data_8Y2L
#
_model_server_result.job_id            xZXyOp6Oeb4OdLEynShGJA 
_model_server_result.datetime_utc      '2025-02-23 23:44:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8y2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8Y2L 
#
_exptl.entry_id    8Y2L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Y2L 
_cell.length_a            155.166 
_cell.length_b            268.755 
_cell.length_c            194.862 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Y2L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 291 A ASP 288 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? 
metalc ? metalc2 A OE1 GLU 518 A GLU 515 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.743 ? 
metalc ? metalc3 A OG SER 521 A SER 518 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? 
metalc ? metalc4 D MN MN . A MN 601 1_555 E O1A UDP . A UDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? 
metalc ? metalc5 D MN MN . A MN 601 1_555 E O3B UDP . A UDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? 
metalc ? metalc6 B OD2 ASP 291 B ASP 288 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? 
metalc ? metalc7 B OE1 GLU 518 B GLU 515 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
metalc ? metalc8 B OG SER 521 B SER 518 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
metalc ? metalc9 F MN MN . B MN 601 1_555 G O1A UDP . B UDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? 
metalc ? metalc10 F MN MN . B MN 601 1_555 G O3B UDP . B UDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? 
metalc ? metalc11 C OD2 ASP 291 C ASP 288 1_555 H MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? 
metalc ? metalc12 C OE1 GLU 518 C GLU 515 1_555 H MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? 
metalc ? metalc13 C OG SER 521 C SER 518 1_555 H MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? 
metalc ? metalc14 H MN MN . C MN 601 1_555 I O1A UDP . C UDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? 
metalc ? metalc15 H MN MN . C MN 601 1_555 I O3B UDP . C UDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8Y2L 
_atom_sites.fract_transf_matrix[1][1]    0.006445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003721 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MN A 1 601 1 MN MN . 
E 3 UDP A 1 602 1 UDP UDP . 
F 2 MN B 1 601 2 MN MN . 
G 3 UDP B 1 602 2 UDP UDP . 
H 2 MN C 1 601 3 MN MN . 
I 3 UDP C 1 602 3 UDP UDP . 
J 4 HOH A 1 701 1 HOH HOH . 
J 4 HOH A 2 702 4 HOH HOH . 
J 4 HOH A 3 703 6 HOH HOH . 
J 4 HOH A 4 704 12 HOH HOH . 
J 4 HOH A 5 705 5 HOH HOH . 
K 4 HOH B 1 701 2 HOH HOH . 
K 4 HOH B 2 702 8 HOH HOH . 
K 4 HOH B 3 703 9 HOH HOH . 
K 4 HOH B 4 704 13 HOH HOH . 
L 4 HOH C 1 701 3 HOH HOH . 
L 4 HOH C 2 702 10 HOH HOH . 
L 4 HOH C 3 703 11 HOH HOH . 
L 4 HOH C 4 704 14 HOH HOH . 
L 4 HOH C 5 705 7 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               54.508 
_atom_site.Cartn_y               54.559 
_atom_site.Cartn_z               -18.925 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        186.26 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#