data_8Y22
#
_model_server_result.job_id            oQnP3h7iZQAQjnbPygStEA 
_model_server_result.datetime_utc      '2025-01-10 13:42:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8y22 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    8Y22 
#
_exptl.entry_id    8Y22 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              472.562 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[4-[[4-azanyl-3-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrazolo[3,4-d]pyrimidin-1-yl]methyl]phenyl]propanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.47 
_cell.angle_gamma         90 
_cell.entry_id            8Y22 
_cell.length_a            210.105 
_cell.length_b            56.922 
_cell.length_c            65.066 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Y22 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 31 B CYS 488 1_555 C CBH A1LW9 . B A1LW9 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
covale ? covale2 B SG CYS 31 A CYS 488 1_555 H CBH A1LW9 . A A1LW9 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? 
#
_chem_comp.formula           'C25 H24 N6 O2 S' 
_chem_comp.formula_weight    472.562 
_chem_comp.id                A1LW9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[4-[[4-azanyl-3-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrazolo[3,4-d]pyrimidin-1-yl]methyl]phenyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAT CAR A1LW9 sing 1 n n 
CAR CAQ A1LW9 doub 2 n y 
CAR CAS A1LW9 sing 3 n y 
CAQ CAP A1LW9 sing 4 n y 
CAS CAN A1LW9 doub 5 n y 
CAV OAU A1LW9 sing 6 n n 
CAP OAU A1LW9 sing 7 n n 
CAP CAM A1LW9 doub 8 n y 
CAN CAM A1LW9 sing 9 n y 
CAN CAO A1LW9 sing 10 n y 
CAM SAL A1LW9 sing 11 n y 
CAO CAK A1LW9 doub 12 n y 
SAL CAK A1LW9 sing 13 n y 
NAJ C6 A1LW9 sing 14 n n 
CAK CAI A1LW9 sing 15 n n 
C6 C5 A1LW9 doub 16 n y 
C6 N1 A1LW9 sing 17 n y 
CAI C5 A1LW9 sing 18 n y 
CAI NAH A1LW9 doub 19 n y 
C5 C4 A1LW9 sing 20 n y 
N1 C2 A1LW9 doub 21 n y 
NAH NAG A1LW9 sing 22 n y 
C4 NAG A1LW9 sing 23 n y 
C4 N3 A1LW9 doub 24 n y 
NAG CAW A1LW9 sing 25 n n 
C2 N3 A1LW9 sing 26 n y 
CBH CBF A1LW9 sing 27 n n 
CAW CAX A1LW9 sing 28 n n 
CAY CAX A1LW9 doub 29 n y 
CAY CAZ A1LW9 sing 30 n y 
CAX CBC A1LW9 sing 31 n y 
CAZ CBA A1LW9 doub 32 n y 
OBG CBE A1LW9 doub 33 n n 
CBC CBB A1LW9 doub 34 n y 
CBA CBB A1LW9 sing 35 n y 
CBA NBD A1LW9 sing 36 n n 
CBE NBD A1LW9 sing 37 n n 
CBE CBF A1LW9 sing 38 n n 
CBH H1 A1LW9 sing 39 n n 
CBH H2 A1LW9 sing 40 n n 
CBH H3 A1LW9 sing 41 n n 
CBF H4 A1LW9 sing 42 n n 
CBF H5 A1LW9 sing 43 n n 
NBD H6 A1LW9 sing 44 n n 
CBB H7 A1LW9 sing 45 n n 
CBC H8 A1LW9 sing 46 n n 
CAZ H9 A1LW9 sing 47 n n 
CAY H10 A1LW9 sing 48 n n 
CAW H11 A1LW9 sing 49 n n 
CAW H12 A1LW9 sing 50 n n 
C2 H13 A1LW9 sing 51 n n 
NAJ H14 A1LW9 sing 52 n n 
NAJ H15 A1LW9 sing 53 n n 
CAO H16 A1LW9 sing 54 n n 
CAS H17 A1LW9 sing 55 n n 
CAT H18 A1LW9 sing 56 n n 
CAT H19 A1LW9 sing 57 n n 
CAT H20 A1LW9 sing 58 n n 
CAQ H21 A1LW9 sing 59 n n 
CAV H22 A1LW9 sing 60 n n 
CAV H23 A1LW9 sing 61 n n 
CAV H24 A1LW9 sing 62 n n 
#
_atom_sites.entry_id                     8Y22 
_atom_sites.fract_transf_matrix[1][1]    0.00476 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001498 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016113 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1LW9 B 1 801 800 A1LW9 DRG . 
