data_8Y2G
#
_model_server_result.job_id            wnvpu13saTPS6CK7ilx2wA 
_model_server_result.datetime_utc      '2025-06-28 00:51:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8y2g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    8Y2G 
#
_exptl.entry_id    8Y2G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Y2G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Y2G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 122 A CYS 180 1_555 A SG CYS 131 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 123 A ASN 181 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 130 A ASN 188 1_555 C C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
metalc ? metalc1 A O GLY 17 A GLY 75 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc2 A O VAL 20 A VAL 78 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc3 A O SER 263 A SER 321 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc4 A O LEU 360 A LEU 418 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc5 A OD2 ASP 363 A ASP 421 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc6 A OG SER 364 A SER 422 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 272 n n 
C1 O1 NAG sing 273 n n 
C1 O5 NAG sing 274 n n 
C1 H1 NAG sing 275 n n 
C2 C3 NAG sing 276 n n 
C2 N2 NAG sing 277 n n 
C2 H2 NAG sing 278 n n 
C3 C4 NAG sing 279 n n 
C3 O3 NAG sing 280 n n 
C3 H3 NAG sing 281 n n 
C4 C5 NAG sing 282 n n 
C4 O4 NAG sing 283 n n 
C4 H4 NAG sing 284 n n 
C5 C6 NAG sing 285 n n 
C5 O5 NAG sing 286 n n 
C5 H5 NAG sing 287 n n 
C6 O6 NAG sing 288 n n 
C6 H61 NAG sing 289 n n 
C6 H62 NAG sing 290 n n 
C7 C8 NAG sing 291 n n 
C7 N2 NAG sing 292 n n 
C7 O7 NAG doub 293 n n 
C8 H81 NAG sing 294 n n 
C8 H82 NAG sing 295 n n 
C8 H83 NAG sing 296 n n 
N2 HN2 NAG sing 297 n n 
O1 HO1 NAG sing 298 n n 
O3 HO3 NAG sing 299 n n 
O4 HO4 NAG sing 300 n n 
O6 HO6 NAG sing 301 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8Y2G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1D5U A 1 701 701 A1D5U LIG . 
C 3 NAG A 1 702 702 NAG NAG . 
D 3 NAG A 1 703 703 NAG NAG . 
E 4 CL A 1 704 704 CL CL . 
F 5 NA A 1 705 705 NA NA . 
G 5 NA A 1 706 706 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 168.347 132.559 157.374 1 113.66 ? C1 NAG 702 A 1 
HETATM 2 C C2 NAG . . . C 3 169.519 132.333 156.416 1 114.25 ? C2 NAG 702 A 1 
HETATM 3 C C3 NAG . . . C 3 169.194 131.214 155.43 1 115.08 ? C3 NAG 702 A 1 
HETATM 4 C C4 NAG . . . C 3 168.775 129.955 156.174 1 115.7 ? C4 NAG 702 A 1 
HETATM 5 C C5 NAG . . . C 3 167.619 130.268 157.119 1 116.07 ? C5 NAG 702 A 1 
HETATM 6 C C6 NAG . . . C 3 167.223 129.091 157.978 1 112.92 ? C6 NAG 702 A 1 
HETATM 7 C C7 NAG . . . C 3 170.666 134.495 156.207 1 115.26 ? C7 NAG 702 A 1 
HETATM 8 C C8 NAG . . . C 3 170.903 135.692 155.336 1 114.36 ? C8 NAG 702 A 1 
HETATM 9 N N2 NAG . . . C 3 169.855 133.557 155.706 1 114.65 ? N2 NAG 702 A 1 
HETATM 10 O O3 NAG . . . C 3 170.338 130.945 154.627 1 111.64 ? O3 NAG 702 A 1 
HETATM 11 O O4 NAG . . . C 3 168.369 128.951 155.249 1 113.4 ? O4 NAG 702 A 1 
HETATM 12 O O5 NAG . . . C 3 168.001 131.321 158.016 1 116.13 ? O5 NAG 702 A 1 
HETATM 13 O O6 NAG . . . C 3 168.129 128.91 159.057 1 112.73 ? O6 NAG 702 A 1 
HETATM 14 O O7 NAG . . . C 3 171.183 134.383 157.314 1 113.82 ? O7 NAG 702 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#