data_8Y2G # _model_server_result.job_id r6XBhcq8FB27T384S6doGg _model_server_result.datetime_utc '2025-06-27 17:02:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8Y2G # _exptl.entry_id 8Y2G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 233.306 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Dexmethylphenidate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y2G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 180 1_555 A SG CYS 131 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 123 A ASN 181 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 130 A ASN 188 1_555 C C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? metalc ? metalc1 A O GLY 17 A GLY 75 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc2 A O VAL 20 A VAL 78 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A O SER 263 A SER 321 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc4 A O LEU 360 A LEU 418 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc5 A OD2 ASP 363 A ASP 421 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 A OG SER 364 A SER 422 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'C14 H19 N O2' _chem_comp.formula_weight 233.306 _chem_comp.id A1D5U _chem_comp.mon_nstd_flag . _chem_comp.name Dexmethylphenidate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dexmethylphenidate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 A1D5U sing 1 n n C10 N11 A1D5U sing 2 n n C09 C08 A1D5U sing 3 n n O04 C03 A1D5U doub 4 n n N11 C06 A1D5U sing 5 n n C08 C07 A1D5U sing 6 n n C06 C07 A1D5U sing 7 n n C06 C05 A1D5U sing 8 n n C03 C05 A1D5U sing 9 n n C03 O02 A1D5U sing 10 n n C01 O02 A1D5U sing 11 n n C13 C14 A1D5U doub 12 n y C13 C12 A1D5U sing 13 n y C14 C15 A1D5U sing 14 n y C05 C12 A1D5U sing 15 n n C12 C17 A1D5U doub 16 n y C15 C16 A1D5U doub 17 n y C17 C16 A1D5U sing 18 n y C10 H1 A1D5U sing 19 n n C10 H2 A1D5U sing 20 n n C13 H3 A1D5U sing 21 n n C15 H4 A1D5U sing 22 n n C17 H5 A1D5U sing 23 n n C01 H6 A1D5U sing 24 n n C01 H7 A1D5U sing 25 n n C01 H8 A1D5U sing 26 n n C05 H9 A1D5U sing 27 n n C06 H10 A1D5U sing 28 n n C07 H11 A1D5U sing 29 n n C07 H12 A1D5U sing 30 n n C08 H13 A1D5U sing 31 n n C08 H14 A1D5U sing 32 n n C09 H15 A1D5U sing 33 n n C09 H16 A1D5U sing 34 n n C14 H17 A1D5U sing 35 n n C16 H18 A1D5U sing 36 n n N11 H19 A1D5U sing 37 n n # _atom_sites.entry_id 8Y2G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1D5U A 1 701 701 A1D5U LIG . C 3 NAG A 1 702 702 NAG NAG . D 3 NAG A 1 703 703 NAG NAG . E 4 CL A 1 704 704 CL CL . F 5 NA A 1 705 705 NA NA . G 5 NA A 1 706 706 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1D5U . . . B 2 138.026 138.127 135.194 1 54.13 ? C10 A1D5U 701 A 1 HETATM 2 C C13 A1D5U . . . B 2 136.931 133.138 136.727 1 53.61 ? C13 A1D5U 701 A 1 HETATM 3 C C15 A1D5U . . . B 2 136.018 131.348 138.112 1 54.09 ? C15 A1D5U 701 A 1 HETATM 4 C C17 A1D5U . . . B 2 137.331 133.148 139.099 1 49.6 ? C17 A1D5U 701 A 1 HETATM 5 C C01 A1D5U . . . B 2 141.999 133.894 137.454 1 58.96 ? C01 A1D5U 701 A 1 HETATM 6 C C03 A1D5U . . . B 2 139.795 134.761 137.204 1 56.81 ? C03 A1D5U 701 A 1 HETATM 7 C C05 A1D5U . . . B 2 138.34 135.085 137.709 1 52.18 ? C05 A1D5U 701 A 1 HETATM 8 C C06 A1D5U . . . B 2 137.655 136.098 136.68 1 52.86 ? C06 A1D5U 701 A 1 HETATM 9 C C07 A1D5U . . . B 2 136.411 136.817 137.26 1 50.86 ? C07 A1D5U 701 A 1 HETATM 10 C C08 A1D5U . . . B 2 135.767 137.817 136.27 1 51.52 ? C08 A1D5U 701 A 1 HETATM 11 C C09 A1D5U . . . B 2 136.796 138.837 135.768 1 53.74 ? C09 A1D5U 701 A 1 HETATM 12 C C12 A1D5U . . . B 2 137.519 133.771 137.843 1 53.38 ? C12 A1D5U 701 A 1 HETATM 13 C C14 A1D5U . . . B 2 136.191 131.945 136.857 1 55.24 ? C14 A1D5U 701 A 1 HETATM 14 C C16 A1D5U . . . B 2 136.594 131.956 139.236 1 50.81 ? C16 A1D5U 701 A 1 HETATM 15 N N11 A1D5U . . . B 2 138.641 137.206 136.254 1 56.34 ? N11 A1D5U 701 A 1 HETATM 16 O O02 A1D5U . . . B 2 140.734 134.223 138.057 1 63.8 ? O02 A1D5U 701 A 1 HETATM 17 O O04 A1D5U . . . B 2 140.125 134.974 136.066 1 60.17 ? O04 A1D5U 701 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #