 31 231 253 HOH HOH . P 6 HOH F 32 232 74 HOH HOH . P 6 HOH F 33 233 160 HOH HOH . P 6 HOH F 34 234 130 HOH HOH . P 6 HOH F 35 235 94 HOH HOH . P 6 HOH F 36 236 169 HOH HOH . P 6 HOH F 37 237 55 HOH HOH . P 6 HOH F 38 238 83 HOH HOH . P 6 HOH F 39 239 112 HOH HOH . P 6 HOH F 40 240 321 HOH HOH . P 6 HOH F 41 241 322 HOH HOH . P 6 HOH F 42 242 320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . G 4 -7.07 -0.036 18.65 1 35.31 ? C1 PEG 203 C 1 HETATM 2 C C2 PEG . . . G 4 -8.123 -0.011 17.576 1 38.78 ? C2 PEG 203 C 1 HETATM 3 O O2 PEG . . . G 4 -7.557 -0.189 16.28 1 41.53 ? O2 PEG 203 C 1 HETATM 4 C C3 PEG . . . G 4 -8.542 -0.279 15.241 1 37.39 ? C3 PEG 203 C 1 HETATM 5 C C4 PEG . . . G 4 -8.398 0.875 14.292 1 32.69 ? C4 PEG 203 C 1 HETATM 6 O O4 PEG . . . G 4 -9.42 1.849 14.451 1 34.47 ? O4 PEG 203 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #