data_8Y2N
#
_model_server_result.job_id            bTwuaDJnhITPK7zn6CwCng 
_model_server_result.datetime_utc      '2024-12-26 11:41:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8y2n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":201}' 
#
_entry.id    8Y2N 
#
_exptl.entry_id    8Y2N 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              763.1 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Y2N 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Y2N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 53 B CYS 53 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 102 B CYS 102 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 D SG CYS 53 D CYS 53 1_555 D SG CYS 75 D CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 D SG CYS 102 D CYS 102 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C42 H85 N O8 P 1' 
_chem_comp.formula_weight    763.1 
_chem_comp.id                6PL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C25 6PL sing 1 n n 
C26 H261 6PL sing 2 n n 
C26 H262 6PL sing 3 n n 
C26 H263 6PL sing 4 n n 
C25 C24 6PL sing 5 n n 
C25 H251 6PL sing 6 n n 
C25 H252 6PL sing 7 n n 
C24 C23 6PL sing 8 n n 
C24 H241 6PL sing 9 n n 
C24 H242 6PL sing 10 n n 
C23 C22 6PL sing 11 n n 
C23 H231 6PL sing 12 n n 
C23 H232 6PL sing 13 n n 
C22 C21 6PL sing 14 n n 
C22 H221 6PL sing 15 n n 
C22 H222 6PL sing 16 n n 
C21 C20 6PL sing 17 n n 
C21 H211 6PL sing 18 n n 
C21 H212 6PL sing 19 n n 
C20 C19 6PL sing 20 n n 
C20 H201 6PL sing 21 n n 
C20 H202 6PL sing 22 n n 
C19 C18 6PL sing 23 n n 
C19 H191 6PL sing 24 n n 
C19 H192 6PL sing 25 n n 
C18 C17 6PL sing 26 n n 
C18 H181 6PL sing 27 n n 
C18 H182 6PL sing 28 n n 
C17 C16 6PL sing 29 n n 
C17 H171 6PL sing 30 n n 
C17 H172 6PL sing 31 n n 
C16 C15 6PL sing 32 n n 
C16 H161 6PL sing 33 n n 
C16 H162 6PL sing 34 n n 
C15 C14 6PL sing 35 n n 
C15 H151 6PL sing 36 n n 
C15 H152 6PL sing 37 n n 
C14 C13 6PL sing 38 n n 
C14 H141 6PL sing 39 n n 
C14 H142 6PL sing 40 n n 
C13 C12 6PL sing 41 n n 
C13 H131 6PL sing 42 n n 
C13 H132 6PL sing 43 n n 
C12 C11 6PL sing 44 n n 
C12 H121 6PL sing 45 n n 
C12 H122 6PL sing 46 n n 
C11 O11 6PL doub 47 n n 
C11 O3 6PL sing 48 n n 
O3 C3 6PL sing 49 n n 
C3 C2 6PL sing 50 n n 
C3 H31 6PL sing 51 n n 
C3 H32 6PL sing 52 n n 
C2 C1 6PL sing 53 n n 
C2 O2 6PL sing 54 n n 
C2 H2 6PL sing 55 n n 
C1 O3P 6PL sing 56 n n 
C1 H11 6PL sing 57 n n 
C1 H12 6PL sing 58 n n 
O3P P 6PL sing 59 n n 
P O1P 6PL doub 60 n n 
P O2P 6PL sing 61 n n 
P O4P 6PL sing 62 n n 
O2P H2P 6PL sing 63 n n 
O4P C4 6PL sing 64 n n 
C4 C5 6PL sing 65 n n 
C4 H41 6PL sing 66 n n 
C4 H42 6PL sing 67 n n 
C5 N 6PL sing 68 n n 
C5 H51 6PL sing 69 n n 
C5 H52 6PL sing 70 n n 
N C7 6PL sing 71 n n 
N C8 6PL sing 72 n n 
N C6 6PL sing 73 n n 
C7 H71 6PL sing 74 n n 
C7 H72 6PL sing 75 n n 
C7 H73 6PL sing 76 n n 
C8 H81 6PL sing 77 n n 
C8 H82 6PL sing 78 n n 
C8 H83 6PL sing 79 n n 
C6 H61 6PL sing 80 n n 
C6 H62 6PL sing 81 n n 
C6 H63 6PL sing 82 n n 
O2 C31 6PL sing 83 n n 
C31 O31 6PL doub 84 n n 
C31 C32 6PL sing 85 n n 
C32 C33 6PL sing 86 n n 
C32 H321 6PL sing 87 n n 
C32 H322 6PL sing 88 n n 
C33 C34 6PL sing 89 n n 
C33 H331 6PL sing 90 n n 
C33 H332 6PL sing 91 n n 
C34 C35 6PL sing 92 n n 
C34 H341 6PL sing 93 n n 
C34 H342 6PL sing 94 n n 
C35 C36 6PL sing 95 n n 
C35 H351 6PL sing 96 n n 
C35 H352 6PL sing 97 n n 
C36 C37 6PL sing 98 n n 
C36 H361 6PL sing 99 n n 
C36 H362 6PL sing 100 n n 
C37 C38 6PL sing 101 n n 
C37 H371 6PL sing 102 n n 
C37 H372 6PL sing 103 n n 
C38 C39 6PL sing 104 n n 
C38 H381 6PL sing 105 n n 
C38 H382 6PL sing 106 n n 
C39 C40 6PL sing 107 n n 
C39 H391 6PL sing 108 n n 
C39 H392 6PL sing 109 n n 
C40 C41 6PL sing 110 n n 
C40 H401 6PL sing 111 n n 
C40 H402 6PL sing 112 n n 
C41 C42 6PL sing 113 n n 
C41 H411 6PL sing 114 n n 
C41 H412 6PL sing 115 n n 
C42 C43 6PL sing 116 n n 
C42 H421 6PL sing 117 n n 
C42 H422 6PL sing 118 n n 
C43 C44 6PL sing 119 n n 
C43 H431 6PL sing 120 n n 
C43 H432 6PL sing 121 n n 
C44 C45 6PL sing 122 n n 
C44 H441 6PL sing 123 n n 
C44 H442 6PL sing 124 n n 
C45 C46 6PL sing 125 n n 
C45 H451 6PL sing 126 n n 
C45 H452 6PL sing 127 n n 
C46 C47 6PL sing 128 n n 
C46 H461 6PL sing 129 n n 
C46 H462 6PL sing 130 n n 
C47 C48 6PL sing 131 n n 
C47 H471 6PL sing 132 n n 
C47 H472 6PL sing 133 n n 
C48 H481 6PL sing 134 n n 
C48 H482 6PL sing 135 n n 
C48 H483 6PL sing 136 n n 
#
_atom_sites.entry_id                     8Y2N 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 6PL A 1 501 3 6PL 6PL . 
F 3 6PL A 1 502 4 6PL 6PL . 
G 3 6PL B 1 201 1 6PL 6PL . 
H 3 6PL B 1 202 2 6PL 6PL . 
I 3 6PL C 1 501 7 6PL 6PL . 
J 3 6PL C 1 502 8 6PL 6PL . 
K 3 6PL D 1 201 5 6PL 6PL . 
L 3 6PL D 1 202 6 6PL 6PL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C26 6PL . . . K 3 121.572 139.502 150.532 1 79.18 ? C26 6PL 201 D 1 
HETATM 2 C C25 6PL . . . K 3 122.359 138.192 150.529 1 79.18 ? C25 6PL 201 D 1 
HETATM 3 C C24 6PL . . . K 3 123.672 138.394 149.765 1 79.18 ? C24 6PL 201 D 1 
HETATM 4 C C23 6PL . . . K 3 124.341 137.029 149.519 1 79.18 ? C23 6PL 201 D 1 
HETATM 5 C C22 6PL . . . K 3 125.575 137.209 148.616 1 79.18 ? C22 6PL 201 D 1 
HETATM 6 C C21 6PL . . . K 3 126.65 138.015 149.367 1 79.18 ? C21 6PL 201 D 1 
HETATM 7 C C20 6PL . . . K 3 128.03 137.373 149.144 1 79.18 ? C20 6PL 201 D 1 
HETATM 8 C C19 6PL . . . K 3 129.04 137.997 150.122 1 79.18 ? C19 6PL 201 D 1 
HETATM 9 C C18 6PL . . . K 3 130.33 137.164 150.146 1 79.18 ? C18 6PL 201 D 1 
HETATM 10 C C17 6PL . . . K 3 131.082 137.432 151.463 1 79.18 ? C17 6PL 201 D 1 
HETATM 11 C C16 6PL . . . K 3 130.099 137.295 152.635 1 79.18 ? C16 6PL 201 D 1 
HETATM 12 C C15 6PL . . . K 3 130.473 138.313 153.741 1 79.18 ? C15 6PL 201 D 1 
HETATM 13 C C14 6PL . . . K 3 131.359 137.613 154.787 1 79.18 ? C14 6PL 201 D 1 
HETATM 14 C C13 6PL . . . K 3 130.667 137.732 156.158 1 79.18 ? C13 6PL 201 D 1 
HETATM 15 C C12 6PL . . . K 3 130.547 139.24 156.492 1 79.18 ? C12 6PL 201 D 1 
HETATM 16 C C11 6PL . . . K 3 131.369 139.502 157.782 1 79.18 ? C11 6PL 201 D 1 
HETATM 17 O O11 6PL . . . K 3 131.814 138.564 158.358 1 79.18 ? O11 6PL 201 D 1 
HETATM 18 O O3 6PL . . . K 3 131.579 140.854 158.245 1 79.18 ? O3 6PL 201 D 1 
HETATM 19 C C3 6PL . . . K 3 131.938 140.988 159.609 1 79.18 ? C3 6PL 201 D 1 
HETATM 20 C C2 6PL . . . K 3 133.426 140.636 159.762 1 79.18 ? C2 6PL 201 D 1 
HETATM 21 C C1 6PL . . . K 3 134.002 141.274 161.022 1 79.18 ? C1 6PL 201 D 1 
HETATM 22 O O3P 6PL . . . K 3 134.896 140.322 161.557 1 79.18 ? O3P 6PL 201 D 1 
HETATM 23 P P 6PL . . . K 3 136.15 140.871 162.5 1 79.18 ? P 6PL 201 D 1 
HETATM 24 O O1P 6PL . . . K 3 136.913 141.928 161.743 1 79.18 ? O1P 6PL 201 D 1 
HETATM 25 O O2P 6PL . . . K 3 135.565 141.477 163.75 1 79.18 ? O2P 6PL 201 D 1 
HETATM 26 O O4P 6PL . . . K 3 137.126 139.583 162.862 1 79.18 ? O4P 6PL 201 D 1 
HETATM 27 O O2 6PL . . . K 3 134.117 141.092 158.652 1 79.18 ? O2 6PL 201 D 1 
HETATM 28 C C31 6PL . . . K 3 135.261 140.306 158.353 1 79.18 ? C31 6PL 201 D 1 
HETATM 29 O O31 6PL . . . K 3 136.328 140.681 158.675 1 79.18 ? O31 6PL 201 D 1 
HETATM 30 C C32 6PL . . . K 3 135.119 138.961 157.606 1 79.18 ? C32 6PL 201 D 1 
HETATM 31 C C33 6PL . . . K 3 136.317 138.807 156.634 1 79.18 ? C33 6PL 201 D 1 
HETATM 32 C C34 6PL . . . K 3 136.279 139.936 155.56 1 79.18 ? C34 6PL 201 D 1 
HETATM 33 C C35 6PL . . . K 3 134.858 140.01 154.945 1 79.18 ? C35 6PL 201 D 1 
HETATM 34 C C36 6PL . . . K 3 134.935 140.428 153.454 1 79.18 ? C36 6PL 201 D 1 
HETATM 35 C C37 6PL . . . K 3 134.491 139.231 152.567 1 79.18 ? C37 6PL 201 D 1 
HETATM 36 C C38 6PL . . . K 3 135.707 138.281 152.344 1 79.18 ? C38 6PL 201 D 1 
HETATM 37 C C39 6PL . . . K 3 135.219 136.835 152.077 1 79.18 ? C39 6PL 201 D 1 
HETATM 38 C C40 6PL . . . K 3 134.976 136.609 150.56 1 79.18 ? C40 6PL 201 D 1 
HETATM 39 C C41 6PL . . . K 3 134.864 135.081 150.285 1 79.18 ? C41 6PL 201 D 1 
HETATM 40 C C42 6PL . . . K 3 134.129 134.833 148.937 1 79.18 ? C42 6PL 201 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           402 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           40 
#