data_8Y4W # _model_server_result.job_id keO9lQPPFty-E9nJEbOOGg _model_server_result.datetime_utc '2025-03-19 00:42:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 8Y4W # _exptl.entry_id 8Y4W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y4W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 50 B CYS 50 1_555 B SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O SER 342 A SER 295 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A O SER 345 A SER 298 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc3 A OE1 GLU 359 A GLU 312 1_555 E NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc4 A O THR 377 A THR 330 1_555 E NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc5 A O GLY 384 A GLY 337 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 A O VAL 387 A VAL 340 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 A O PRO 389 A PRO 342 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 A O GLY 564 A GLY 517 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 A O MET 565 A MET 518 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc10 A O GLY 605 A GLY 558 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc11 A O THR 608 A THR 561 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc12 A OG1 THR 608 A THR 561 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc13 A O MET 611 A MET 564 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 275 n n C1 C6 PTY sing 276 n n C1 HC11 PTY sing 277 n n C1 HC12 PTY sing 278 n n C2 C3 PTY sing 279 n n C2 N1 PTY sing 280 n n C2 HC21 PTY sing 281 n n C2 HC22 PTY sing 282 n n C3 O11 PTY sing 283 n n C3 HC31 PTY sing 284 n n C3 HC32 PTY sing 285 n n O4 C30 PTY sing 286 n n C5 C6 PTY sing 287 n n C5 O14 PTY sing 288 n n C5 HC51 PTY sing 289 n n C5 HC52 PTY sing 290 n n C6 O7 PTY sing 291 n n C6 HC6 PTY sing 292 n n O7 C8 PTY sing 293 n n C8 O10 PTY doub 294 n n C8 C11 PTY sing 295 n n C11 C12 PTY sing 296 n n C11 H111 PTY sing 297 n n C11 H112 PTY sing 298 n n C12 C13 PTY sing 299 n n C12 H121 PTY sing 300 n n C12 H122 PTY sing 301 n n C13 C14 PTY sing 302 n n C13 H131 PTY sing 303 n n C13 H132 PTY sing 304 n n C14 C15 PTY sing 305 n n C14 H141 PTY sing 306 n n C14 H142 PTY sing 307 n n C15 C16 PTY sing 308 n n C15 H151 PTY sing 309 n n C15 H152 PTY sing 310 n n C16 C17 PTY sing 311 n n C16 H161 PTY sing 312 n n C16 H162 PTY sing 313 n n C17 C18 PTY sing 314 n n C17 H171 PTY sing 315 n n C17 H172 PTY sing 316 n n C18 C19 PTY sing 317 n n C18 H181 PTY sing 318 n n C18 H182 PTY sing 319 n n C19 C20 PTY sing 320 n n C19 H191 PTY sing 321 n n C19 H192 PTY sing 322 n n C20 C21 PTY sing 323 n n C20 H201 PTY sing 324 n n C20 H202 PTY sing 325 n n C21 C22 PTY sing 326 n n C21 H211 PTY sing 327 n n C21 H212 PTY sing 328 n n C22 C23 PTY sing 329 n n C22 H221 PTY sing 330 n n C22 H222 PTY sing 331 n n C23 C24 PTY sing 332 n n C23 H231 PTY sing 333 n n C23 H232 PTY sing 334 n n C24 C25 PTY sing 335 n n C24 H241 PTY sing 336 n n C24 H242 PTY sing 337 n n C25 C26 PTY sing 338 n n C25 H251 PTY sing 339 n n C25 H252 PTY sing 340 n n C26 C27 PTY sing 341 n n C26 H261 PTY sing 342 n n C26 H262 PTY sing 343 n n C27 C28 PTY sing 344 n n C27 H271 PTY sing 345 n n C27 H272 PTY sing 346 n n C28 C29 PTY sing 347 n n C28 H281 PTY sing 348 n n C28 H282 PTY sing 349 n n C29 H291 PTY sing 350 n n C29 H292 PTY sing 351 n n C29 H293 PTY sing 352 n n C30 C31 PTY sing 353 n n C30 O30 PTY doub 354 n n C31 C32 PTY sing 355 n n C31 H311 PTY sing 356 n n C31 H312 PTY sing 357 n n C32 C33 PTY sing 358 n n C32 H321 PTY sing 359 n n C32 H322 PTY sing 360 n n C33 C34 PTY sing 361 n n C33 H331 PTY sing 362 n n C33 H332 PTY sing 363 n n C34 C35 PTY sing 364 n n C34 H341 PTY sing 365 n n C34 H342 PTY sing 366 n n C35 C36 PTY sing 367 n n C35 H351 PTY sing 368 n n C35 H352 PTY sing 369 n n C36 C37 PTY sing 370 n n C36 H361 PTY sing 371 n n C36 H362 PTY sing 372 n n C37 C38 PTY sing 373 n n C37 H371 PTY sing 374 n n C37 H372 PTY sing 375 n n C38 C39 PTY sing 376 n n C38 H381 PTY sing 377 n n C38 H382 PTY sing 378 n n C39 C40 PTY sing 379 n n C39 H391 PTY sing 380 n n C39 H392 PTY sing 381 n n C40 C41 PTY sing 382 n n C40 H401 PTY sing 383 n n C40 H402 PTY sing 384 n n C41 C42 PTY sing 385 n n C41 H411 PTY sing 386 n n C41 H412 PTY sing 387 n n C42 C43 PTY sing 388 n n C42 H421 PTY sing 389 n n C42 H422 PTY sing 390 n n C43 C44 PTY sing 391 n n C43 H431 PTY sing 392 n n C43 H432 PTY sing 393 n n C44 H441 PTY sing 394 n n C44 H442 PTY sing 395 n n C44 H443 PTY sing 396 n n P1 O11 PTY sing 397 n n P1 O12 PTY sing 398 n n P1 O13 PTY doub 399 n n P1 O14 PTY sing 400 n n O12 H12O PTY sing 401 n n N1 HN11 PTY sing 402 n n N1 HN12 PTY sing 403 n n # _atom_sites.entry_id 8Y4W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 701 1 NA NA . D 3 NA A 1 702 2 NA NA . E 3 NA A 1 703 3 NA NA . F 4 PTY A 1 704 1 PTY PTY . G 4 PTY A 1 705 2 PTY PTY . H 5 SLB A 1 706 1 SLB SLB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . F 4 220.529 229.549 193.231 1 39.34 ? C1 PTY 704 A 1 HETATM 2 C C2 PTY . . . F 4 215.242 234.125 193.016 1 52.82 ? C2 PTY 704 A 1 HETATM 3 C C3 PTY . . . F 4 216.737 233.892 193.023 1 55.54 ? C3 PTY 704 A 1 HETATM 4 O O4 PTY . . . F 4 221.485 228.605 193.707 1 41.45 ? O4 PTY 704 A 1 HETATM 5 C C5 PTY . . . F 4 219.372 231.642 193.923 1 40.97 ? C5 PTY 704 A 1 HETATM 6 C C6 PTY . . . F 4 220.22 230.475 194.379 1 40.23 ? C6 PTY 704 A 1 HETATM 7 O O7 PTY . . . F 4 221.481 230.896 194.909 1 42.53 ? O7 PTY 704 A 1 HETATM 8 C C8 PTY . . . F 4 221.579 231.159 196.208 1 37.76 ? C8 PTY 704 A 1 HETATM 9 O O10 PTY . . . F 4 220.642 231.481 196.885 1 36.92 ? O10 PTY 704 A 1 HETATM 10 C C11 PTY . . . F 4 222.983 230.999 196.718 1 34.71 ? C11 PTY 704 A 1 HETATM 11 C C12 PTY . . . F 4 223.092 231.246 198.211 1 31.74 ? C12 PTY 704 A 1 HETATM 12 C C13 PTY . . . F 4 224.492 230.998 198.754 1 25.8 ? C13 PTY 704 A 1 HETATM 13 C C14 PTY . . . F 4 224.833 229.519 198.829 1 20.79 ? C14 PTY 704 A 1 HETATM 14 C C15 PTY . . . F 4 225.648 229.149 200.057 1 21.54 ? C15 PTY 704 A 1 HETATM 15 C C16 PTY . . . F 4 226.282 227.772 199.943 1 22.22 ? C16 PTY 704 A 1 HETATM 16 C C17 PTY . . . F 4 227.239 227.632 198.769 1 29.04 ? C17 PTY 704 A 1 HETATM 17 C C18 PTY . . . F 4 228.559 228.355 198.996 1 35.42 ? C18 PTY 704 A 1 HETATM 18 C C19 PTY . . . F 4 229.613 228.07 197.936 1 40.14 ? C19 PTY 704 A 1 HETATM 19 C C20 PTY . . . F 4 229.952 226.59 197.818 1 43.64 ? C20 PTY 704 A 1 HETATM 20 C C21 PTY . . . F 4 231.429 226.317 197.573 1 46.41 ? C21 PTY 704 A 1 HETATM 21 C C22 PTY . . . F 4 231.901 226.788 196.205 1 44.49 ? C22 PTY 704 A 1 HETATM 22 C C23 PTY . . . F 4 233.399 227.047 196.129 1 45.81 ? C23 PTY 704 A 1 HETATM 23 C C24 PTY . . . F 4 234.244 225.804 195.873 1 48.43 ? C24 PTY 704 A 1 HETATM 24 C C25 PTY . . . F 4 235.736 226.076 196.01 1 46.48 ? C25 PTY 704 A 1 HETATM 25 C C26 PTY . . . F 4 236.631 224.938 195.536 1 51.24 ? C26 PTY 704 A 1 HETATM 26 C C27 PTY . . . F 4 238.111 225.225 195.756 1 50.32 ? C27 PTY 704 A 1 HETATM 27 C C28 PTY . . . F 4 239.03 224.527 194.761 1 46.36 ? C28 PTY 704 A 1 HETATM 28 C C29 PTY . . . F 4 240.432 225.118 194.742 1 38.09 ? C29 PTY 704 A 1 HETATM 29 C C30 PTY . . . F 4 221.026 227.446 194.162 1 34.81 ? C30 PTY 704 A 1 HETATM 30 C C31 PTY . . . F 4 221.822 226.958 195.336 1 28.14 ? C31 PTY 704 A 1 HETATM 31 O O30 PTY . . . F 4 220.089 226.875 193.672 1 34.79 ? O30 PTY 704 A 1 HETATM 32 C C32 PTY . . . F 4 222.706 225.779 194.991 1 29.82 ? C32 PTY 704 A 1 HETATM 33 C C33 PTY . . . F 4 223.963 225.755 195.843 1 32.13 ? C33 PTY 704 A 1 HETATM 34 C C34 PTY . . . F 4 223.651 225.581 197.319 1 27.58 ? C34 PTY 704 A 1 HETATM 35 C C35 PTY . . . F 4 224.699 224.755 198.047 1 30.86 ? C35 PTY 704 A 1 HETATM 36 C C36 PTY . . . F 4 224.822 223.342 197.497 1 37.42 ? C36 PTY 704 A 1 HETATM 37 C C37 PTY . . . F 4 225.77 222.46 198.297 1 43.83 ? C37 PTY 704 A 1 HETATM 38 C C38 PTY . . . F 4 227.239 222.775 198.049 1 46.28 ? C38 PTY 704 A 1 HETATM 39 C C39 PTY . . . F 4 227.802 222.129 196.79 1 47.78 ? C39 PTY 704 A 1 HETATM 40 C C40 PTY . . . F 4 228.755 220.978 197.088 1 51.85 ? C40 PTY 704 A 1 HETATM 41 C C41 PTY . . . F 4 229.312 220.305 195.84 1 55.16 ? C41 PTY 704 A 1 HETATM 42 C C42 PTY . . . F 4 230.328 221.155 195.089 1 56.34 ? C42 PTY 704 A 1 HETATM 43 C C43 PTY . . . F 4 231.583 221.469 195.894 1 52.88 ? C43 PTY 704 A 1 HETATM 44 C C44 PTY . . . F 4 232.646 222.189 195.075 1 46.31 ? C44 PTY 704 A 1 HETATM 45 P P1 PTY . . . F 4 217.236 231.383 192.433 1 81.95 ? P1 PTY 704 A 1 HETATM 46 O O11 PTY . . . F 4 216.991 232.584 193.517 1 61.11 ? O11 PTY 704 A 1 HETATM 47 O O12 PTY . . . F 4 216.889 231.846 191.054 1 68.54 ? O12 PTY 704 A 1 HETATM 48 O O13 PTY . . . F 4 216.653 230.1 192.938 1 63.38 ? O13 PTY 704 A 1 HETATM 49 O O14 PTY . . . F 4 218.869 231.372 192.637 1 49.97 ? O14 PTY 704 A 1 HETATM 50 N N1 PTY . . . F 4 214.678 234.058 194.355 1 51.53 ? N1 PTY 704 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 422 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 50 #