D 3 SO4 B 1 802 900 SO4 SO4 . 
E 3 SO4 B 1 803 901 SO4 SO4 . 
F 3 SO4 B 1 804 3 SO4 SO4 . 
G 3 SO4 B 1 805 4 SO4 SO4 . 
H 2 A1LW9 A 1 801 800 A1LW9 DRG . 
I 3 SO4 A 1 802 900 SO4 SO4 . 
J 3 SO4 A 1 803 1 SO4 SO4 . 
K 3 SO4 A 1 804 5 SO4 SO4 . 
L 4 HOH B 1 901 31 HOH HOH . 
L 4 HOH B 2 902 16 HOH HOH . 
L 4 HOH B 3 903 23 HOH HOH . 
L 4 HOH B 4 904 6 HOH HOH . 
L 4 HOH B 5 905 32 HOH HOH . 
L 4 HOH B 6 906 30 HOH HOH . 
L 4 HOH B 7 907 19 HOH HOH . 
L 4 HOH B 8 908 7 HOH HOH . 
L 4 HOH B 9 909 34 HOH HOH . 
L 4 HOH B 10 910 39 HOH HOH . 
L 4 HOH B 11 911 10 HOH HOH . 
L 4 HOH B 12 912 18 HOH HOH . 
L 4 HOH B 13 913 20 HOH HOH . 
L 4 HOH B 14 914 36 HOH HOH . 
L 4 HOH B 15 915 4 HOH HOH . 
L 4 HOH B 16 916 37 HOH HOH . 
L 4 HOH B 17 917 8 HOH HOH . 
L 4 HOH B 18 918 9 HOH HOH . 
L 4 HOH B 19 919 15 HOH HOH . 
L 4 HOH B 20 920 35 HOH HOH . 
L 4 HOH B 21 921 33 HOH HOH . 
M 4 HOH A 1 901 26 HOH HOH . 
M 4 HOH A 2 902 1 HOH HOH . 
M 4 HOH A 3 903 29 HOH HOH . 
M 4 HOH A 4 904 3 HOH HOH . 
M 4 HOH A 5 905 25 HOH HOH . 
M 4 HOH A 6 906 2 HOH HOH . 
M 4 HOH A 7 907 12 HOH HOH . 
M 4 HOH A 8 908 27 HOH HOH . 
M 4 HOH A 9 909 14 HOH HOH . 
M 4 HOH A 10 910 5 HOH HOH . 
M 4 HOH A 11 911 38 HOH HOH . 
M 4 HOH A 12 912 22 HOH HOH . 
M 4 HOH A 13 913 13 HOH HOH . 
M 4 HOH A 14 914 11 HOH HOH . 
M 4 HOH A 15 915 17 HOH HOH . 
M 4 HOH A 16 916 21 HOH HOH . 
M 4 HOH A 17 917 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 A1LW9 . . . C 2 178.456 6.135 145.372 1 50.91 ? C4 A1LW9 801 B 1 
HETATM 2 C C5 A1LW9 . . . C 2 177.815 5.525 144.383 1 52.71 ? C5 A1LW9 801 B 1 
HETATM 3 C C6 A1LW9 . . . C 2 177.197 4.353 144.606 1 44.18 ? C6 A1LW9 801 B 1 
HETATM 4 N N1 A1LW9 . . . C 2 177.205 3.767 145.813 1 39.93 ? N1 A1LW9 801 B 1 
HETATM 5 N N3 A1LW9 . . . C 2 178.502 5.606 146.605 1 45.67 ? N3 A1LW9 801 B 1 
HETATM 6 C CBH A1LW9 . . . C 2 184.406 13.61 140.961 1 95.89 ? CBH A1LW9 801 B 1 
HETATM 7 C CBF A1LW9 . . . C 2 184.138 13.639 142.461 1 92.83 ? CBF A1LW9 801 B 1 
HETATM 8 C CBE A1LW9 . . . C 2 182.93 12.756 142.796 1 87.4 ? CBE A1LW9 801 B 1 
HETATM 9 O OBG A1LW9 . . . C 2 181.844 12.939 142.243 1 97.88 ? OBG A1LW9 801 B 1 
HETATM 10 N NBD A1LW9 . . . C 2 183.224 11.789 143.69 1 79.69 ? NBD A1LW9 801 B 1 
HETATM 11 C CBA A1LW9 . . . C 2 182.33 10.911 144.178 1 71.02 ? CBA A1LW9 801 B 1 
HETATM 12 C CBB A1LW9 . . . C 2 180.965 11.176 144.266 1 68.87 ? CBB A1LW9 801 B 1 
HETATM 13 C CBC A1LW9 . . . C 2 180.095 10.234 144.804 1 65.97 ? CBC A1LW9 801 B 1 
HETATM 14 C CAZ A1LW9 . . . C 2 182.8 9.698 144.68 1 69.24 ? CAZ A1LW9 801 B 1 
HETATM 15 C CAY A1LW9 . . . C 2 181.938 8.752 145.226 1 67.48 ? CAY A1LW9 801 B 1 
HETATM 16 C CAX A1LW9 . . . C 2 180.577 9.019 145.279 1 65.98 ? CAX A1LW9 801 B 1 
HETATM 17 C CAW A1LW9 . . . C 2 179.72 8.088 145.85 1 60.92 ? CAW A1LW9 801 B 1 
HETATM 18 N NAG A1LW9 . . . C 2 178.978 7.262 144.891 1 54.71 ? NAG A1LW9 801 B 1 
HETATM 19 N NAH A1LW9 . . . C 2 178.711 7.399 143.72 1 54.29 ? NAH A1LW9 801 B 1 
HETATM 20 C C2 A1LW9 . . . C 2 177.871 4.39 146.865 1 41.85 ? C2 A1LW9 801 B 1 
HETATM 21 N NAJ A1LW9 . . . C 2 176.568 3.774 143.587 1 39.84 ? NAJ A1LW9 801 B 1 
HETATM 22 C CAI A1LW9 . . . C 2 177.997 6.341 143.338 1 55.34 ? CAI A1LW9 801 B 1 
HETATM 23 C CAK A1LW9 . . . C 2 177.525 6.155 142.106 1 46.43 ? CAK A1LW9 801 B 1 
HETATM 24 C CAO A1LW9 . . . C 2 177.906 5.205 141.25 1 31.37 ? CAO A1LW9 801 B 1 
HETATM 25 S SAL A1LW9 . . . C 2 176.38 7.042 141.432 1 62.82 ? SAL A1LW9 801 B 1 
HETATM 26 C CAM A1LW9 . . . C 2 176.334 6.234 140.014 1 45.49 ? CAM A1LW9 801 B 1 
HETATM 27 C CAN A1LW9 . . . C 2 177.245 5.242 140.077 1 37.89 ? CAN A1LW9 801 B 1 
HETATM 28 C CAS A1LW9 . . . C 2 177.395 4.441 139.025 1 44.7 ? CAS A1LW9 801 B 1 
HETATM 29 C CAR A1LW9 . . . C 2 176.638 4.594 137.871 1 38.65 ? CAR A1LW9 801 B 1 
HETATM 30 C CAT A1LW9 . . . C 2 176.814 3.738 136.795 1 33.31 ? CAT A1LW9 801 B 1 
HETATM 31 C CAQ A1LW9 . . . C 2 175.704 5.613 137.811 1 40.33 ? CAQ A1LW9 801 B 1 
HETATM 32 C CAP A1LW9 . . . C 2 175.582 6.427 138.93 1 43.71 ? CAP A1LW9 801 B 1 
HETATM 33 O OAU A1LW9 . . . C 2 174.698 7.465 138.992 1 46.3 ? OAU A1LW9 801 B 1 
HETATM 34 C CAV A1LW9 . . . C 2 173.754 7.429 137.909 1 36.84 ? CAV A1LW9 801 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#