data_8Y2M # _model_server_result.job_id xfaU6tIChyy1dYIlHCuqJg _model_server_result.datetime_utc '2024-12-26 16:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 8Y2M # _exptl.entry_id 8Y2M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 396.69 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'hexacosanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y2M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 53 B CYS 53 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 102 B CYS 102 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 D SG CYS 53 D CYS 53 1_555 D SG CYS 75 D CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 102 D CYS 102 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C26 H52 O2' _chem_comp.formula_weight 396.69 _chem_comp.id 7PO _chem_comp.mon_nstd_flag . _chem_comp.name 'hexacosanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 7PO sing 137 n n C03 C02 7PO sing 138 n n C03 C04 7PO sing 139 n n C05 C04 7PO sing 140 n n C05 C06 7PO sing 141 n n C07 C06 7PO sing 142 n n C07 C08 7PO sing 143 n n C09 C08 7PO sing 144 n n C09 C10 7PO sing 145 n n C11 C10 7PO sing 146 n n C11 C12 7PO sing 147 n n C13 C12 7PO sing 148 n n C13 C14 7PO sing 149 n n C14 C15 7PO sing 150 n n C15 C16 7PO sing 151 n n C16 C17 7PO sing 152 n n C17 C18 7PO sing 153 n n C18 C19 7PO sing 154 n n C19 C20 7PO sing 155 n n C20 C21 7PO sing 156 n n C21 C22 7PO sing 157 n n C22 C23 7PO sing 158 n n C23 C24 7PO sing 159 n n C24 C25 7PO sing 160 n n O28 C26 7PO doub 161 n n C25 C26 7PO sing 162 n n C26 O27 7PO sing 163 n n C10 H1 7PO sing 164 n n C10 H2 7PO sing 165 n n C13 H3 7PO sing 166 n n C13 H4 7PO sing 167 n n C15 H5 7PO sing 168 n n C15 H6 7PO sing 169 n n C17 H7 7PO sing 170 n n C17 H8 7PO sing 171 n n C20 H9 7PO sing 172 n n C20 H10 7PO sing 173 n n C21 H11 7PO sing 174 n n C21 H12 7PO sing 175 n n C22 H13 7PO sing 176 n n C22 H14 7PO sing 177 n n C24 H15 7PO sing 178 n n C24 H16 7PO sing 179 n n C01 H17 7PO sing 180 n n C01 H18 7PO sing 181 n n C01 H19 7PO sing 182 n n C02 H20 7PO sing 183 n n C02 H21 7PO sing 184 n n C03 H22 7PO sing 185 n n C03 H23 7PO sing 186 n n C04 H24 7PO sing 187 n n C04 H25 7PO sing 188 n n C05 H26 7PO sing 189 n n C05 H27 7PO sing 190 n n C06 H28 7PO sing 191 n n C06 H29 7PO sing 192 n n C07 H30 7PO sing 193 n n C07 H31 7PO sing 194 n n C08 H32 7PO sing 195 n n C08 H33 7PO sing 196 n n C09 H34 7PO sing 197 n n C09 H35 7PO sing 198 n n C11 H36 7PO sing 199 n n C11 H37 7PO sing 200 n n C12 H38 7PO sing 201 n n C12 H39 7PO sing 202 n n C14 H40 7PO sing 203 n n C14 H41 7PO sing 204 n n C16 H42 7PO sing 205 n n C16 H43 7PO sing 206 n n C18 H44 7PO sing 207 n n C18 H45 7PO sing 208 n n C19 H46 7PO sing 209 n n C19 H47 7PO sing 210 n n C23 H48 7PO sing 211 n n C23 H49 7PO sing 212 n n C25 H50 7PO sing 213 n n C25 H51 7PO sing 214 n n O27 H52 7PO sing 215 n n # _atom_sites.entry_id 8Y2M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6PL A 1 501 3 6PL 6PL . F 4 A1D5V A 1 502 1 A1D5V DRG . G 5 7PO A 1 503 1 7PO 7PO . H 3 6PL B 1 201 1 6PL 6PL . I 3 6PL B 1 202 2 6PL 6PL . J 3 6PL C 1 501 6 6PL 6PL . K 4 A1D5V C 1 502 2 A1D5V DRG . L 5 7PO C 1 503 2 7PO 7PO . M 3 6PL D 1 201 4 6PL 6PL . N 3 6PL D 1 202 5 6PL 6PL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7PO . . . G 5 129.709 114.067 129.589 1 30 ? C10 7PO 503 A 1 HETATM 2 C C13 7PO . . . G 5 128.174 111.574 131.947 1 30 ? C13 7PO 503 A 1 HETATM 3 C C15 7PO . . . G 5 125.996 111.022 133.354 1 30 ? C15 7PO 503 A 1 HETATM 4 C C17 7PO . . . G 5 123.443 111.563 134.286 1 30 ? C17 7PO 503 A 1 HETATM 5 C C20 7PO . . . G 5 122.575 111.141 137.233 1 30 ? C20 7PO 503 A 1 HETATM 6 C C21 7PO . . . G 5 122.932 110.513 138.566 1 30 ? C21 7PO 503 A 1 HETATM 7 C C22 7PO . . . G 5 121.725 110.212 139.382 1 30 ? C22 7PO 503 A 1 HETATM 8 C C24 7PO . . . G 5 121.129 109.467 141.69 1 30 ? C24 7PO 503 A 1 HETATM 9 C C26 7PO . . . G 5 118.616 109.399 142.548 1 30 ? C26 7PO 503 A 1 HETATM 10 C C01 7PO . . . G 5 137.091 119.019 123.468 1 30 ? C01 7PO 503 A 1 HETATM 11 C C02 7PO . . . G 5 135.641 118.959 123.409 1 30 ? C02 7PO 503 A 1 HETATM 12 C C03 7PO . . . G 5 135.1 119.24 124.758 1 30 ? C03 7PO 503 A 1 HETATM 13 C C04 7PO . . . G 5 133.821 118.597 125.311 1 30 ? C04 7PO 503 A 1 HETATM 14 C C05 7PO . . . G 5 133.86 117.95 126.683 1 30 ? C05 7PO 503 A 1 HETATM 15 C C06 7PO . . . G 5 132.77 116.919 126.988 1 30 ? C06 7PO 503 A 1 HETATM 16 C C07 7PO . . . G 5 132.373 116.717 128.455 1 30 ? C07 7PO 503 A 1 HETATM 17 C C08 7PO . . . G 5 131.519 115.503 128.535 1 30 ? C08 7PO 503 A 1 HETATM 18 C C09 7PO . . . G 5 130.62 115.276 129.724 1 30 ? C09 7PO 503 A 1 HETATM 19 C C11 7PO . . . G 5 129.36 113.354 130.831 1 30 ? C11 7PO 503 A 1 HETATM 20 C C12 7PO . . . G 5 128.375 112.253 130.625 1 30 ? C12 7PO 503 A 1 HETATM 21 C C14 7PO . . . G 5 126.894 110.805 132.097 1 30 ? C14 7PO 503 A 1 HETATM 22 C C16 7PO . . . G 5 124.489 111.42 133.199 1 30 ? C16 7PO 503 A 1 HETATM 23 C C18 7PO . . . G 5 124.403 111.584 135.378 1 30 ? C18 7PO 503 A 1 HETATM 24 C C19 7PO . . . G 5 123.988 110.99 136.702 1 30 ? C19 7PO 503 A 1 HETATM 25 C C23 7PO . . . G 5 121.973 109.163 140.445 1 30 ? C23 7PO 503 A 1 HETATM 26 C C25 7PO . . . G 5 119.628 109.614 141.4 1 30 ? C25 7PO 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #